rna9625, rna9625 (mRNA) Nannochloropsis gaditana

Overview
Namerna9625
Unique Namerna9625
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length767
Alignment locationKK037254.1:314678..315461 -

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Properties
Property NameValue
Productdna-binding regulatory family
Orig transcript idgnl|cribi|Naga_101286g2.1470.mrna
Orig protein idgnl|cribi|Naga_101286g2.1470
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:314678..315461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101286g2gene9344Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9625rna9625-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21079.1cds9594Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9625 ID=rna9625|Name=rna9625|organism=Nannochloropsis gaditana|type=mRNA|length=767bp
ATGACTCCCCGTTTCAATTCCCCATTTGCACGCAGACGGGATCATGGCCG
TGGAAACTTCCGCACATTCCACACCCGAGACTTTGACAAAGCACGCAGCG
GAGGGACCTTAACATCGCAGCCCATATACCCCAAACGAAAGCACAACACA
AACACCAAAGTACCCAGTATAAAAGCTTCCGCTGTCGCGCCAGCAGATAT
GGCGTCCAATTTCTCCACAGAATCAGAAATGGAAAAGTCTCCGGCCAAGT
TGGGTTTAAAAGAGGAGGAATACGATCGCTTGGTGCATGTGCACGCCTTC
CGCCAGCGCCACCTCCGGACAATGACTGGGGTAGGGCGACGAGAACAGAG
ACTCCGTCGACTACACATTGACAGAGCAATAGCGGGCAGCGGGGAAAAAG
GCGCATATCTGTGCGAGCTCCCCGAGAAAGATGAGGTGCGGGGCAGGGTT
TCCCACCCAAACAGTCCTTTCACCCTATCCCCTCTCTTCTGTGTTCAGGG
ATCTTGAATCCTCTCCCTCCTCTTCTGCTCATAACTCGCTCCCCTCAAGC
AACCTGCGTAGGAGGCTCAATCAGTTTGCATTATTCCATCCCCGTGTTCT
TTCTTGTCCTTCCCCCACCGTCCAGATCCATCCCCCTCTCCCCCTCTGCG
ACGAGTGGACCCCCCGCCCGGCGCGCCCCGTGGAAAGCCTCCGGCCCTGG
AACGCACAGGACTCCCTGTCTTTCCGTCTACACACGTATTTGTGGACCGG
CTCGGGAGGGCTGACAA
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protein sequence of rna9625

>rna9625-protein ID=rna9625-protein|Name=rna9625|organism=Nannochloropsis gaditana|type=polypeptide|length=139bp
MYTRMARPWSEISFSLRSTSSPPPTTIPSPARPHSNIITSTSVRDMMMMA
GHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDVTDIRLAAAI
SKAKACNVPKDNIEAALKRGVEGKGGANMEAVQAPPPSL
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mRNA from alignment at KK037254.1:314678..315461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9625 ID=rna9625|Name=rna9625|organism=Nannochloropsis gaditana|type=mRNA|length=784bp|location=Sequence derived from alignment at KK037254.1:314678..315461- (Nannochloropsis gaditana)
ATGTACACAAGAATGGCACGCCCGTGGTCAGAGATCTCATTCAGCCTTCG
ATCTACCTCCTCCCCCCCTCCTACTACGATCCCCTCCCCGGCTCGTCCCC
ATTCTAATATCATGTAAGTGCCGTGACATGATGCCATTCATGGGATTTTA
CCAACAAAGGCGCCATGCCAACCTACACCAGCACAAGCACCAGCGTACGG
GACATGATGATGATGGCTGGGCATTCGAAGTGGGCGAAGATAAAGCGAGC
GAAAGGCTCCAACGACGGTAAGAGGTTAAACGCGTGACGCGTCGGCCAAT
ACATCTCCACGTCCTCATCTCTTTCACGAACGCCGTCTGTCCAGCCAAGC
GGGCCATTCTCTTCACCAAGCTGGCGGTGGAATTGAGTGAAGCCTCCCGG
CAGGCCCAGGGGGACGTGACGGACATCCGTCTGGCCGCCGCCATCAGTAA
GGCAAAAGCCTGCAACGTGCCCAAAGACAACATCGAAGCCGCACTCAAGA
GGGGCGTGGAAGGGAAAGGCGGCGCCAATATGGAAGCGGTGGGTAGTCAC
ATCCATTTCCCCCCCCCCTCCCTCGCTTCCTCCCTCGCACCCTCCCGCCT
GCCCTCCCCTCCCCCTCATGTGAACGAGCTCGCATCGGTCTTGCCTCACC
CTCCTTGTCGTTCTCATATCCCTCCCTTCCTCCCTCCCTACCCCCCTCTC
CTTCTATTTTCTTCCTTCCTCCCTCGCCCCCTTCTCAGGTCACGTACGAG
GGTATAGGTCCAGGCTCCACCGCCATCATTGTAG
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Coding sequence (CDS) from alignment at KK037254.1:314678..315461-

>rna9625 ID=rna9625|Name=rna9625|organism=Nannochloropsis gaditana|type=CDS|length=1680bp|location=Sequence derived from alignment at KK037254.1:314678..315461- (Nannochloropsis gaditana)
GTCCAGGCTCCACCGCCATCATTGTAGCCAAGCGGGCCATTCTCTTCACC
AAGCTGGCGGTGGAATTGAGTGAAGCCTCCCGGCAGGCCCAGGGGGACGT
GACGGACATCCGTCTGGCCGCCGCCATCAGTAAGGCAAAAGCCTGCAACG
TGCCCAAAGACAACATCGAAGCCGCACTCAAGAGGGGCGTGGAAGGGAAA
GGCGGCGCCAATATGGAAGCGCACAAGCACCAGCGTACGGGACATGATGA
TGATGGCTGGGCATTCGAAGTGGGCGAAGATAAAGCGAGCGAAAGGCTCC
AACGACGATGTACACAAGAATGGCACGCCCGTGGTCAGAGATCTCATTCA
GCCTTCGATCTACCTCCTCCCCCCCTCCTACTACGATCCCCTCCCCGGCT
CGTCCCCATTCTAATATCATGTCCAGGCTCCACCGCCATCATTGTAGCCA
AGCGGGCCATTCTCTTCACCAAGCTGGCGGTGGAATTGAGTGAAGCCTCC
CGGCAGGCCCAGGGGGACGTGACGGACATCCGTCTGGCCGCCGCCATCAG
TAAGGCAAAAGCCTGCAACGTGCCCAAAGACAACATCGAAGCCGCACTCA
AGAGGGGCGTGGAAGGGAAAGGCGGCGCCAATATGGAAGCGCACAAGCAC
CAGCGTACGGGACATGATGATGATGGCTGGGCATTCGAAGTGGGCGAAGA
TAAAGCGAGCGAAAGGCTCCAACGACGATGTACACAAGAATGGCACGCCC
GTGGTCAGAGATCTCATTCAGCCTTCGATCTACCTCCTCCCCCCCTCCTA
CTACGATCCCCTCCCCGGCTCGTCCCCATTCTAATATCATGTCCAGGCTC
CACCGCCATCATTGTAGCCAAGCGGGCCATTCTCTTCACCAAGCTGGCGG
TGGAATTGAGTGAAGCCTCCCGGCAGGCCCAGGGGGACGTGACGGACATC
CGTCTGGCCGCCGCCATCAGTAAGGCAAAAGCCTGCAACGTGCCCAAAGA
CAACATCGAAGCCGCACTCAAGAGGGGCGTGGAAGGGAAAGGCGGCGCCA
ATATGGAAGCGCACAAGCACCAGCGTACGGGACATGATGATGATGGCTGG
GCATTCGAAGTGGGCGAAGATAAAGCGAGCGAAAGGCTCCAACGACGATG
TACACAAGAATGGCACGCCCGTGGTCAGAGATCTCATTCAGCCTTCGATC
TACCTCCTCCCCCCCTCCTACTACGATCCCCTCCCCGGCTCGTCCCCATT
CTAATATCATGTCCAGGCTCCACCGCCATCATTGTAGCCAAGCGGGCCAT
TCTCTTCACCAAGCTGGCGGTGGAATTGAGTGAAGCCTCCCGGCAGGCCC
AGGGGGACGTGACGGACATCCGTCTGGCCGCCGCCATCAGTAAGGCAAAA
GCCTGCAACGTGCCCAAAGACAACATCGAAGCCGCACTCAAGAGGGGCGT
GGAAGGGAAAGGCGGCGCCAATATGGAAGCGCACAAGCACCAGCGTACGG
GACATGATGATGATGGCTGGGCATTCGAAGTGGGCGAAGATAAAGCGAGC
GAAAGGCTCCAACGACGATGTACACAAGAATGGCACGCCCGTGGTCAGAG
ATCTCATTCAGCCTTCGATCTACCTCCTCCCCCCCTCCTACTACGATCCC
CTCCCCGGCTCGTCCCCATTCTAATATCAT
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Synonyms
Publications