EWM21072.1, cds9601 (CDS) Nannochloropsis gaditana

Overview
NameEWM21072.1
Unique Namecds9601
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:18367..18508 +
Alignment locationKK037255.1:18642..19077 +
Alignment locationKK037255.1:19284..19454 +
Alignment locationKK037255.1:19592..19674 +
Alignment locationKK037255.1:19877..20049 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21072.1
ProductUncharacterized domain UPF0079, ATPase bacteria
Orig transcript idgnl|cribi|Naga_100711g1.698.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:18367..18508 +
KK037255.1supercontigKK037255.1:18642..19077 +
KK037255.1supercontigKK037255.1:19284..19454 +
KK037255.1supercontigKK037255.1:19592..19674 +
KK037255.1supercontigKK037255.1:19877..20049 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003442T6A_TsaE
Homology
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|585101110|gb|EWM21072.1| (Uncharacterized domain UPF0079, ATPase bacteria [Nannochloropsis gaditana])

HSP 1 Score: 676.011 bits (1743), Expect = 0.000e+0
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0
Query:    1 MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPKRPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKRTAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWLLAQNEGTRTITVKAVGGGWAQEVVDRLGEVLNE 334
            MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPKRPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKRTAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWLLAQNEGTRTITVKAVGGGWAQEVVDRLGEVLNE
Sbjct:    1 MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPKRPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKRTAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWLLAQNEGTRTITVKAVGGGWAQEVVDRLGEVLNE 334          
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|553187985|ref|XP_005854713.1| (hypothetical protein NGA_0368200, partial [Nannochloropsis gaditana CCMP526] >gi|422294346|gb|EKU21646.1| hypothetical protein NGA_0368200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 377.481 bits (968), Expect = 7.065e-130
Identity = 191/192 (99.48%), Postives = 191/192 (99.48%), Query Frame = 0
Query:    1 MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPKRPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKRTAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLY 192
            MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPKRPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKRTAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSA SPEEMERIGEGLWEAGLAVGHTVFLY
Sbjct:    1 MPRKKREFHSSTILLRLLFVQSLVLFLESASCVTLSSPTPEGIMSSRLPKRPCIFYFGSSRVASQHHKHRHLGLIPPPSFCFCTSSLPVVASLPLPRHKRTAFPSLWPMPRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSAISPEEMERIGEGLWEAGLAVGHTVFLY 192          
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|298708725|emb|CBJ30687.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 130.954 bits (328), Expect = 1.189e-32
Identity = 83/217 (38.25%), Postives = 105/217 (48.39%), Query Frame = 0
Query:  110 PRRRVIPKFRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWLLAQNEGTRTITVKAVGGGWAQEVVD 326
            PRR  I  F+  +      +S             + P         A  +T   S  SPEEME  G   + A  + G  V L+GDLGTGKT  ARGF++A           G   + VTSPSYLLDN Y+  D    +   +HHMDLYRL   T DL++LGIP V    +CL+EWPDRLG   P  R+++ L A NE  R +     G  W   V D
Sbjct:   33 PRRGDISLFKTTAQRDKHMASIQDGRGGHTRGMTAMPKVDGGV---ACTATLEVSVASPEEMEETG-AFFGADASGGDVVLLWGDLGTGKTCFARGFVRARV---------GDPGLAVTSPSYLLDNTYEVAD----EDLTLHHMDLYRLQGGT-DLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAVNEEERILKFIGHGAWWTGVVED 231          
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|953502289|emb|CEG36475.1| (family atpase [Plasmopara halstedii])

HSP 1 Score: 105.145 bits (261), Expect = 1.423e-23
Identity = 76/209 (36.36%), Postives = 104/209 (49.76%), Query Frame = 0
Query:  118 FRHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTET-HDLKILGIPAVLVEGLCLIEWPDRLGIHT-PSTRVEIWLLAQNE--GTRTITVKAVGGGWAQ 322
             RH  +S A+ SSFS                  + H      TYT    S  EME++GE L +   A G  +FLYGDLG GKT LARGF++A T  +          ++VTSP+YLL N Y     E  +   V+H+DLYRL T T  D   LG+      G+ LIEWPDR    + P+ R+++ +L   E  G R + ++  G  W +
Sbjct:    6 LRHRLASFAAVSSFS-------------IEKCVTLHRTQHFCTYT--TRSEREMEKLGERLAQDRRA-GDVLFLYGDLGCGKTCLARGFVRAYTKRS---------NLLVTSPTYLLVNTYD----EAKELPIVYHVDLYRLETVTEQDTVALGLAEAFKRGVTLIEWPDRFEKQSIPNERLDVRILYDEEDIGIRHVEIQPKGERWDK 185          
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|570310818|gb|ETO58766.1| (YjeE family ATPase [Phytophthora parasitica P1976])

HSP 1 Score: 99.3673 bits (246), Expect = 2.844e-21
Identity = 71/216 (32.87%), Postives = 107/216 (49.54%), Query Frame = 0
Query:  119 RHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTET-HDLKILGIPAVLVEGLCLIEWPDRLGIHT-PSTRVEIWLLAQNEG--TRTITVKAVGGGWAQEVVDRLGE 330
            R ++    S  +FS+S+S +   SP++ +     H          +  S  +ME +GE L      VG  +FL+GDLG GKT LARGFIQ+ T         G K++ VTSP+YLL N Y     E  +   V+H+DLYRL   T  D   LG+      G+ L+EWP+R    + P+ R+ + +    E    R + ++ +G  W +   D + E
Sbjct:   12 RQYTRRCVSFGAFSTSASKNS--SPTSDAWLSRVH----------TTKSQRDMEELGEWL-ARDRQVGDVLFLHGDLGCGKTCLARGFIQSYT---------GQKDLAVTSPTYLLVNTYD----EVAELPTVYHVDLYRLDAVTEQDAVALGLAEAFERGVTLVEWPERFDEKSIPTERLNVRISYDEEDPEIRHVELQPIGERWMKLFNDDIKE 201          
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|566007072|gb|ETI29983.1| (YjeE family ATPase [Phytophthora parasitica P1569] >gi|567948382|gb|ETK74131.1| YjeE family ATPase [Phytophthora parasitica] >gi|567977051|gb|ETL27562.1| YjeE family ATPase [Phytophthora parasitica] >gi|568006548|gb|ETL80803.1| YjeE family ATPase [Phytophthora parasitica] >gi|568036385|gb|ETM33996.1| YjeE family ATPase [Phytophthora parasitica] >gi|570310824|gb|ETO58772.1| YjeE family ATPase [Phytophthora parasitica P1976] >gi|570938397|gb|ETP03654.1| YjeE family ATPase [Phytophthora parasitica CJ01A1] >gi|570964709|gb|ETP27828.1| YjeE family ATPase [Phytophthora parasitica P10297])

HSP 1 Score: 98.9821 bits (245), Expect = 7.251e-21
Identity = 71/216 (32.87%), Postives = 107/216 (49.54%), Query Frame = 0
Query:  119 RHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTET-HDLKILGIPAVLVEGLCLIEWPDRLGIHT-PSTRVEIWLLAQNEG--TRTITVKAVGGGWAQEVVDRLGE 330
            R ++    S  +FS+S+S +   SP++ +     H          +  S  +ME +GE L      VG  +FL+GDLG GKT LARGFIQ+ T         G K++ VTSP+YLL N Y     E  +   V+H+DLYRL   T  D   LG+      G+ L+EWP+R    + P+ R+ + +    E    R + ++ +G  W +   D + E
Sbjct:   39 RQYTRRCVSFGAFSTSASKNS--SPTSDAWLSRVH----------TTKSQRDMEELGEWL-ARDRQVGDVLFLHGDLGCGKTCLARGFIQSYT---------GQKDLAVTSPTYLLVNTYD----EVAELPTVYHVDLYRLDAVTEQDAVALGLAEAFERGVTLVEWPERFDEKSIPTERLNVRISYDEEDPEIRHVELQPIGERWMKLFNDDIKE 228          
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|675177215|ref|XP_008897492.1| (YjeE family ATPase [Phytophthora parasitica INRA-310] >gi|568103335|gb|ETN18006.1| YjeE family ATPase [Phytophthora parasitica INRA-310])

