EWM21091.1, cds9583 (CDS) Nannochloropsis gaditana

Overview
NameEWM21091.1
Unique Namecds9583
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:286078..286521 +

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Properties
Property NameValue
Protein idEWM21091.1
ProductProtein of unknown function DUF2177, membrane
Orig transcript idgnl|cribi|Naga_101039g2.7428.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:286078..286521 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR018687DUF2177_membr
Homology
BLAST of EWM21091.1 vs. NCBI_GenBank
Match: gi|585101152|gb|EWM21091.1| (Protein of unknown function DUF2177, membrane [Nannochloropsis gaditana])

HSP 1 Score: 298.516 bits (763), Expect = 2.093e-102
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query:    1 MYQSVQSETLEWSEVAMRRKSPGWPFYPLAALLYVLVDLPWLLINSGNVQNMVEDIQKQPLEFRVWAAVPVYVALAYLVSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVLTCIVFIILTHPRISPVWAAQRQ 147
            MYQSVQSETLEWSEVAMRRKSPGWPFYPLAALLYVLVDLPWLLINSGNVQNMVEDIQKQPLEFRVWAAVPVYVALAYLVSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVLTCIVFIILTHPRISPVWAAQRQ
Sbjct:    1 MYQSVQSETLEWSEVAMRRKSPGWPFYPLAALLYVLVDLPWLLINSGNVQNMVEDIQKQPLEFRVWAAVPVYVALAYLVSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVLTCIVFIILTHPRISPVWAAQRQ 147          
BLAST of EWM21091.1 vs. NCBI_GenBank
Match: gi|553191802|ref|XP_005855458.1| (membrane protein [Nannochloropsis gaditana CCMP526] >gi|422293600|gb|EKU20900.1| membrane protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 267.7 bits (683), Expect = 1.893e-90
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
Query:   17 MRRKSPGWPFYPLAALLYVLVDLPWLLINSGNVQNMVEDIQKQPLEFRVWAAVPVYVALAYLVSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVLTCIVFIILTHPRISPVWAAQRQ 147
            MRRKSPGWPFYPLAALLYVLVDLPWLLINSGNVQNMVEDIQKQPLEFRVWAAVPVYVALAYLVSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVLTCIVFIILTHPRISPVWAAQRQ
Sbjct:    1 MRRKSPGWPFYPLAALLYVLVDLPWLLINSGNVQNMVEDIQKQPLEFRVWAAVPVYVALAYLVSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVLTCIVFIILTHPRISPVWAAQRQ 131          
BLAST of EWM21091.1 vs. NCBI_GenBank
Match: gi|157953132|ref|YP_001498024.1| (hypothetical protein NY2A_B828R [Paramecium bursaria Chlorella virus NY2A] >gi|155123359|gb|ABT15227.1| hypothetical protein NY2A_B828R [Paramecium bursaria Chlorella virus NY2A])

HSP 1 Score: 64.6994 bits (156), Expect = 1.144e-10
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 0
Query:   28 PLAALLYVLVDLPWLLINSGNV-QNMVEDIQKQPLEFRVWAAVPVYVALAYL----VSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVL 125
             L+A+L VL DL W+   SG +   M+E IQ  PL+ ++  A+  YVA+  L    VS   ++++AF LG   YA+YD+T+ + +S + +  ++ D++WGG L
Sbjct:   10 KLSAILLVL-DLIWINTVSGKLFTQMIETIQGSPLKIKMAGALAAYVAIIALFYMFVSETTTNFKAFLLGFLAYAIYDFTSYALISEWKFKTSILDALWGGTL 111          
BLAST of EWM21091.1 vs. NCBI_GenBank
Match: gi|448930473|gb|AGE54038.1| (putative membrane protein (DUF2177) [Paramecium bursaria Chlorella virus IL-3A])

HSP 1 Score: 63.5438 bits (153), Expect = 3.152e-10
Identity = 37/103 (35.92%), Postives = 63/103 (61.17%), Query Frame = 0
Query:   28 PLAALLYVLVDLPWLLINSGNV-QNMVEDIQKQPLEFRVWAAVPVYVALAYL----VSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVL 125
             L+A+L VL DL W+   SG +   M+E IQ  PL+ ++  A+  YVA+  L    VS   ++++AF LG   YA+YD+T+ + +  + +  ++ D++WGG+L
Sbjct:   10 KLSAILLVL-DLIWINTVSGKLFTQMIETIQGSPLKIKMAGALAAYVAIIALFYMFVSETTTNFKAFLLGFLAYAIYDFTSYALIDKWDFKTSILDALWGGIL 111          
BLAST of EWM21091.1 vs. NCBI_GenBank
Match: gi|448931164|gb|AGE54727.1| (putative membrane protein (DUF2177) [Paramecium bursaria Chlorella virus KS1B])

HSP 1 Score: 62.7734 bits (151), Expect = 7.318e-10
Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 0
Query:   28 PLAALLYVLVDLPWLLINSGNV-QNMVEDIQKQPLEFRVWAAVPVYVALAYL----VSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVL 125
             L+A+L VL DL W+   SG +   M+E IQ  PL+ ++  A+  YVA+  L    VS   ++++AF LG   YA+YD+T+ + +  + +  ++ D++WGG L
Sbjct:   10 KLSAILLVL-DLIWIRAVSGKLFTQMIETIQGSPLKIKMAGALAAYVAIIALFYMFVSETTTNFKAFLLGFLAYAIYDFTSYALIDKWDFKTSILDALWGGTL 111          
BLAST of EWM21091.1 vs. NCBI_GenBank
Match: gi|508182178|ref|YP_008052697.1| (hypothetical protein PGCG_00386 [Phaeocystis globosa virus] >gi|357292366|gb|AET73702.1| hypothetical protein PGBG_00391 [Phaeocystis globosa virus 14T] >gi|506459023|gb|AGM15690.1| hypothetical protein PGCG_00386 [Phaeocystis globosa virus])

HSP 1 Score: 62.3882 bits (150), Expect = 8.172e-10
Identity = 35/107 (32.71%), Postives = 57/107 (53.27%), Query Frame = 0
Query:   27 YPLAALLYVLVDLPWLLINSGNVQNMVEDIQKQPLEFRVWAAVPVYV----ALAYLVSRANSSW-EAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVLTCI 128
            + L  +++++VD  +L + S N + MV+ IQ  PL  +++  +  Y+    +L Y V   N+S+ +AF LG   Y VY+ TNM+    +     L D  WGG L  I
Sbjct:    5 FLLLGIIFIIVDTAFLYLMSNNFKTMVKKIQGTPLSMKIFPTIFAYLILISSLYYFVVYKNASFLDAFLLGFFIYGVYETTNMAIFKDWNLYVGLIDLTWGGFLFLI 111          
BLAST of EWM21091.1 vs. NCBI_GenBank
Match: gi|9632155|ref|NP_048980.1| (hypothetical protein [Paramecium bursaria Chlorella virus 1] >gi|2447097|gb|AAC96955.1| hypothetical protein [Paramecium bursaria Chlorella virus 1] >gi|448925046|gb|AGE48627.1| putative membrane protein (DUF2177) [Paramecium bursaria Chlorella virus AN69C] >gi|448933914|gb|AGE57469.1| putative membrane protein (DUF2177) [Paramecium bursaria Chlorella virus NE-JV-4])

HSP 1 Score: 62.3882 bits (150), Expect = 9.251e-10
Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 0
Query:   28 PLAALLYVLVDLPWLLINSGNV-QNMVEDIQKQPLEFRVWAAVPVYVALAYL----VSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVL 125
             L+A+L VL DL W+   SG +   M+E IQ  PL+ ++  A+  YVA+  L    VS   ++++AF LG   YA+YD+T+ + +  + +  ++ D++WGG L
Sbjct:   10 KLSAILLVL-DLIWINTVSGKLFTQMIETIQGSPLKIKMAGALAAYVAIIALFYMFVSETTTNFKAFLLGFLAYAIYDFTSYALIDKWDFKTSILDALWGGTL 111          
BLAST of EWM21091.1 vs. NCBI_GenBank
Match: gi|157953934|ref|YP_001498825.1| (hypothetical protein AR158_C744R [Paramecium bursaria Chlorella virus AR158] >gi|156068582|gb|ABU44289.1| hypothetical protein AR158_C744R [Paramecium bursaria Chlorella virus AR158] >gi|448931535|gb|AGE55097.1| putative membrane protein (DUF2177) [Paramecium bursaria Chlorella virus MA-1D] >gi|448935363|gb|AGE58914.1| putative membrane protein (DUF2177) [Paramecium bursaria Chlorella virus NYs1])

HSP 1 Score: 62.3882 bits (150), Expect = 9.552e-10
Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 0
Query:   28 PLAALLYVLVDLPWLLINSGNV-QNMVEDIQKQPLEFRVWAAVPVYVALAYL----VSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVL 125
             L+A+L VL DL W+   SG +   M+E IQ  PL+ ++  A+  YVA+  L    VS   ++++AF LG   YA+YD+T+ + +  + +  ++ D++WGG L
Sbjct:   10 KLSAILLVL-DLIWINTVSGKLFTQMIETIQGTPLKIKMAGALAAYVAIIALFYMFVSETTTNFKAFLLGFLAYAIYDFTSYALIDKWDFKTSILDALWGGTL 111          
BLAST of EWM21091.1 vs. NCBI_GenBank
Match: gi|448934982|gb|AGE58534.1| (putative membrane protein (DUF2177) [Paramecium bursaria Chlorella virus NY-2B])

HSP 1 Score: 62.003 bits (149), Expect = 1.247e-9
Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 0
Query:   28 PLAALLYVLVDLPWLLINSGNV-QNMVEDIQKQPLEFRVWAAVPVYVALAYL----VSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVL 125
             L+A+L VL DL W+   SG +   M+E IQ  PL+ ++  A+  YVA+  L    VS   ++++AF LG   YA+YD+T+ + +  + +  ++ D++WGG L
Sbjct:   10 KLSAILLVL-DLIWINTVSGKLFTQMIETIQGAPLKIKMAGALAAYVAIIALFYMFVSETTTNFKAFLLGFLAYAIYDFTSYALIDKWDFKTSILDALWGGTL 111          
BLAST of EWM21091.1 vs. NCBI_GenBank
Match: gi|448930851|gb|AGE54415.1| (putative membrane protein (DUF2177) [Paramecium bursaria Chlorella virus IL-5-2s1])

HSP 1 Score: 61.2326 bits (147), Expect = 2.100e-9
Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 0
Query:   28 PLAALLYVLVDLPWLLINSGNV-QNMVEDIQKQPLEFRVWAAVPVYVALAYL----VSRANSSWEAFGLGVACYAVYDWTNMSTLSSYWWGFALADSVWGGVL 125
             L+A+L VL DL W+   SG +   M+E IQ  PL+ ++  A+  YVA+  L    VS   ++++AF LG   YA+YD+T+ + +  + +  ++ D++WGG L
Sbjct:   10 KLSAILLVL-DLIWINTVSGKLFTQMIEAIQGAPLKIKMAGALAAYVAIIALFYMFVSETTTNFKAFLLGFLAYAIYDFTSYALIDKWDFKTSILDALWGGTL 111          
The following BLAST results are available for this feature:
BLAST of EWM21091.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101152|gb|EWM21091.1|2.093e-102100.00Protein of unknown function DUF2177, membrane [Nan... [more]
gi|553191802|ref|XP_005855458.1|1.893e-90100.00membrane protein [Nannochloropsis gaditana CCMP526... [more]
gi|157953132|ref|YP_001498024.1|1.144e-1036.89hypothetical protein NY2A_B828R [Paramecium bursar... [more]
gi|448930473|gb|AGE54038.1|3.152e-1035.92putative membrane protein (DUF2177) [Paramecium bu... [more]
gi|448931164|gb|AGE54727.1|7.318e-1035.92putative membrane protein (DUF2177) [Paramecium bu... [more]
gi|508182178|ref|YP_008052697.1|8.172e-1032.71hypothetical protein PGCG_00386 [Phaeocystis globo... [more]
gi|9632155|ref|NP_048980.1|9.251e-1035.92hypothetical protein [Paramecium bursaria Chlorell... [more]
gi|157953934|ref|YP_001498825.1|9.552e-1035.92hypothetical protein AR158_C744R [Paramecium bursa... [more]
gi|448934982|gb|AGE58534.1|1.247e-935.92putative membrane protein (DUF2177) [Paramecium bu... [more]
gi|448930851|gb|AGE54415.1|2.100e-935.92putative membrane protein (DUF2177) [Paramecium bu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9614rna9614Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications