rna9614, rna9614 (mRNA) Nannochloropsis gaditana

Overview
Namerna9614
Unique Namerna9614
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1338
Alignment locationKK037254.1:285746..286793 +

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF2177, membrane
Orig transcript idgnl|cribi|Naga_101039g2.7428.mrna
Orig protein idgnl|cribi|Naga_101039g2.7428
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:285746..286793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101039g2gene9332Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9614rna9614-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21091.1cds9583Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9614 ID=rna9614|Name=rna9614|organism=Nannochloropsis gaditana|type=mRNA|length=1338bp
ACGTAAAACCTGCACCACATTGTTACCTGATTCCGAGAGACGTCTCACTT
TACAAATCCGCATAACAAACACCTAGGATGACACACATACAATCAGCTTG
GTAAGGCGAGGCCTAAGACCCGTGCTTAAGCTGCGGGAGCCTAGAAGATA
CTTTTCGAGCCGGTAAAAAGCGACTCCTGCGTTGAAGAAGACATGGCCCC
CCTGGTCCTCATCGACTCGTCCGATCCACCATGGCGTAACGCGCCTACGC
GTACGATCGTAGTGCTCATGGATGTGTTGGCTCTCGGAGGGTTGATCTGT
GCACGTTTTTGGGCCAAGAGGGCTCATTCTCCTGTCTTCTCGTGCCTCGG
ACATCCTGGCAAGCTCCACCTTCTTTCCGTCTCCCTCTTCTCCTTCGCGG
CCCTCCAATGCATCTCGCACGTGTCGCTCCTTTCCTACCAGAACGGCCAA
GATTTCAAACTTGGCGCCTACGCAGTCGCAGGCATCGCTGCCGTGCTCGC
CTACACCAGCTTCAGCACTCTCCTCCTGTACTTGAGCCTCATTTCCCGCC
CGTCTCCCATAGGGGTCGTCAGCCTGGTGGCCAGCCCCGCCTTCTTCCTC
CTCGCCATTCTCTCCGTCCTTGACCCAGCCTTAGCACACAAGGACCGCGC
CTCTTTCTTCCTGGCCTGGTTCCCCTGGTGGGGAAACCTGGTGCTGCACT
TGATTGTGTCCTCGTACCCTCTCCCTCCCTCCCTCCCGCCCGTCACCTGG
GGGGGGGCAATCCCCCTCCTAGGACGCGGGGAGGCACTGAAGAGGCCAGG
GGTGATGAGGATGGAGGAAGACGTGAGGGCGTGCTTCAAGCTACCCTTGC
TTATTTACTCCTCTCTGAGCTCTCTCTGCCTGCTGGCGGGCGTGGCGGTG
AGGGAGGAGGAGGGCGGGGCGAGGAAGGCCCTGGCCCTGGGGATGGCCGT
GTGGGTGCGATCCCTGTGGCCCCTGCACGCGGGGACGATAGGCCTGCAGA
TGGCGGCACGATGGGCGGGCGAGAGGGAGGCAGGGGGGGAAGAGGGGAAG
AGGGGCGCTCGTGGAGGTGATGGAGGGGGAGGGGGAGGAGGGGGAGGAGG
AGGAGGAGGGGGAGGAGGAGGGAGAGGAGGAGGAGGAGGGAAGACGACGG
GCAGCAGAGACTTTGGCGAGGCTGCTGAATGAGGAGTCAGTGCGGGGCTT
ATTGGTTGACTTTAGGGAGGTGCGGCTGGGCAGACTTATCGCGAAGGGTG
GGGGCGGGGTGGTGCGAGAGGGGCGACTGGGGGGGGTACCGGTGGCCGCC
AAGAGTCTGTACTCGCAGTTCTTGATGGGCGAGGTGGA
back to top

protein sequence of rna9614

>rna9614-protein ID=rna9614-protein|Name=rna9614|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MYQSVQSETLEWSEVAMRRKSPGWPFYPLAALLYVLVDLPWLLINSGNVQ
NMVEDIQKQPLEFRVWAAVPVYVALAYLVSRANSSWEAFGLGVACYAVYD
WTNMSTLSSYWWGFALADSVWGGVLTCIVFIILTHPRISPVWAAQRQ
back to top

mRNA from alignment at KK037254.1:285746..286793+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9614 ID=rna9614|Name=rna9614|organism=Nannochloropsis gaditana|type=mRNA|length=1048bp|location=Sequence derived from alignment at KK037254.1:285746..286793+ (Nannochloropsis gaditana)
TCGGAATCAGGTAACAATGTGGTGCAGGTTTTACGTGTCATGCGAGAGAT
GGGGGGTGCTGTTCGTCGAGTATGTTCCAATAGCGACTCAGAGCATACCA
TGCGGGCGAGCGTCGTCTGCACCACGCAAAAGCCCCTCGTTGCTTGCGTG
GCTTGCACCTGACCTTTTTTAGACagtttttctcctctttgcaTTGATTT
TATTGCGCGCACACCCGTGGCCCCTGCGAAAGCCCTCAGGATTGTGGCAA
ACTGAAAGTGACACCGTGgtcctccttcatttcctctACGACCTAGGCAC
GGACGCGGATAAAGAGTGCCACTTCAAAGCTCATGTATCAGTCTGTCCAA
AGCGAGACATTGGAATGGAGCGAGGTGGCCATGCGACGTAAGAGCCCAGG
CTGGCCTTTCTACCCGCTCGCCGCTCTTCTCTACGTGCTCGTGGACTTGC
CCTGGCTGCTCATCAATAGCGGGAATGTGCAAAacatggtggaggacatc
CAAAAACAGCCCTTGGAGTTTCGGGTCTGGGCAGCTGTCCCTGTCTACGT
GGCTTTGGCGTACCTTGTGTCCCGCGCCAACTCCTCCTGGGAGGCCTTTG
GATTGGGGGTGGCATGCTATGCCGTCTACGACTGGACTAACATGAGCACT
CTCTCTTCGTACTGGTGGGGATTCGCTCTGGCTGATTCCGTTTGGGGTGG
TGTCTTGACGTGCATCGTTTTCATTATTTTAACTCATCCACGCATTTCAC
CGGTGTGGGCGGCGCAAAGACAGTAAAATAGAGGAGTAAGGCATTCCTGA
AGGAGGTTCCTCAGTTGGTATCAATGGATAATAATCCTACCAAAAAATAT
CCATGCAAACACTCTTTTGAGGTTTTAAGGAGCATTCCAAGGCAACAAAC
ATGATTTTGTTCGATGCCACACAAAATGCTTTGCGTTGCTACCTCCATGA
TCTCGTCTCTTGAAATGTGACACGACGACAGGTTCGAACTGCATCATTAC
ACGACTTTTAAAACCACCGCAATGACTTTTAAACACTTGCAATAGTCC
back to top

Coding sequence (CDS) from alignment at KK037254.1:285746..286793+

>rna9614 ID=rna9614|Name=rna9614|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at KK037254.1:285746..286793+ (Nannochloropsis gaditana)
ATGTATCAGTCTGTCCAAAGCGAGACATTGGAATGGAGCGAGGTGGCCAT
GCGACGTAAGAGCCCAGGCTGGCCTTTCTACCCGCTCGCCGCTCTTCTCT
ACGTGCTCGTGGACTTGCCCTGGCTGCTCATCAATAGCGGGAATGTGCAA
AacatggtggaggacatcCAAAAACAGCCCTTGGAGTTTCGGGTCTGGGC
AGCTGTCCCTGTCTACGTGGCTTTGGCGTACCTTGTGTCCCGCGCCAACT
CCTCCTGGGAGGCCTTTGGATTGGGGGTGGCATGCTATGCCGTCTACGAC
TGGACTAACATGAGCACTCTCTCTTCGTACTGGTGGGGATTCGCTCTGGC
TGATTCCGTTTGGGGTGGTGTCTTGACGTGCATCGTTTTCATTATTTTAA
CTCATCCACGCATTTCACCGGTGTGGGCGGCGCAAAGACAGTAA
back to top
Synonyms
Publications