EWM21068.1, cds9604 (CDS) Nannochloropsis gaditana

Overview
NameEWM21068.1
Unique Namecds9604
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:27887..28051 +
Alignment locationKK037255.1:28295..28705 +

Link to JBrowse

Properties
Property NameValue
Start range27887
Start range.
Protein idEWM21068.1
ProductReduced growth phenotype protein 1
Partialtrue
Orig transcript idgnl|cribi|Naga_101000g1.9627.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:27887..28051 +
KK037255.1supercontigKK037255.1:28295..28705 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR014848Rgp1
Homology
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BLAST of EWM21068.1 vs. NCBI_GenBank
Match: gi|585101099|gb|EWM21068.1| (Reduced growth phenotype protein 1, partial [Nannochloropsis gaditana])

HSP 1 Score: 389.423 bits (999), Expect = 4.840e-137
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0 
Query:    1 PSLPPSLYLQVSACLIREEWRYHPQPSHRKLLDRTVLDTFHDLTASSLTCAVSLKIPIDATPSFVTPFTSLEWKVCFEFVTNQEEDALDEAAAVADEEKARLERINARLLASWGKGGEEVGVVWEEEEEGEEEGLGVGTGIESGCPETVTPARTSKLRWSYPVRVLPPTDSDPTDLFMDSHVERCAIEMFA 191
            PSLPPSLYLQVSACLIREEWRYHPQPSHRKLLDRTVLDTFHDLTASSLTCAVSLKIPIDATPSFVTPFTSLEWKVCFEFVTNQEEDALDEAAAVADEEKARLERINARLLASWGKGGEEVGVVWEEEEEGEEEGLGVGTGIESGCPETVTPARTSKLRWSYPVRVLPPTDSDPTDLFMDSHVERCAIEMFA
Sbjct:    1 PSLPPSLYLQVSACLIREEWRYHPQPSHRKLLDRTVLDTFHDLTASSLTCAVSLKIPIDATPSFVTPFTSLEWKVCFEFVTNQEEDALDEAAAVADEEKARLERINARLLASWGKGGEEVGVVWEEEEEGEEEGLGVGTGIESGCPETVTPARTSKLRWSYPVRVLPPTDSDPTDLFMDSHVERCAIEMFA 191
The following BLAST results are available for this feature:
BLAST of EWM21068.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585101099|gb|EWM21068.1|4.840e-137100.00Reduced growth phenotype protein 1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9635rna9635Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications