EWM21066.1, cds9608 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21066.1 vs. NCBI_GenBank
Match: gi|585101095|gb|EWM21066.1| (fad-linked oxidoreductase [Nannochloropsis gaditana]) HSP 1 Score: 296.975 bits (759), Expect = 5.848e-102 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MHDPPILGGDPASSFLINFGHNEQATGVRKHHPKTYEEVASLVRTVRSQGGKLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHGR 142
MHDPPILGGDPASSFLINFGHNEQATGVRKHHPKTYEEVASLVRTVRSQGGKLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHGR
Sbjct: 1 MHDPPILGGDPASSFLINFGHNEQATGVRKHHPKTYEEVASLVRTVRSQGGKLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHGR 142
BLAST of EWM21066.1 vs. NCBI_GenBank
Match: gi|585103699|gb|EWM22966.1| (fad linked oxidase domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 192.586 bits (488), Expect = 1.706e-55 Identity = 89/136 (65.44%), Postives = 107/136 (78.68%), Query Frame = 0
Query: 6 ILGGDPASSFLINFGHNEQATGVRKHHPKTYEEVASLVRTVRSQGGKLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHG 141
+ G +P L N+ N++ TG+RKHHPKTY+EVA+LVR R++G KLR MG HSWSN+ P+D+TDV+FLD FK I+Q P DY+ VTVQAGVLQSELADWADS RG GRFSYL Q T+V +TFVGACQTASHG
Sbjct: 82 VFGDNPDVDTLTNWAQNQKVTGLRKHHPKTYDEVAALVRQKRAEGAKLRVMGVAHSWSNVLPDDNTDVVFLDNFKLITQSPNDYSIVTVQAGVLQSELADWADSPARGYGRFSYLYQNTLVQPITFVGACQTASHG 217
BLAST of EWM21066.1 vs. NCBI_GenBank
Match: gi|585108367|gb|EWM26357.1| (fad-linked oxidoreductase [Nannochloropsis gaditana]) HSP 1 Score: 166.392 bits (420), Expect = 6.728e-46 Identity = 81/151 (53.64%), Postives = 102/151 (67.55%), Query Frame = 0
Query: 1 MHDPPILGGDPASSF----------LINFGHNEQATGVRKHHPKTYEEVASLVRTVRSQGGKLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHG 141
M D P + D A S + N+G N + HHPKTY+EVA LV+ +++QG K+R +G +HSWSN+F +D T V+FLD FK I+QDP DYTRVT+QAGV +ELAD+ADS RG GRFSYL T+V VTF+GA QTASHG
Sbjct: 53 MADHPFVSMDEAKSMFGPSEGPGANISNWGQNYCGNNIHVHHPKTYQEVAGLVKALKAQGAKVRVLGVMHSWSNVFADDGTHVIFLDSFKSITQDPNDYTRVTLQAGVTNAELADFADSPNRGYGRFSYLKMNTLVQAVTFIGAAQTASHG 203
BLAST of EWM21066.1 vs. NCBI_GenBank
Match: gi|553179540|ref|XP_005852716.1| (fad-linked oxidoreductase [Nannochloropsis gaditana CCMP526] >gi|422295817|gb|EKU23116.1| fad-linked oxidoreductase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 135.576 bits (340), Expect = 7.042e-35 Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 0
Query: 56 MGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHG 141
MG HSWSN+ P+D+TDV+FLD FK I+Q P DY+ VTVQAGVLQSELADWADS RG GRFSYL Q T+V +TFVGACQTASHG
Sbjct: 1 MGVAHSWSNVLPDDNTDVVFLDNFKLITQSPNDYSIVTVQAGVLQSELADWADSPARGYGRFSYLYQNTLVQPITFVGACQTASHG 86
BLAST of EWM21066.1 vs. NCBI_GenBank
Match: gi|298713381|emb|CBJ33594.1| (FAD linked oxidase domain-containing protein [Ectocarpus siliculosus]) HSP 1 Score: 58.5362 bits (140), Expect = 2.699e-7 Identity = 37/126 (29.37%), Postives = 60/126 (47.62%), Query Frame = 0
Query: 18 NFGHNEQATGVRKHHPKTYEEVASLVRTVRSQGG--KLRPMGALHSWSNIFPEDDTDVLFLDQFKKISQDPTDYTRVTVQAGVLQSELADWADSAERGPGRFSYLSQATVVTGVTFVGACQTASHG 141
N+ Q + PK+ +V ++ R + K+R +G+ HSW+++F +D + VL I T+VT+ GV +L + DS ERG R +L V+ VT+ G +A HG
Sbjct: 74 NWAATVQTAPAKVLKPKSIRDVQEILSEARCRNPMPKIRCVGSGHSWTHLFADDGSWVLDTSGINDIVWSSDCPTQVTIGPGVTPGQLGTYMDSKERGKWRGLFLPSDVVLESVTYGGTISSACHG 199 The following BLAST results are available for this feature:
BLAST of EWM21066.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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