EWM21066.1, cds9608 (CDS) Nannochloropsis gaditana

Overview
NameEWM21066.1
Unique Namecds9608
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:34256..34261 +
Alignment locationKK037255.1:34478..34593 +
Alignment locationKK037255.1:34704..34822 +
Alignment locationKK037255.1:35028..35123 +
Alignment locationKK037255.1:35442..35533 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21066.1
Productfad-linked oxidoreductase
Orig transcript idgnl|cribi|Naga_101180g1.9042.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:34256..34261 +
KK037255.1supercontigKK037255.1:34478..34593 +
KK037255.1supercontigKK037255.1:34704..34822 +
KK037255.1supercontigKK037255.1:35028..35123 +
KK037255.1supercontigKK037255.1:35442..35533 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0016491oxidoreductase activity
GO:0050660flavin adenine dinucleotide binding
GO:0008762UDP-N-acetylmuramate dehydrogenase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR016166FAD-bd_2
IPR006094Oxid_FAD_bind_N
IPR016167FAD-bd_2_sub1
Homology
BLAST of EWM21066.1 vs. NCBI_GenBank
Match: gi|585101095|gb|EWM21066.1| (fad-linked oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 296.975 bits (759), Expect = 5.848e-102
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query:    1 MHDPPILGGDPASSFLINFGHNEQATGVRKHHPKTYEEVASLVRTVRSQGGKLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHGR 142
            MHDPPILGGDPASSFLINFGHNEQATGVRKHHPKTYEEVASLVRTVRSQGGKLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHGR
Sbjct:    1 MHDPPILGGDPASSFLINFGHNEQATGVRKHHPKTYEEVASLVRTVRSQGGKLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHGR 142          
BLAST of EWM21066.1 vs. NCBI_GenBank
Match: gi|585103699|gb|EWM22966.1| (fad linked oxidase domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 192.586 bits (488), Expect = 1.706e-55
Identity = 89/136 (65.44%), Postives = 107/136 (78.68%), Query Frame = 0
Query:    6 ILGGDPASSFLINFGHNEQATGVRKHHPKTYEEVASLVRTVRSQGGKLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHG 141
            + G +P    L N+  N++ TG+RKHHPKTY+EVA+LVR  R++G KLR MG  HSWSN+ P+D+TDV+FLD FK I+Q P DY+ VTVQAGVLQSELADWADS  RG GRFSYL Q T+V  +TFVGACQTASHG
Sbjct:   82 VFGDNPDVDTLTNWAQNQKVTGLRKHHPKTYDEVAALVRQKRAEGAKLRVMGVAHSWSNVLPDDNTDVVFLDNFKLITQSPNDYSIVTVQAGVLQSELADWADSPARGYGRFSYLYQNTLVQPITFVGACQTASHG 217          
BLAST of EWM21066.1 vs. NCBI_GenBank
Match: gi|585108367|gb|EWM26357.1| (fad-linked oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 166.392 bits (420), Expect = 6.728e-46
Identity = 81/151 (53.64%), Postives = 102/151 (67.55%), Query Frame = 0
Query:    1 MHDPPILGGDPASSF----------LINFGHNEQATGVRKHHPKTYEEVASLVRTVRSQGGKLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHG 141
            M D P +  D A S           + N+G N     +  HHPKTY+EVA LV+ +++QG K+R +G +HSWSN+F +D T V+FLD FK I+QDP DYTRVT+QAGV  +ELAD+ADS  RG GRFSYL   T+V  VTF+GA QTASHG
Sbjct:   53 MADHPFVSMDEAKSMFGPSEGPGANISNWGQNYCGNNIHVHHPKTYQEVAGLVKALKAQGAKVRVLGVMHSWSNVFADDGTHVIFLDSFKSITQDPNDYTRVTLQAGVTNAELADFADSPNRGYGRFSYLKMNTLVQAVTFIGAAQTASHG 203          
BLAST of EWM21066.1 vs. NCBI_GenBank
Match: gi|553179540|ref|XP_005852716.1| (fad-linked oxidoreductase [Nannochloropsis gaditana CCMP526] >gi|422295817|gb|EKU23116.1| fad-linked oxidoreductase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 135.576 bits (340), Expect = 7.042e-35
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 0
Query:   56 MGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHG 141
            MG  HSWSN+ P+D+TDV+FLD FK I+Q P DY+ VTVQAGVLQSELADWADS  RG GRFSYL Q T+V  +TFVGACQTASHG
Sbjct:    1 MGVAHSWSNVLPDDNTDVVFLDNFKLITQSPNDYSIVTVQAGVLQSELADWADSPARGYGRFSYLYQNTLVQPITFVGACQTASHG 86          
BLAST of EWM21066.1 vs. NCBI_GenBank
Match: gi|298713381|emb|CBJ33594.1| (FAD linked oxidase domain-containing protein [Ectocarpus siliculosus])

HSP 1 Score: 58.5362 bits (140), Expect = 2.699e-7
Identity = 37/126 (29.37%), Postives = 60/126 (47.62%), Query Frame = 0
Query:   18 NFGHNEQATGVRKHHPKTYEEVASLVRTVRSQGG--KLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHG 141
            N+    Q    +   PK+  +V  ++   R +    K+R +G+ HSW+++F +D + VL       I       T+VT+  GV   +L  + DS ERG  R  +L    V+  VT+ G   +A HG
Sbjct:   74 NWAATVQTAPAKVLKPKSIRDVQEILSEARCRNPMPKIRCVGSGHSWTHLFADDGSWVLDTSGINDIVWSSDCPTQVTIGPGVTPGQLGTYMDSKERGKWRGLFLPSDVVLESVTYGGTISSACHG 199          
The following BLAST results are available for this feature:
BLAST of EWM21066.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585101095|gb|EWM21066.1|5.848e-102100.00fad-linked oxidoreductase [Nannochloropsis gaditan... [more]
gi|585103699|gb|EWM22966.1|1.706e-5565.44fad linked oxidase domain-containing protein [Nann... [more]
gi|585108367|gb|EWM26357.1|6.728e-4653.64fad-linked oxidoreductase [Nannochloropsis gaditan... [more]
gi|553179540|ref|XP_005852716.1|7.042e-3573.26fad-linked oxidoreductase [Nannochloropsis gaditan... [more]
gi|298713381|emb|CBJ33594.1|2.699e-729.37FAD linked oxidase domain-containing protein [Ecto... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9639rna9639Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications