EWM21079.1, cds9594 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|585101129|gb|EWM21079.1| (dna-binding regulatory family [Nannochloropsis gaditana]) HSP 1 Score: 283.493 bits (724), Expect = 9.537e-97 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 Query: 1 MYTRMARPWSEISFSLRSTSSPPPTTIPSPARPHSNIITSTSVRDMMMMAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDVTDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAVQAPPPSL 139 MYTRMARPWSEISFSLRSTSSPPPTTIPSPARPHSNIITSTSVRDMMMMAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDVTDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAVQAPPPSL Sbjct: 1 MYTRMARPWSEISFSLRSTSSPPPTTIPSPARPHSNIITSTSVRDMMMMAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDVTDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAVQAPPPSL 139
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|931529859|gb|KPL06678.1| (transcriptional regulator [bacterium SM23_57]) HSP 1 Score: 89.7373 bits (221), Expect = 3.226e-19 Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 0 Query: 49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGD-VTDIRLAAAISKAKACNVPKDNIEAALKRGV-EGKGGANMEAV 132 M+GHSKW+ IKR KG+ DAKR +FTK+A E++ A+R+ GD T+ +L AI KAK+ N+PKDNIE A+KRG E K G +E V Sbjct: 1 MSGHSKWSTIKRKKGAMDAKRGAVFTKVAKEIALAAREGGGDPYTNFKLRLAIDKAKSVNMPKDNIERAIKRGTGESKDGHTLEEV 86
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|297170984|gb|ADI21999.1| (uncharacterized conserved protein [uncultured myxobacterium HF0200_01L06]) HSP 1 Score: 84.3445 bits (207), Expect = 1.246e-18 Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 0 Query: 49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDV-TDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAVQ 133 M+GHSKW+ IKR KG+ DAKR +FTKL ELS A+R G+V ++ RL I KAKA N+PKDNIE A+++GV GG EA + Sbjct: 1 MSGHSKWSTIKRKKGAADAKRGKIFTKLIRELSTAARIGGGEVDSNPRLRLVIDKAKAANMPKDNIERAIQKGV---GGGESEAFE 83
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|503949426|ref|WP_014183420.1| (YebC/PmpR family DNA-binding transcriptional regulator [Desulfosporosinus orientis] >gi|357211977|gb|AET66595.1| DNA-binding regulatory protein, YebC/PmpR family [Desulfosporosinus orientis DSM 765]) HSP 1 Score: 87.4261 bits (215), Expect = 1.960e-18 Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 0 Query: 49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDVTDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAVQ 133 M+GHSKW+ IK KG DA++ +FTKL EL ASR GDV D RL AI AKA NVP +NI+ A+++G G GAN E ++ Sbjct: 1 MSGHSKWSNIKHKKGKADAQKGKVFTKLGRELLIASRACGGDVNDFRLKIAIENAKAQNVPNENIQRAIQKGAGGAEGANYEELR 85
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|1010956856|ref|WP_061916083.1| (YebC/PmpR family DNA-binding transcriptional regulator [Bellilinea caldifistulae] >gi|934102139|gb|KPL74989.1| transcriptional regulator [Bellilinea caldifistulae] >gi|937445082|dbj|GAP10631.1| DNA-binding regulatory protein, YebC/PmpR family [Bellilinea caldifistulae]) HSP 1 Score: 87.4261 bits (215), Expect = 2.524e-18 Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 0 Query: 49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGD-VTDIRLAAAISKAKACNVPKDNIEAALKRGV-EGKGGANMEAV 132 M+GHSKWA IKR KG+ DAKR LFT+L E+ A+R+ GD T+ RL A+ KA++ N+PK+NIE A+KRG E K GA E V Sbjct: 1 MSGHSKWATIKRKKGAMDAKRGQLFTRLTREIVLAAREGGGDPATNFRLRLAVEKARSQNMPKENIERAIKRGTGESKDGAAFEEV 86
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|1086321416|emb|SDC19109.1| (DNA-binding regulatory protein, YebC/PmpR family [Melghirimyces thermohalophilus]) HSP 1 Score: 87.0409 bits (214), Expect = 2.944e-18 Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 0 Query: 48 MMAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGD-VTDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAV 132 MMAGHSKW I+ KG DA R +F+KL+ E+S A+R+ GD + RL AISKA+A N+P DNIE A+KRG GG N E+V Sbjct: 1 MMAGHSKWKNIQHRKGRQDAIRGKVFSKLSREISVAAREGGGDPDQNQRLRLAISKARAQNMPNDNIERAIKRGTGEDGGGNYESV 86
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|1084665482|gb|OGP13499.1| (transcriptional regulator [Deltaproteobacteria bacterium GWA2_50_8] >gi|1084788580|gb|OGQ26641.1| transcriptional regulator [Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_50_15] >gi|1084823640|gb|OGQ57757.1| transcriptional regulator [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_50_16] >gi|1084835925|gb|OGQ68782.1| transcriptional regulator [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_50_11]) HSP 1 Score: 86.6557 bits (213), Expect = 4.439e-18 Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 0 Query: 49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDV-TDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANME 130 M+GHSKWA IKR KG+NDAKR LFTKL E++ A+RQ G++ ++ RL A+ KAK N+P+DNI A+K+G G N E Sbjct: 1 MSGHSKWATIKRKKGANDAKRGALFTKLIREITVAARQGGGNIDSNFRLRTAVDKAKEGNMPQDNIVRAIKKGTGELEGVNYE 83
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|332977888|gb|EGK14637.1| (glucose-1-phosphate adenylyltransferase [Desmospora sp. 8437]) HSP 1 Score: 87.0409 bits (214), Expect = 5.206e-18 Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 0 Query: 44 RDMMMMAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGD-VTDIRLAAAISKAKACNVPKDNIEAALKRGVEGKGGANMEAV 132 ++++ MAGHSKW I+ KG DA R LF KLA E+S A+R+ GD + RL AISKA++ N+P DNIE A+ RG +GG+N EAV Sbjct: 22 KEVIGMAGHSKWKNIQHRKGRQDALRGKLFAKLAREISVAAREGGGDPDQNQRLRLAISKARSQNMPNDNIERAIHRGTGAEGGSNYEAV 111
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|818690503|gb|KKT35543.1| (Transcriptional regulator [Parcubacteria group bacterium GW2011_GWA2_44_12]) HSP 1 Score: 86.2705 bits (212), Expect = 5.791e-18 Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 0 Query: 49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGDVTDIRLAAAISKAKACNVPKDNIEAALKRG---VEGKGGANMEAVQAPPP 137 M+GHSKWA IKRAKG+ DAKRA +FTKLA +S A+R + +I+L A+ KAKA NVPKDNIE A+ RG + G+G + +A P Sbjct: 1 MSGHSKWATIKRAKGATDAKRANMFTKLAKAISLAARDGKDPEANIKLRIAVEKAKAANVPKDNIERAILRGAGELAGQGALEEISYEAYGP 92
BLAST of EWM21079.1 vs. NCBI_GenBank
Match: gi|936187982|ref|WP_054522233.1| (YebC/PmpR family DNA-binding transcriptional regulator [Thermanaerothrix daxensis] >gi|934109988|gb|KPL82695.1| transcriptional regulator [Thermanaerothrix daxensis]) HSP 1 Score: 86.2705 bits (212), Expect = 6.443e-18 Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 0 Query: 49 MAGHSKWAKIKRAKGSNDAKRAILFTKLAVELSEASRQAQGD-VTDIRLAAAISKAKACNVPKDNIEAALKRGV-EGKGGANMEAV 132 M+GHSKWA IKR KG+ DAKR LFT+LA E+ A+R+ GD ++RL AI KA+A N+PK+NIE A+KRG E K G +E + Sbjct: 1 MSGHSKWATIKRKKGAMDAKRGQLFTRLAREIVLAAREGGGDPEANVRLRLAIEKARANNMPKENIERAIKRGTGESKEGGVLEQI 86 The following BLAST results are available for this feature:
BLAST of EWM21079.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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