EWM21072.1, cds9601 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|585101110|gb|EWM21072.1| (Uncharacterized domain UPF0079, ATPase bacteria [Nannochloropsis gaditana]) HSP 1 Score: 676.011 bits (1743), Expect = 0.000e+0 Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0
Query: 1 MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPKRPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKRTAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWLLAQNEGTRTITVKAVGGGWAQEVVDRLGEVLNE 334
MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPKRPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKRTAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWLLAQNEGTRTITVKAVGGGWAQEVVDRLGEVLNE
Sbjct: 1 MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPKRPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKRTAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWLLAQNEGTRTITVKAVGGGWAQEVVDRLGEVLNE 334
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|553187985|ref|XP_005854713.1| (hypothetical protein NGA_0368200, partial [Nannochloropsis gaditana CCMP526] >gi|422294346|gb|EKU21646.1| hypothetical protein NGA_0368200, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 377.481 bits (968), Expect = 7.065e-130 Identity = 191/192 (99.48%), Postives = 191/192 (99.48%), Query Frame = 0
Query: 1 MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPKRPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKRTAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLY 192
MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPKRPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKRTAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSA SPEEMERIGEGLWEAGLAVGHTVFLY
Sbjct: 1 MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPKRPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKRTAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSAISPEEMERIGEGLWEAGLAVGHTVFLY 192
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|298708725|emb|CBJ30687.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 130.954 bits (328), Expect = 1.189e-32 Identity = 83/217 (38.25%), Postives = 105/217 (48.39%), Query Frame = 0
Query: 110 PRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWLLAQNEGTRTITVKAVGGGWAQEVVD 326
PRR I F+ + +S + P A +T S SPEEME G + A + G V L+GDLGTGKT ARGF++A G + VTSPSYLLDN Y+ D + +HHMDLYRL T DL++LGIP V +CL+EWPDRLG P R+++ L A NE R + G W V D
Sbjct: 33 PRRGDISLFKTTAQRDKHMASIQDGRGGHTRGMTAMPKVDGGV---ACTATLEVSVASPEEMEETG-AFFGADASGGDVVLLWGDLGTGKTCFARGFVRARV---------GDPGLAVTSPSYLLDNTYEVAD----EDLTLHHMDLYRLQGGT-DLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAVNEEERILKFIGHGAWWTGVVED 231
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|953502289|emb|CEG36475.1| (family atpase [Plasmopara halstedii]) HSP 1 Score: 105.145 bits (261), Expect = 1.423e-23 Identity = 76/209 (36.36%), Postives = 104/209 (49.76%), Query Frame = 0
Query: 118 FRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTET-HDLKILGIPAVLVEGLCLIEWPDRLGIHT-PSTRVEIWLLAQNE--GTRTITVKAVGGGWAQ 322