HSP 1 Score: 98.2117 bits (243), Expect = 1.786e-20
Identity = 71/216 (32.87%), Postives = 106/216 (49.07%), Query Frame = 0
Query:  119 RHFSSSSASSSSFSSSSSSSQPLSPSTPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTET-HDLKILGIPAVLVEGLCLIEWPDRLGIHT-PSTRVEIWLLAQNEG--TRTITVKAVGGGWAQEVVDRLGE 330
            R ++    S  +FS+S+S +   SP++       H          +  S  +ME +GE L      VG  +FL+GDLG GKT LARGFIQ+ T         G K++ VTSP+YLL N Y     E  +   V+H+DLYRL   T  D   LG+      G+ L+EWP+R    + P+ R+ + +    E    R + ++ +G  W +   D + E
Sbjct:   39 RQYTRRCVSFGAFSTSASKNS--SPTSDVWLSRVH----------TTKSQRDMEELGEWL-ARDRQVGDVLFLHGDLGCGKTCLARGFIQSYT---------GQKDLAVTSPTYLLVNTYD----EVAELPTVYHVDLYRLDAVTEQDAVALGLAEAFERGVTLVEWPERFDEKSIPTERLNVRISYDEEDPEIRHVELQPIGERWMKLFNDDIKE 228          
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|813136468|ref|XP_012198681.1| (hypothetical protein SPRG_04361 [Saprolegnia parasitica CBS 223.65] >gi|641536578|gb|KDO30459.1| hypothetical protein SPRG_04361 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 95.9005 bits (237), Expect = 1.874e-20
Identity = 65/158 (41.14%), Postives = 85/158 (53.80%), Query Frame = 0
Query:  166 TSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRL-STETHDLKILGIPAVLVEGLCLIEWPDRLGIH-TPSTRVEIWL-LAQNEGTRTITVKAVGGGW 320
            +S E ME  G GL  A ++   T+FL GDLG GKT  ARGF++A T  A         ++ VTSP+YLL N Y   DA    S  ++HMDLYRL S    D K +G+       + LIEWPDRL     P+ R+E+ +     E  R + +KA G  W
Sbjct:    3 SSAEAMETFGAGL-AAHVSCPSTIFLVGDLGCGKTCFARGFVRAWTDDA---------DMHVTSPTYLLLNTYD--DATMARS--LYHMDLYRLDSVSAVDAKAMGLEDAFASSVNLIEWPDRLTSDLVPADRLEVHIAYTDTEDERAVELKAFGPSW 146          
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|224001964|ref|XP_002290654.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974076|gb|EED92406.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 100.908 bits (250), Expect = 3.297e-20
Identity = 69/192 (35.94%), Postives = 95/192 (49.48%), Query Frame = 0
Query:  144 STPSSTPSTHPAATPSTYTCSATSPEEMERIGEGLWEAGLAVGHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWLLAQN-----------EGTRTITVKAVGGGWAQEV 324
            S+  +   T+     S   C  T+ E+ME IG GL   G   G  + L GDLG GKT  +RGFI+  T         G ++  VTSP+YLL N Y     +T     V+HMDLYRLS   +DL  L +  V   G+ LIEWP RL +  P TR++I L   +             +R +T++  G  W Q++
Sbjct:  230 SSDDTNTGTNDKQRYSLKLCVPTA-EDMEDIG-GLLSVGSKKGDIILLDGDLGAGKTCFSRGFIRGRT---------GMEDERVTSPTYLLSNSYSVDGGKT----KVYHMDLYRLSGSANDLLPLDLENVFTNGISLIEWPSRLNVK-PETRLDITLTIDSTIQQLDDDDDDSKSRFMTLEPYGDRWIQQL 405          
BLAST of EWM21072.1 vs. NCBI_GenBank
Match: gi|544701338|ref|WP_021132420.1| (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE [Phaeospirillum fulvum] >gi|528191208|gb|EPY01521.1| ATPase or kinase [Phaeospirillum fulvum MGU-K5])

HSP 1 Score: 95.1301 bits (235), Expect = 3.590e-20
Identity = 69/161 (42.86%), Postives = 92/161 (57.14%), Query Frame = 0
Query:  173 RIGEGLWEAGLAV-GHTVFLYGDLGTGKTTLARGFIQAATAGAEAGRGEGGKEVMVTSPSYLLDNVYQAFDAETGDSFPVHHMDLYRLSTETHDLKILGIPAVLVEGLCLIEWPDRLGIHTPSTRVEIWL-LAQNEGTRTITVKAVGGGWAQEVVDRLGEV 331
            R+G+GL  A LA  G  + L+G LG GK+TLAR FI+A T+  E           V SP++ L  VY   D+ +G   P+ H DLYRL    H  + L I     EG+CLIEWPDRLG   P+ R+++ L  A+NEG+R   + A  G WA    DR+GE+
Sbjct:   17 RLGQGL--AALARPGDVIALHGGLGAGKSTLARAFIRALTSPDEE----------VPSPTFTLVQVY---DSSSG---PLWHFDLYRLDRPDHAFE-LDIEDAFAEGICLIEWPDRLGPLLPAARLDLRLDEAENEGSRRAHLTAT-GSWA----DRIGEL 153          
The following BLAST results are available for this feature:
BLAST of EWM21072.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101110|gb|EWM21072.1|0.000e+0100.00Uncharacterized domain UPF0079, ATPase bacteria [N... [more]
gi|553187985|ref|XP_005854713.1|7.065e-13099.48hypothetical protein NGA_0368200, partial [Nannoch... [more]
gi|298708725|emb|CBJ30687.1|1.189e-3238.25conserved unknown protein [Ectocarpus siliculosus][more]
gi|953502289|emb|CEG36475.1|1.423e-2336.36family atpase [Plasmopara halstedii][more]
gi|570310818|gb|ETO58766.1|2.844e-2132.87YjeE family ATPase [Phytophthora parasitica P1976][more]
gi|566007072|gb|ETI29983.1|7.251e-2132.87YjeE family ATPase [Phytophthora parasitica P1569]... [more]
gi|675177215|ref|XP_008897492.1|1.786e-2032.87YjeE family ATPase [Phytophthora parasitica INRA-3... [more]
gi|813136468|ref|XP_012198681.1|1.874e-2041.14hypothetical protein SPRG_04361 [Saprolegnia paras... [more]
gi|224001964|ref|XP_002290654.1|3.297e-2035.94predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|544701338|ref|WP_021132420.1|3.590e-2042.86tRNA (adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9632rna9632Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications