rna9635, rna9635 (mRNA) Nannochloropsis gaditana

Overview
Namerna9635
Unique Namerna9635
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length815
Alignment locationKK037255.1:27887..28852 +

Link to JBrowse

Properties
Property NameValue
ProductReduced growth phenotype protein 1
Orig transcript idgnl|cribi|Naga_101000g1.9627.mrna
Orig protein idgnl|cribi|Naga_101000g1.9627
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:27887..28852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101000g1gene9355Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9635rna9635-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21068.1cds9604Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9635 ID=rna9635|Name=rna9635|organism=Nannochloropsis gaditana|type=mRNA|length=815bp
AGCTGCCTGGCAAAGGTTTGCTTGCCACAGGGACGTGGATGTGCGCGGGA
GGTGGGGGGCGAAGCCATAGCCGTGGGCAGATGGCAATATAAAACAGGCT
TTTAACCTCTCCATCAGGACAGCGTGAGAAGCACGGAGGGAGGTATCGTA
CCCATTCATGAGCAAAACGCGCAATCTGTGGCTACAATCCTTTTCCTGCC
GGTGAAAAAATTGTGGAGTGCACACAGCAAGTGATATTTGTCCTGGGTGG
TGTCTTTCTTCAGGCGAGGTTTAGCAAATGCTGAAAAAGGACGTGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGG
AGGTTAGGACCGTAGCGTCCTCTGCATCTTTCCCAATGTTGACCGCGGAA
AAAATCTCTCCGCGCGACAATGGTGAAGGGAAGCAGCGAAGGGAGTGCGC
CCGACGTGTGGAAAGAAGCAGCGGTCGTGGGGTGTGGGGGGGCATCGGGC
AGGGATGGGAAGTAGACAGGCTGCGCGCACCGGAAGGGATGGAAGACGCA
CAAAGAGCGGAGAAGGATCCTTTAGACAGGAGGATCGCTCGATTGCTTGC
CCTGGGACGGAGGGGAGGCGACGGACAAGGACTGCGGGAGGTACTCAAGC
TCCTCCCTCCCTCCCTGCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCT
TTCCCTTCTTCCCTCCTTCCCTCCCTCTTTCCCTTCTTCCCTCCTTCGCC
TTCTTTCTCCCCTTCTATTTTTCTTTTCCGGACCTTTCTGTTTCATTTTC
CCTCACTTTTTCCCT
back to top

protein sequence of rna9635

>rna9635-protein ID=rna9635-protein|Name=rna9635|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
PSLPPSLYLQVSACLIREEWRYHPQPSHRKLLDRTVLDTFHDLTASSLTC
AVSLKIPIDATPSFVTPFTSLEWKVCFEFVTNQEEDALDEAAAVADEEKA
RLERINARLLASWGKGGEEVGVVWEEEEEGEEEGLGVGTGIESGCPETVT
PARTSKLRWSYPVRVLPPTDSDPTDLFMDSHVERCAIEMFA
back to top

mRNA from alignment at KK037255.1:27887..28852+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9635 ID=rna9635|Name=rna9635|organism=Nannochloropsis gaditana|type=mRNA|length=966bp|location=Sequence derived from alignment at KK037255.1:27887..28852+ (Nannochloropsis gaditana)
ccctccctccctccctccctctacctccaGGTGTCGGCGTGCCTGATCCG
AGAAGAGTGGCGCTACCACCCTCAGCCCTCCCACCGGAAACTCCTGGACC
GGACCGTCCTTGACACTTTCCACGACCTAACTGCCTCAAGCCTCACGTGC
GCCGTATCcctgaaggtggggagggagggagggagggagggagggaggga
gggagggagggagaacttGGGCGTGGTACCCGTGCCTAGCTCTCACTAGG
GTTCAGATGTCCACGGCcaagcctttccttcctccctttcagctcccctc
ttccataATTCAAATTTCTTGATCTATTGACTCAACTCCCTCGCTCGCTC
AATTTcatcctccctgtcttcccctccctctcttcctccctcccctcctt
cttcccagaTTCCAATCGACGCCACCCCCAGCTTTGTCACGCCCTTTACC
TCCCTGGAATGGAAGGTTTGCTTCGAATTTGTCACCAatcaggaggaaga
cgccttgGACGAAGCAGCCGCCGTGGCCGATGAGGAGAAAGCTCGCTTGG
AGAGGATCAATGCCCGGTTGCTAGCTTCttgggggaaagggggggaggag
gtgggcgtggtttgggaggaggaagaagaaggggaggaggaggggctggg
ggtgGGTACGGGAATCGAAAGTGGGTGCCCTGAGACCGTTACTCCGGCTC
GCACTTCGAAATTGCGGTGGAGCTACCCTGTCCGtgtgctccctcccaca
gacAGCGATCCCACCGATTTGTTTATGGACTCGCACGTGGAGCGATGCGC
GATTGAGATGTTTGCGTGACCCGAAAGATATGGCACATAATTGTAAAAGC
CCTCGTTTTTTCCTTCTAAGCTTGAGGGTAAATTGTGTCTCGTGACTGTT
AATTTTAGATTTTCTTACTTTTTacacggagggggaggttaagcgCCAGT
CCGGCTGAATGCAAAC
back to top

Coding sequence (CDS) from alignment at KK037255.1:27887..28852+

>rna9635 ID=rna9635|Name=rna9635|organism=Nannochloropsis gaditana|type=CDS|length=1152bp|location=Sequence derived from alignment at KK037255.1:27887..28852+ (Nannochloropsis gaditana)
ccctccctccctccctccctctacctccaGGTGTCGGCGTGCCTGATCCG
AGAAGAGTGGCGCTACCACCCTCAGCCCTCCCACCGGAAACTCCTGGACC
GGACCGTCCTTGACACTTTCCACGACCTAACTGCCTCAAGCCTCACGTGC
GCCGTATCcctgaagaTTCCAATCGACGCCACCCCCAGCTTTGTCACGCC
CTTTACCTCCCTGGAATGGAAGGTTTGCTTCGAATTTGTCACCAatcagg
aggaagacgccttgGACGAAGCAGCCGCCGTGGCCGATGAGGAGAAAGCT
CGCTTGGAGAGGATCAATGCCCGGTTGCTAGCTTCttgggggaaaggggg
ggaggaggtgggcgtggtttgggaggaggaagaagaaggggaggaggagg
ggctgggggtgGGTACGGGAATCGAAAGTGGGTGCCCTGAGACCGTTACT
CCGGCTCGCACTTCGAAATTGCGGTGGAGCTACCCTGTCCGtgtgctccc
tcccacagacAGCGATCCCACCGATTTGTTTATGGACTCGCACGTGGAGC
GATGCGCGATTGAGATGTTTGCGTGAccctccctccctccctccctctac
ctccaGGTGTCGGCGTGCCTGATCCGAGAAGAGTGGCGCTACCACCCTCA
GCCCTCCCACCGGAAACTCCTGGACCGGACCGTCCTTGACACTTTCCACG
ACCTAACTGCCTCAAGCCTCACGTGCGCCGTATCcctgaagaTTCCAATC
GACGCCACCCCCAGCTTTGTCACGCCCTTTACCTCCCTGGAATGGAAGGT
TTGCTTCGAATTTGTCACCAatcaggaggaagacgccttgGACGAAGCAG
CCGCCGTGGCCGATGAGGAGAAAGCTCGCTTGGAGAGGATCAATGCCCGG
TTGCTAGCTTCttgggggaaagggggggaggaggtgggcgtggtttggga
ggaggaagaagaaggggaggaggaggggctgggggtgGGTACGGGAATCG
AAAGTGGGTGCCCTGAGACCGTTACTCCGGCTCGCACTTCGAAATTGCGG
TGGAGCTACCCTGTCCGtgtgctccctcccacagacAGCGATCCCACCGA
TTTGTTTATGGACTCGCACGTGGAGCGATGCGCGATTGAGATGTTTGCGT
GA
back to top
Synonyms
Publications