rna9632, rna9632 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9632
Unique Name	rna9632
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	930
Alignment location	KK037255.1:17892..20406 +

Link to JBrowse

Properties


Property Name	Value
Product	Uncharacterized domain UPF0079, ATPase bacteria
Orig transcript id	gnl\|cribi\|Naga_100711g1.698.mrna
Orig protein id	gnl\|cribi\|Naga_100711g1.698
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:17892..20406 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100711g1	gene9351	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9632	rna9632-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21072.1	cds9601	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:17892..20406+
coding sequence from alignment at KK037255.1:17892..20406+

mRNA sequence

>rna9632 ID=rna9632|Name=rna9632|organism=Nannochloropsis gaditana|type=mRNA|length=930bp
ATGGAAGCACGTCAAAGGAAAAATTTGCTCGGAGAGGATCCAGGACCAGC
CCTGCGGTCTGGTCGCAAAGACGGTCTGGTCCAGAAACTGTTACTCTCGT
TGAAGACCACCGGGATCCCCGACGAGTCCTTTTTCCCCACCGCCGGGCTC
TGGTTGCAGGAGAAAGCGCAGGCCCGCGAGAAAGGATTGAGGCTTCGGAT
TTTGAACTTGGACCTGAGATATAGCAATGAGAGCCACCGTCGGGACCTCA
GCTACCCTGGAGAACGAGCCAAACTCAAGCACTTGGGGCAAACCAAGAAT
AAACTCTGGGCCCGCAAGGCGTTAACGGCCAAGGTAACCTGTGAATATAC
CAACGACTTCTTGCGCCTCCACCACGACTGTGCGCCCTACGAAGGGATGC
AGCCCATTATCGACGTCGAATGACCCCTTCGTGTGGACCCGGACAGGGAC
GGGTAGGATGTGGGGGGTCTGAAGGTCTTTTCCTTTGGCTTGGCGGGGAC
TGAGTCGACCCCTCTATGGAAGGAACCGCACGCGGGACGTTGGAGAAGGA
CGGGAAAAACGCAAAGAAGAAGGACTGAGAATCGAAGAAACAGAGAGTAT
GAGCAACGTGGTGCCACCGCAAGTCAAGCGGCTACACCAGACATCGATTG
CCGGCGGGGGCGGGGTGTGATGTGCATGGAGGGTCGATGATGGAAGCGGA
AACAACTTTAAGGCTTCCATCATGTGTATGACCAATGATCGAAGAGAACG
CCAAGTTATGAATCCTGAGAAGAGGGGTGTGATGTGCATGGAGGGTCGCT
GATATAAGGGAACGCCAGGTTATGAATCCTGTCGGCTCGAGCTCTCCTGA
GAGTGGGATATTAGAAGGCTCGATGGCAGGTCTCAATCAATCCATAAATT
ATAACACACGAATACTGCAACAACACGTCC

protein sequence of rna9632

>rna9632-protein ID=rna9632-protein|Name=rna9632|organism=Nannochloropsis gaditana|type=polypeptide|length=334bp
MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPK
RPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKR
TAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTP
STHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKT
TLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFP
VHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIW
LLAQNEGTRTITVKAVGGGWAQEVVDRLGEVLNE

mRNA from alignment at KK037255.1:17892..20406+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9632 ID=rna9632|Name=rna9632|organism=Nannochloropsis gaditana|type=mRNA|length=2515bp|location=Sequence derived from alignment at KK037255.1:17892..20406+ (Nannochloropsis gaditana)
GCGTCCTTTATGCAATCTTGCAGGACCATCAAAGGAGACATTCCGTGCGG
AGCGCGCCGTTACACAGCCCTAAGCCGTCGAGGCCAAGCTTCAAACTAAT
TTGCCGTTTCGAGCAGTGGCCAGCTCTATCAAATTTTGCACTTGCTACTT
CTATGACACCAGCTTGTACTTTTGCATGTGAGGCGGTAGTGCATTTCTAC
TTGAGTCTTTCAAATTAATGCTTTCGCGGTTAACGGCTGACTTGAAGTTT
GTGATGGAATGTGCACCCTCACCTATCGCATGTATGTTGAATTAGTGTGG
TATATCAAGGTCCACGCTATTTCGCTTCTTCACGAGAATCAAAGTTCACG
ACACTGAGATCCTTCTACGCTTAAAGTACTATATGGCAGGCTCTGGTTAG
GTGCGCCTTCACTGAGCATAGCATGACTCACGCCGCAGATTTTCTTCACT
TCCCGCATTCAGGCCCAGGCCCAGAATGCCTCGTAAGAAACGCGAGTTTC
ATTCATCAACaatcctccttcgtcttttGTTCGTTCAGTCTCTTGTTTTA
TTTTTAGAGTCTGCCAGCTGTGTAACTCTTTCATCGCCAACACCTGAGGG
CATCATGTCATCGCGCTGTAAGTCATTCTTTTTGCGTGCTGCTCAAGATT
GATTACCTTCCTCGGTTGGTGTCATGGATTCTCAGTCTGAGACGATTTAA
ATATTTCAATCGATTAGAAATCTGATCTTGGTTCGTGCCCATCCCTACAG
TGCCCAAGCGCCCGTGCATCTTTTATTTTGGAAGTAGCCGGGTGGCGAGT
CAACACCACAAGCACCGACACCTTGGTTTGATACCTCCACCTTCATTCTG
CTTctgcacctcctcgctccccgtGGTTGCCTCCTTACCCTTGCCACGGC
ACAAACGCACTGCATTCCCCTCTTTATGGCCGATGCCCAGGAGACGTGTT
ATCCCCAAATTTCgtcatttctcctcctcctccgcctcctcttcctcctt
ttcctcctcttcctcctcgtctcagcccctgtccccttccactccatcct
ccacaccctccacccaccccgcGGCCACGCCATCCACCTACACATGTTCC
GCCACAAGCCCCGAAGAAATGGAGAGGATCGGGGAAGGACTGTGGGAAGC
GGGCTTGGCTGTGGGCCACACGGTTTTTTTGTACGGgtgcgaggaaggga
aagcgggaagaagggaggggggaagaaaaagaaaggagggggggagggag
ggactttTGCAAACCTTGTCACCTCGGGTttgcagaggaagggagggagg
gagggagggggaagaacagcaagggatgaagaaagagatggTGTCATAAT
GGTCCTTGATCTAATTTGCTGTTTCTCTTTCACGGTTTGAAGGGATCTGG
GCACAGGCAAGACGACGCTGGCTCGAGGGTTCATCCAGGCTGCGACAGCG
GGCgcggaagcaggaaggggggagggagggaaggaggtaatGGTCACGTC
GCCCTCCTACTTGCTCGACAATGTCTACCAAGCGTTCGATGCCGAGACGG
GGGACTCGTTTCCGtgagatggggagggagagatgaagggagggagggag
agagggtatCAGGGAGGCTGGGTGCATTCTctcgtcctcgccatcccCTT
AAACTCAATGTGCCTTTCTATTCCTTTTCCTACGTCCCCTTTCTGGCCAG
CGTCCACCACATGGATTTATACCGCCTGTCTACGGAAACGCACGATTTAA
AAATTCTGGGAATACCGGCCGTGCTAGTGGAAGGTATTATGCACAGaata
gaaggaggggatgggagagTAGGGGAGGAGTGTTTTGGATTTGGCACAAT
GTGTGATATGCTTGCTTTTCTCTGGATGGTCGCACAGGCTACGGatcatc
cttcctcctcaacaaAGAAGTCATTAAACCGaagtttttcctccctcctc
ttccctgtcactgtctcctcctccggaaTTTACAGGTCTTTGCCTCATTG
AATGGCCTGATCGGCTTGGCATTCATACGCCATCCACCCGTGTCGAAATT
TGGCTGTTGGCCCAGAACGAAGGAACACGGACGATCACAGTGAAAGCAgt
gggcgggggctgggCCCAAGAAGTAGTTGACAGGTTGGGAGAAGTGTTAA
ATGAATGACAACTGCGATGAACTAAGATTTGCGGTATGTAAGATTACAAA
CGGATGCACGCTCAGTTTAACATAACTAAGCTGGGTGATATATTCCTCGA
ATTGTaacttttctttttcttttgaCGAGGGCATACCTGTGGACATGTCC
GATCGCAATTTCATGACTTCAAACCTACCAACACAAGTAAGACAATCTAG
ATCTTTCCCAAGTGATGCAACCATTATTACTACCTTGCCAAGCATCTTAT
TTCTCGACGACAAAAGCTAACTACAATTAAAATTATGTTTTGCAAAATTT
TTGTTCTGTTTTCGTGTGCTGGCTTCATGCAACACGGGGCTAAGGCaatc
ttttttctttttgtg

Coding sequence (CDS) from alignment at KK037255.1:17892..20406+

>rna9632 ID=rna9632|Name=rna9632|organism=Nannochloropsis gaditana|type=CDS|length=5025bp|location=Sequence derived from alignment at KK037255.1:17892..20406+ (Nannochloropsis gaditana)
ATGCCTCGTAAGAAACGCGAGTTTCATTCATCAACaatcctccttcgtct
tttGTTCGTTCAGTCTCTTGTTTTATTTTTAGAGTCTGCCAGCTGTGTAA
CTCTTTCATCGCCAACACCTGAGGGCATCATGTCATCGCGCTTGCCCAAG
CGCCCGTGCATCTTTTATTTTGGAAGTAGCCGGGTGGCGAGTCAACACCA
CAAGCACCGACACCTTGGTTTGATACCTCCACCTTCATTCTGCTTctgca
cctcctcgctccccgtGGTTGCCTCCTTACCCTTGCCACGGCACAAACGC
ACTGCATTCCCCTCTTTATGGCCGATGCCCAGGAGACGTGTTATCCCCAA
ATTTCgtcatttctcctcctcctccgcctcctcttcctccttttcctcct
cttcctcctcgtctcagcccctgtccccttccactccatcctccacaccc
tccacccaccccgcGGCCACGCCATCCACCTACACATGTTCCGCCACAAG
CCCCGAAGAAATGGAGAGGATCGGGGAAGGACTGTGGGAAGCGGGCTTGG
CTGTGGGCCACACGGTTTTTTTGTACGGGGATCTGGGCACAGGCAAGACG
ACGCTGGCTCGAGGGTTCATCCAGGCTGCGACAGCGGGCgcggaagcagg
aaggggggagggagggaaggaggtaatGGTCACGTCGCCCTCCTACTTGC
TCGACAATGTCTACCAAGCGTTCGATGCCGAGACGGGGGACTCGTTTCCC
GTCCACCACATGGATTTATACCGCCTGTCTACGGAAACGCACGATTTAAA
AATTCTGGGAATACCGGCCGTGCTAGTGGAAGGTCTTTGCCTCATTGAAT
GGCCTGATCGGCTTGGCATTCATACGCCATCCACCCGTGTCGAAATTTGG
CTGTTGGCCCAGAACGAAGGAACACGGACGATCACAGTGAAAGCAgtggg
cgggggctgggCCCAAGAAGTAGTTGACAGGTTGGGAGAAGTGTTAAATG
AATGAATGCCTCGTAAGAAACGCGAGTTTCATTCATCAACaatcctcctt
cgtcttttGTTCGTTCAGTCTCTTGTTTTATTTTTAGAGTCTGCCAGCTG
TGTAACTCTTTCATCGCCAACACCTGAGGGCATCATGTCATCGCGCTTGC
CCAAGCGCCCGTGCATCTTTTATTTTGGAAGTAGCCGGGTGGCGAGTCAA
CACCACAAGCACCGACACCTTGGTTTGATACCTCCACCTTCATTCTGCTT
ctgcacctcctcgctccccgtGGTTGCCTCCTTACCCTTGCCACGGCACA
AACGCACTGCATTCCCCTCTTTATGGCCGATGCCCAGGAGACGTGTTATC
CCCAAATTTCgtcatttctcctcctcctccgcctcctcttcctccttttc
ctcctcttcctcctcgtctcagcccctgtccccttccactccatcctcca
caccctccacccaccccgcGGCCACGCCATCCACCTACACATGTTCCGCC
ACAAGCCCCGAAGAAATGGAGAGGATCGGGGAAGGACTGTGGGAAGCGGG
CTTGGCTGTGGGCCACACGGTTTTTTTGTACGGGGATCTGGGCACAGGCA
AGACGACGCTGGCTCGAGGGTTCATCCAGGCTGCGACAGCGGGCgcggaa
gcaggaaggggggagggagggaaggaggtaatGGTCACGTCGCCCTCCTA
CTTGCTCGACAATGTCTACCAAGCGTTCGATGCCGAGACGGGGGACTCGT
TTCCCGTCCACCACATGGATTTATACCGCCTGTCTACGGAAACGCACGAT
TTAAAAATTCTGGGAATACCGGCCGTGCTAGTGGAAGGTCTTTGCCTCAT
TGAATGGCCTGATCGGCTTGGCATTCATACGCCATCCACCCGTGTCGAAA
TTTGGCTGTTGGCCCAGAACGAAGGAACACGGACGATCACAGTGAAAGCA
gtgggcgggggctgggCCCAAGAAGTAGTTGACAGGTTGGGAGAAGTGTT
AAATGAATGAATGCCTCGTAAGAAACGCGAGTTTCATTCATCAACaatcc
tccttcgtcttttGTTCGTTCAGTCTCTTGTTTTATTTTTAGAGTCTGCC
AGCTGTGTAACTCTTTCATCGCCAACACCTGAGGGCATCATGTCATCGCG
CTTGCCCAAGCGCCCGTGCATCTTTTATTTTGGAAGTAGCCGGGTGGCGA
GTCAACACCACAAGCACCGACACCTTGGTTTGATACCTCCACCTTCATTC
TGCTTctgcacctcctcgctccccgtGGTTGCCTCCTTACCCTTGCCACG
GCACAAACGCACTGCATTCCCCTCTTTATGGCCGATGCCCAGGAGACGTG
TTATCCCCAAATTTCgtcatttctcctcctcctccgcctcctcttcctcc
ttttcctcctcttcctcctcgtctcagcccctgtccccttccactccatc
ctccacaccctccacccaccccgcGGCCACGCCATCCACCTACACATGTT
CCGCCACAAGCCCCGAAGAAATGGAGAGGATCGGGGAAGGACTGTGGGAA
GCGGGCTTGGCTGTGGGCCACACGGTTTTTTTGTACGGGGATCTGGGCAC
AGGCAAGACGACGCTGGCTCGAGGGTTCATCCAGGCTGCGACAGCGGGCg
cggaagcaggaaggggggagggagggaaggaggtaatGGTCACGTCGCCC
TCCTACTTGCTCGACAATGTCTACCAAGCGTTCGATGCCGAGACGGGGGA
CTCGTTTCCCGTCCACCACATGGATTTATACCGCCTGTCTACGGAAACGC
ACGATTTAAAAATTCTGGGAATACCGGCCGTGCTAGTGGAAGGTCTTTGC
CTCATTGAATGGCCTGATCGGCTTGGCATTCATACGCCATCCACCCGTGT
CGAAATTTGGCTGTTGGCCCAGAACGAAGGAACACGGACGATCACAGTGA
AAGCAgtgggcgggggctgggCCCAAGAAGTAGTTGACAGGTTGGGAGAA
GTGTTAAATGAATGAATGCCTCGTAAGAAACGCGAGTTTCATTCATCAAC
aatcctccttcgtcttttGTTCGTTCAGTCTCTTGTTTTATTTTTAGAGT
CTGCCAGCTGTGTAACTCTTTCATCGCCAACACCTGAGGGCATCATGTCA
TCGCGCTTGCCCAAGCGCCCGTGCATCTTTTATTTTGGAAGTAGCCGGGT
GGCGAGTCAACACCACAAGCACCGACACCTTGGTTTGATACCTCCACCTT
CATTCTGCTTctgcacctcctcgctccccgtGGTTGCCTCCTTACCCTTG
CCACGGCACAAACGCACTGCATTCCCCTCTTTATGGCCGATGCCCAGGAG
ACGTGTTATCCCCAAATTTCgtcatttctcctcctcctccgcctcctctt
cctccttttcctcctcttcctcctcgtctcagcccctgtccccttccact
ccatcctccacaccctccacccaccccgcGGCCACGCCATCCACCTACAC
ATGTTCCGCCACAAGCCCCGAAGAAATGGAGAGGATCGGGGAAGGACTGT
GGGAAGCGGGCTTGGCTGTGGGCCACACGGTTTTTTTGTACGGGGATCTG
GGCACAGGCAAGACGACGCTGGCTCGAGGGTTCATCCAGGCTGCGACAGC
GGGCgcggaagcaggaaggggggagggagggaaggaggtaatGGTCACGT
CGCCCTCCTACTTGCTCGACAATGTCTACCAAGCGTTCGATGCCGAGACG
GGGGACTCGTTTCCCGTCCACCACATGGATTTATACCGCCTGTCTACGGA
AACGCACGATTTAAAAATTCTGGGAATACCGGCCGTGCTAGTGGAAGGTC
TTTGCCTCATTGAATGGCCTGATCGGCTTGGCATTCATACGCCATCCACC
CGTGTCGAAATTTGGCTGTTGGCCCAGAACGAAGGAACACGGACGATCAC
AGTGAAAGCAgtgggcgggggctgggCCCAAGAAGTAGTTGACAGGTTGG
GAGAAGTGTTAAATGAATGAATGCCTCGTAAGAAACGCGAGTTTCATTCA
TCAACaatcctccttcgtcttttGTTCGTTCAGTCTCTTGTTTTATTTTT
AGAGTCTGCCAGCTGTGTAACTCTTTCATCGCCAACACCTGAGGGCATCA
TGTCATCGCGCTTGCCCAAGCGCCCGTGCATCTTTTATTTTGGAAGTAGC
CGGGTGGCGAGTCAACACCACAAGCACCGACACCTTGGTTTGATACCTCC
ACCTTCATTCTGCTTctgcacctcctcgctccccgtGGTTGCCTCCTTAC
CCTTGCCACGGCACAAACGCACTGCATTCCCCTCTTTATGGCCGATGCCC
AGGAGACGTGTTATCCCCAAATTTCgtcatttctcctcctcctccgcctc
ctcttcctccttttcctcctcttcctcctcgtctcagcccctgtcccctt
ccactccatcctccacaccctccacccaccccgcGGCCACGCCATCCACC
TACACATGTTCCGCCACAAGCCCCGAAGAAATGGAGAGGATCGGGGAAGG
ACTGTGGGAAGCGGGCTTGGCTGTGGGCCACACGGTTTTTTTGTACGGGG
ATCTGGGCACAGGCAAGACGACGCTGGCTCGAGGGTTCATCCAGGCTGCG
ACAGCGGGCgcggaagcaggaaggggggagggagggaaggaggtaatGGT
CACGTCGCCCTCCTACTTGCTCGACAATGTCTACCAAGCGTTCGATGCCG
AGACGGGGGACTCGTTTCCCGTCCACCACATGGATTTATACCGCCTGTCT
ACGGAAACGCACGATTTAAAAATTCTGGGAATACCGGCCGTGCTAGTGGA
AGGTCTTTGCCTCATTGAATGGCCTGATCGGCTTGGCATTCATACGCCAT
CCACCCGTGTCGAAATTTGGCTGTTGGCCCAGAACGAAGGAACACGGACG
ATCACAGTGAAAGCAgtgggcgggggctgggCCCAAGAAGTAGTTGACAG
GTTGGGAGAAGTGTTAAATGAATGA

Synonyms

Publications