EWM21079.1, cds9594 (CDS) Nannochloropsis gaditana

Overview
NameEWM21079.1
Unique Namecds9594
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:315349..315461 -
Alignment locationKK037254.1:315195..315280 -
Alignment locationKK037254.1:314924..315117 -
Alignment locationKK037254.1:314678..314704 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21079.1
Productdna-binding regulatory family
Orig transcript idgnl|cribi|Naga_101286g2.1470.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:315349..315461 -
KK037254.1supercontigKK037254.1:315195..315280 -
KK037254.1supercontigKK037254.1:314924..315117 -
KK037254.1supercontigKK037254.1:314678..314704 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR029072YebC-like
IPR002876Transcrip_reg_TACO1-like
IPR017856Integrase_Zn-bd_dom-like_N
Homology
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|585101129|gb|EWM21079.1| (dna-binding regulatory family [Nannochloropsis gaditana])

HSP 1 Score: 283.493 bits (724), Expect = 9.537e-97
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query:    1 MYTRMARPWSEISFSLRSTSSPPPTTIPSPARPHSNIITSTSVRDMMMMAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDVTDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAVQAPPPSL 139
            MYTRMARPWSEISFSLRSTSSPPPTTIPSPARPHSNIITSTSVRDMMMMAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDVTDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAVQAPPPSL
Sbjct:    1 MYTRMARPWSEISFSLRSTSSPPPTTIPSPARPHSNIITSTSVRDMMMMAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDVTDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAVQAPPPSL 139          
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|931529859|gb|KPL06678.1| (transcriptional regulator [bacterium SM23_57])

HSP 1 Score: 89.7373 bits (221), Expect = 3.226e-19
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 0
Query:   49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGD-VTDIRLAAAISKAKACNVPKDNIEAALKRGV-EGKGGANMEAV 132
            M+GHSKW+ IKR KG+ DAKR  +FTK+A E++ A+R+  GD  T+ +L  AI KAK+ N+PKDNIE A+KRG  E K G  +E V
Sbjct:    1 MSGHSKWSTIKRKKGAMDAKRGAVFTKVAKEIALAAREGGGDPYTNFKLRLAIDKAKSVNMPKDNIERAIKRGTGESKDGHTLEEV 86          
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|297170984|gb|ADI21999.1| (uncharacterized conserved protein [uncultured myxobacterium HF0200_01L06])

HSP 1 Score: 84.3445 bits (207), Expect = 1.246e-18
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 0
Query:   49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDV-TDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAVQ 133
            M+GHSKW+ IKR KG+ DAKR  +FTKL  ELS A+R   G+V ++ RL   I KAKA N+PKDNIE A+++GV   GG   EA +
Sbjct:    1 MSGHSKWSTIKRKKGAADAKRGKIFTKLIRELSTAARIGGGEVDSNPRLRLVIDKAKAANMPKDNIERAIQKGV---GGGESEAFE 83          
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|503949426|ref|WP_014183420.1| (YebC/PmpR family DNA-binding transcriptional regulator [Desulfosporosinus orientis] >gi|357211977|gb|AET66595.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfosporosinus orientis DSM 765])

HSP 1 Score: 87.4261 bits (215), Expect = 1.960e-18
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 0
Query:   49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDVTDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAVQ 133
            M+GHSKW+ IK  KG  DA++  +FTKL  EL  ASR   GDV D RL  AI  AKA NVP +NI+ A+++G  G  GAN E ++
Sbjct:    1 MSGHSKWSNIKHKKGKADAQKGKVFTKLGRELLIASRACGGDVNDFRLKIAIENAKAQNVPNENIQRAIQKGAGGAEGANYEELR 85          
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|1010956856|ref|WP_061916083.1| (YebC/PmpR family DNA-binding transcriptional regulator [Bellilinea caldifistulae] >gi|934102139|gb|KPL74989.1| transcriptional regulator [Bellilinea caldifistulae] >gi|937445082|dbj|GAP10631.1| DNA-binding regulatory protein, YebC/PmpR family [Bellilinea caldifistulae])

HSP 1 Score: 87.4261 bits (215), Expect = 2.524e-18
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 0
Query:   49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGD-VTDIRLAAAISKAKACNVPKDNIEAALKRGV-EGKGGANMEAV 132
            M+GHSKWA IKR KG+ DAKR  LFT+L  E+  A+R+  GD  T+ RL  A+ KA++ N+PK+NIE A+KRG  E K GA  E V
Sbjct:    1 MSGHSKWATIKRKKGAMDAKRGQLFTRLTREIVLAAREGGGDPATNFRLRLAVEKARSQNMPKENIERAIKRGTGESKDGAAFEEV 86          
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|1086321416|emb|SDC19109.1| (DNA-binding regulatory protein, YebC/PmpR family [Melghirimyces thermohalophilus])