RH +S A+ SSFS + H TYT S EME++GE L + A G +FLYGDLG GKT LARGF++A T + ++VTSP+YLL N Y E + V+H+DLYRL T T D LG+ G+ LIEWPDR + P+ R+++ +L E G R + ++ G W +
Sbjct: 6 LRHRLASFAAVSSFS-------------IEKCVTLHRTQHFCTYT--TRSEREMEKLGERLAQDRRA-GDVLFLYGDLGCGKTCLARGFVRAYTKRS---------NLLVTSPTYLLVNTYD----EAKELPIVYHVDLYRLETVTEQDTVALGLAEAFKRGVTLIEWPDRFEKQSIPNERLDVRILYDEEDIGIRHVEIQPKGERWDK 185
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|570310818|gb|ETO58766.1| (YjeE family ATPase [Phytophthora parasitica P1976]) HSP 1 Score: 99.3673 bits (246), Expect = 2.844e-21 Identity = 71/216 (32.87%), Postives = 107/216 (49.54%), Query Frame = 0
Query: 119 RHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTET-HDLKILGIPAVLVEGLCLIEWPDRLGIHT-PSTRVEIWLLAQNEG--TRTITVKAVGGGWAQEVVDRLGE 330
R ++ S +FS+S+S + SP++ + H + S +ME +GE L VG +FL+GDLG GKT LARGFIQ+ T G K++ VTSP+YLL N Y E + V+H+DLYRL T D LG+ G+ L+EWP+R + P+ R+ + + E R + ++ +G W + D + E
Sbjct: 12 RQYTRRCVSFGAFSTSASKNS--SPTSDAWLSRVH----------TTKSQRDMEELGEWL-ARDRQVGDVLFLHGDLGCGKTCLARGFIQSYT---------GQKDLAVTSPTYLLVNTYD----EVAELPTVYHVDLYRLDAVTEQDAVALGLAEAFERGVTLVEWPERFDEKSIPTERLNVRISYDEEDPEIRHVELQPIGERWMKLFNDDIKE 201
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|566007072|gb|ETI29983.1| (YjeE family ATPase [Phytophthora parasitica P1569] >gi|567948382|gb|ETK74131.1| YjeE family ATPase [Phytophthora parasitica] >gi|567977051|gb|ETL27562.1| YjeE family ATPase [Phytophthora parasitica] >gi|568006548|gb|ETL80803.1| YjeE family ATPase [Phytophthora parasitica] >gi|568036385|gb|ETM33996.1| YjeE family ATPase [Phytophthora parasitica] >gi|570310824|gb|ETO58772.1| YjeE family ATPase [Phytophthora parasitica P1976] >gi|570938397|gb|ETP03654.1| YjeE family ATPase [Phytophthora parasitica CJ01A1] >gi|570964709|gb|ETP27828.1| YjeE family ATPase [Phytophthora parasitica P10297]) HSP 1 Score: 98.9821 bits (245), Expect = 7.251e-21 Identity = 71/216 (32.87%), Postives = 107/216 (49.54%), Query Frame = 0
Query: 119 RHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTET-HDLKILGIPAVLVEGLCLIEWPDRLGIHT-PSTRVEIWLLAQNEG--TRTITVKAVGGGWAQEVVDRLGE 330
R ++ S +FS+S+S + SP++ + H + S +ME +GE L VG +FL+GDLG GKT LARGFIQ+ T G K++ VTSP+YLL N Y E + V+H+DLYRL T D LG+ G+ L+EWP+R + P+ R+ + + E R + ++ +G W + D + E
Sbjct: 39 RQYTRRCVSFGAFSTSASKNS--SPTSDAWLSRVH----------TTKSQRDMEELGEWL-ARDRQVGDVLFLHGDLGCGKTCLARGFIQSYT---------GQKDLAVTSPTYLLVNTYD----EVAELPTVYHVDLYRLDAVTEQDAVALGLAEAFERGVTLVEWPERFDEKSIPTERLNVRISYDEEDPEIRHVELQPIGERWMKLFNDDIKE 228
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|675177215|ref|XP_008897492.1| (YjeE family ATPase [Phytophthora parasitica INRA-310] >gi|568103335|gb|ETN18006.1| YjeE family ATPase [Phytophthora parasitica INRA-310]) HSP 1 Score: 98.2117 bits (243), Expect = 1.786e-20 Identity = 71/216 (32.87%), Postives = 106/216 (49.07%), Query Frame = 0
Query: 119 RHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTET-HDLKILGIPAVLVEGLCLIEWPDRLGIHT-PSTRVEIWLLAQNEG--TRTITVKAVGGGWAQEVVDRLGE 330
R ++ S +FS+S+S + SP++ H + S +ME +GE L VG +FL+GDLG GKT LARGFIQ+ T G K++ VTSP+YLL N Y E + V+H+DLYRL T D LG+ G+ L+EWP+R + P+ R+ + + E R + ++ +G W + D + E
Sbjct: 39 RQYTRRCVSFGAFSTSASKNS--SPTSDVWLSRVH----------TTKSQRDMEELGEWL-ARDRQVGDVLFLHGDLGCGKTCLARGFIQSYT---------GQKDLAVTSPTYLLVNTYD----EVAELPTVYHVDLYRLDAVTEQDAVALGLAEAFERGVTLVEWPERFDEKSIPTERLNVRISYDEEDPEIRHVELQPIGERWMKLFNDDIKE 228
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|813136468|ref|XP_012198681.1| (hypothetical protein SPRG_04361 [Saprolegnia parasitica CBS 223.65] >gi|641536578|gb|KDO30459.1| hypothetical protein SPRG_04361 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 95.9005 bits (237), Expect = 1.874e-20 Identity = 65/158 (41.14%), Postives = 85/158 (53.80%), Query Frame = 0
Query: 166 TSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRL-STETHDLKILGIPAVLVEGLCLIEWPDRLGIH-TPSTRVEIWL-LAQNEGTRTITVKAVGGGW 320
+S E ME G GL A ++ T+FL GDLG GKT ARGF++A T A ++ VTSP+YLL N Y DA S ++HMDLYRL S D K +G+ + LIEWPDRL P+ R+E+ + E R + +KA G W
Sbjct: 3 SSAEAMETFGAGL-AAHVSCPSTIFLVGDLGCGKTCFARGFVRAWTDDA---------DMHVTSPTYLLLNTYD--DATMARS--LYHMDLYRLDSVSAVDAKAMGLEDAFASSVNLIEWPDRLTSDLVPADRLEVHIAYTDTEDERAVELKAFGPSW 146
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|224001964|ref|XP_002290654.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974076|gb|EED92406.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 100.908 bits (250), Expect = 3.297e-20 Identity = 69/192 (35.94%), Postives = 95/192 (49.48%), Query Frame = 0
Query: 144 STPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWLLAQN-----------EGTRTITVKAVGGGWAQEV 324
S+ + T+ S C T+ E+ME IG GL G G + L GDLG GKT +RGFI+ T G ++ VTSP+YLL N Y +T V+HMDLYRLS +DL L + V G+ LIEWP RL + P TR++I L + +R +T++ G W Q++
Sbjct: 230 SSDDTNTGTNDKQRYSLKLCVPTA-EDMEDIG-GLLSVGSKKGDIILLDGDLGAGKTCFSRGFIRGRT---------GMEDERVTSPTYLLSNSYSVDGGKT----KVYHMDLYRLSGSANDLLPLDLENVFTNGISLIEWPSRLNVK-PETRLDITLTIDSTIQQLDDDDDDSKSRFMTLEPYGDRWIQQL 405
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|544701338|ref|WP_021132420.1| (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE [Phaeospirillum fulvum] >gi|528191208|gb|EPY01521.1| ATPase or kinase [Phaeospirillum fulvum MGU-K5]) HSP 1 Score: 95.1301 bits (235), Expect = 3.590e-20 Identity = 69/161 (42.86%), Postives = 92/161 (57.14%), Query Frame = 0
Query: 173 RIGEGLWEAGLAV-GHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWL-LAQNEGTRTITVKAVGGGWAQEVVDRLGEV 331
R+G+GL A LA G + L+G LG GK+TLAR FI+A T+ E V SP++ L VY D+ +G P+ H DLYRL H + L I EG+CLIEWPDRLG P+ R+++ L A+NEG+R + A G WA DR+GE+
Sbjct: 17 RLGQGL--AALARPGDVIALHGGLGAGKSTLARAFIRALTSPDEE----------VPSPTFTLVQVY---DSSSG---PLWHFDLYRLDRPDHAFE-LDIEDAFAEGICLIEWPDRLGPLLPAARLDLRLDEAENEGSRRAHLTAT-GSWA----DRIGEL 153 The following BLAST results are available for this feature:
BLAST of EWM21072.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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