HSP 1 Score: 87.0409 bits (214), Expect = 2.944e-18
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 0
Query:   48 MMAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGD-VTDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAV 132
            MMAGHSKW  I+  KG  DA R  +F+KL+ E+S A+R+  GD   + RL  AISKA+A N+P DNIE A+KRG    GG N E+V
Sbjct:    1 MMAGHSKWKNIQHRKGRQDAIRGKVFSKLSREISVAAREGGGDPDQNQRLRLAISKARAQNMPNDNIERAIKRGTGEDGGGNYESV 86          
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|1084665482|gb|OGP13499.1| (transcriptional regulator [Deltaproteobacteria bacterium GWA2_50_8] >gi|1084788580|gb|OGQ26641.1| transcriptional regulator [Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_50_15] >gi|1084823640|gb|OGQ57757.1| transcriptional regulator [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_50_16] >gi|1084835925|gb|OGQ68782.1| transcriptional regulator [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_50_11])

HSP 1 Score: 86.6557 bits (213), Expect = 4.439e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 0
Query:   49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDV-TDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANME 130
            M+GHSKWA IKR KG+NDAKR  LFTKL  E++ A+RQ  G++ ++ RL  A+ KAK  N+P+DNI  A+K+G     G N E
Sbjct:    1 MSGHSKWATIKRKKGANDAKRGALFTKLIREITVAARQGGGNIDSNFRLRTAVDKAKEGNMPQDNIVRAIKKGTGELEGVNYE 83          
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|332977888|gb|EGK14637.1| (glucose-1-phosphate adenylyltransferase [Desmospora sp. 8437])

HSP 1 Score: 87.0409 bits (214), Expect = 5.206e-18
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 0
Query:   44 RDMMMMAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGD-VTDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAV 132
            ++++ MAGHSKW  I+  KG  DA R  LF KLA E+S A+R+  GD   + RL  AISKA++ N+P DNIE A+ RG   +GG+N EAV
Sbjct:   22 KEVIGMAGHSKWKNIQHRKGRQDALRGKLFAKLAREISVAAREGGGDPDQNQRLRLAISKARSQNMPNDNIERAIHRGTGAEGGSNYEAV 111          
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|818690503|gb|KKT35543.1| (Transcriptional regulator [Parcubacteria group bacterium GW2011_GWA2_44_12])

HSP 1 Score: 86.2705 bits (212), Expect = 5.791e-18
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 0
Query:   49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDVTDIRLAAAISKAKACNVPKDNIEAALKRG---VEGKGGANMEAVQAPPP 137
            M+GHSKWA IKRAKG+ DAKRA +FTKLA  +S A+R  +    +I+L  A+ KAKA NVPKDNIE A+ RG   + G+G     + +A  P
Sbjct:    1 MSGHSKWATIKRAKGATDAKRANMFTKLAKAISLAARDGKDPEANIKLRIAVEKAKAANVPKDNIERAILRGAGELAGQGALEEISYEAYGP 92          
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|936187982|ref|WP_054522233.1| (YebC/PmpR family DNA-binding transcriptional regulator [Thermanaerothrix daxensis] >gi|934109988|gb|KPL82695.1| transcriptional regulator [Thermanaerothrix daxensis])

HSP 1 Score: 86.2705 bits (212), Expect = 6.443e-18
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 0
Query:   49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGD-VTDIRLAAAISKAKACNVPKDNIEAALKRGV-EGKGGANMEAV 132
            M+GHSKWA IKR KG+ DAKR  LFT+LA E+  A+R+  GD   ++RL  AI KA+A N+PK+NIE A+KRG  E K G  +E +
Sbjct:    1 MSGHSKWATIKRKKGAMDAKRGQLFTRLAREIVLAAREGGGDPEANVRLRLAIEKARANNMPKENIERAIKRGTGESKEGGVLEQI 86          
The following BLAST results are available for this feature:
BLAST of EWM21079.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101129|gb|EWM21079.1|9.537e-97100.00dna-binding regulatory family [Nannochloropsis gad... [more]
gi|931529859|gb|KPL06678.1|3.226e-1954.65transcriptional regulator [bacterium SM23_57][more]
gi|297170984|gb|ADI21999.1|1.246e-1854.65uncharacterized conserved protein [uncultured myxo... [more]
gi|503949426|ref|WP_014183420.1|1.960e-1851.76YebC/PmpR family DNA-binding transcriptional regul... [more]
gi|1010956856|ref|WP_061916083.1|2.524e-1854.65YebC/PmpR family DNA-binding transcriptional regul... [more]
gi|1086321416|emb|SDC19109.1|2.944e-1853.49DNA-binding regulatory protein, YebC/PmpR family [... [more]
gi|1084665482|gb|OGP13499.1|4.439e-1853.01transcriptional regulator [Deltaproteobacteria bac... [more]
gi|332977888|gb|EGK14637.1|5.206e-1851.11glucose-1-phosphate adenylyltransferase [Desmospor... [more]
gi|818690503|gb|KKT35543.1|5.791e-1852.17Transcriptional regulator [Parcubacteria group bac... [more]
gi|936187982|ref|WP_054522233.1|6.443e-1854.65YebC/PmpR family DNA-binding transcriptional regul... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9625rna9625Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications