rna9611, rna9611 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9611
Unique Name	rna9611
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	258
Alignment location	KK037254.1:280296..281828 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100776g2.10775.mrna
Orig protein id	gnl\|cribi\|Naga_100776g2.10775
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:280296..281828 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100776g2	gene9329	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9611	rna9611-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21094.1	cds9580	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:280296..281828+
coding sequence from alignment at KK037254.1:280296..281828+

mRNA sequence

>rna9611 ID=rna9611|Name=rna9611|organism=Nannochloropsis gaditana|type=mRNA|length=258bp
ATGCTTTGCTTACTAATGACGAGCCCGCTCCCTAACCCTCTCCAGTCCTT
CACACTGAAGGACACACAGGGCTCTGGTGGCATCCCTCGACACCATCCTG
CCCGCGAAGCATGGCACGGCGGCTCTCCATTACCGACACCCATGTTTGGG
ACCGACTGGAAGGGTGTATGGGTAAGCGAGGGGCTTAGCATCTTCCCGGC
ACGGAGAGCACGTGCCGGGGACGCAGGAGAGTGCTTAAGAGCCTCGACTG
TGGCTTAG

protein sequence of rna9611

>rna9611-protein ID=rna9611-protein|Name=rna9611|organism=Nannochloropsis gaditana|type=polypeptide|length=477bp
MARISRCSGAGVSGRRGLRINDSPFPFSFSLLKSTLRVEEAITIEGRHES
LADFLVHHPAEEVTSYFTEIVAMLEHRGIAAGKACERRFFFPSHSPPPPR
LENYHLVLKHAEDTSMRENEKEYHLSERRRAESKREAGQRGVRRRREGSL
GSGGMREDGRGEDYRRRVYRPSGASPRSDGSVERGSEGKERRNPMREGRD
RRWREEGMESSRGEEVQVRGRRQRRDGRDSRSRSRNRAKTWQLREGGRER
GGRGGTGRGRSQRRRCGRSSSRSRSRSLSPECRSCAHSLSPPSPAPCPFP
AATPTGPPKKASWAIVVYHGGSARKDFSGPLAASSCMSCDLGTSMQMGLT
GSGSGGLPAKASLIYEDEHMRYWHDAKGRPLFVVTPLRHVHNLKELTGAE
MHRLWSGAMQILTDMGCDPKQDMRDMILNAGVDRNHAHLHLKVRVTGSGF
DRARAKWSERRNRLVDALRTFARKQSC

mRNA from alignment at KK037254.1:280296..281828+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9611 ID=rna9611|Name=rna9611|organism=Nannochloropsis gaditana|type=mRNA|length=1533bp|location=Sequence derived from alignment at KK037254.1:280296..281828+ (Nannochloropsis gaditana)
ATGGCACGAATCTCTCGCTGCTCGGGCGCGGGAGTTAGCGGCCGACGAGG
CCTCCGAATCAACGATTCGCCATTCCcattctctttctcccttttgaAAT
CCACCCTTCGAGTAGAGGAAGCGATTACCATCGAGGGTCGCCATGAGTCT
TTAGCGGACTTCCTGGTGCACCATCCCGCGGAGGAAGTTACCAGTTATTT
CACTGAGATAGTTGCCATGCTTGAACATCGCGGGATCGGTAATTGATTTT
CTTGGATTGGGTGGATTGCCGTGAGGCAAAGGCATGAATGGCCCACGGGA
GTTTGCCTGGTGCCGCAGGGGCTGAATCGGCGTGAAGCCGCTGGCAAAGC
TTGTGAACGAcgtttcttctttccctcccattctcccccccctcctcgct
taGAAAACTACCACCTCGTGCTTAAGCACGCGGAGGACACATCAATGCGG
GAGAATGAAAAAGAATACCACCTCAGTGAGAGGCGTCGGGCCGAAAGCAA
AAGAGAGGCGGGTCAGCGAGGGGTAAGAAGGAGACGCGAGGGGAGCCTAG
GGTCTGGGGGTATGCGAGAGGACGGGCGCGGGGAAGATTATCGGAGAAGG
GTCTACCGACCGAGTGGAGCGTCTCCTCGGAGCGATGGCTCGGTGGAGCG
GGGCAgcgaaggcaaggagagacGCAACCCGAtgcgggaggggcgcgacC
GAAGAtggcgagaggaggggatggagagctccaggggagaggaagtacaa
gtccgggggaggagacagcGGCGCGACGGACGGGACAGTCGGAGCAGGAG
TCGGAATCGGGCAAAGACGTGGCAGCTGAGAGAAGGCGGTCGCGAAAGGG
GGGGTCGGGGTGGGaccgggcgtgggaggagccAACGTCGTCGCTGCGGT
CGTTCCAGCTCTCGATCACGCTCCAGGTCTCTCTCCCCTGAATGCCGCTC
CTGCGCCCATTCTCTATCCCCCCCATCACCtgccccctgtcccttccccg
ccgccacccccaccgGCCCCCCGAAGAAAGCCTCCTGGGCCATTGTGGTG
TACCACGGAGGGAGCGCGCGCAAGGACTTTTCTGGGCCCTTGGCGGCGTC
TAGCTGCATGTCTTGCGATTTAGGCACGAGCATGCAGATGGGTCTGACGG
GATCGGGAAGCGGGGGCCTcccggccaaggcctctctCATCTACGAGGAC
GAACACATGCGATATTGGCACGATGCCAAGGGCCGGCCGCTCTTCGTGGT
GACGCCGCTTCGGCACGTGCACAATTTAAAGGAACTCACGGGCGCGGAAA
TGCACCGGTTGTGGAGCGGAGCCATGCAAATCCTCACGGACATGGGCTGC
GACCCGAAGCAGGACATGCGGGATATGATCCTGAATGCCGGAGTCGATAG
AAATCACGCCCACTTGCACCTCAAGGTCCGCGTGACAGGGAGTGGCTTTG
ATCGGGCGCGCGCCAAGTGGAGTGAGCGAAGAAATCGCTTGGTGGATGCC
TTGAGAACTTTCGCTCGAAAGCAGTCCTGTTGA

Coding sequence (CDS) from alignment at KK037254.1:280296..281828+

>rna9611 ID=rna9611|Name=rna9611|organism=Nannochloropsis gaditana|type=CDS|length=2868bp|location=Sequence derived from alignment at KK037254.1:280296..281828+ (Nannochloropsis gaditana)
ATGGCACGAATCTCTCGCTGCTCGGGCGCGGGAGTTAGCGGCCGACGAGG
CCTCCGAATCAACGATTCGCCATTCCcattctctttctcccttttgaAAT
CCACCCTTCGAGTAGAGGAAGCGATTACCATCGAGGGTCGCCATGAGTCT
TTAGCGGACTTCCTGGTGCACCATCCCGCGGAGGAAGTTACCAGTTATTT
CACTGAGATAGTTGCCATGCTTGAACATCGCGGGATCGCCGCTGGCAAAG
CTTGTGAACGAcgtttcttctttccctcccattctcccccccctcctcgc
ttaGAAAACTACCACCTCGTGCTTAAGCACGCGGAGGACACATCAATGCG
GGAGAATGAAAAAGAATACCACCTCAGTGAGAGGCGTCGGGCCGAAAGCA
AAAGAGAGGCGGGTCAGCGAGGGGTAAGAAGGAGACGCGAGGGGAGCCTA
GGGTCTGGGGGTATGCGAGAGGACGGGCGCGGGGAAGATTATCGGAGAAG
GGTCTACCGACCGAGTGGAGCGTCTCCTCGGAGCGATGGCTCGGTGGAGC
GGGGCAgcgaaggcaaggagagacGCAACCCGAtgcgggaggggcgcgac
CGAAGAtggcgagaggaggggatggagagctccaggggagaggaagtaca
agtccgggggaggagacagcGGCGCGACGGACGGGACAGTCGGAGCAGGA
GTCGGAATCGGGCAAAGACGTGGCAGCTGAGAGAAGGCGGTCGCGAAAGG
GGGGGTCGGGGTGGGaccgggcgtgggaggagccAACGTCGTCGCTGCGG
TCGTTCCAGCTCTCGATCACGCTCCAGGTCTCTCTCCCCTGAATGCCGCT
CCTGCGCCCATTCTCTATCCCCCCCATCACCtgccccctgtcccttcccc
gccgccacccccaccgGCCCCCCGAAGAAAGCCTCCTGGGCCATTGTGGT
GTACCACGGAGGGAGCGCGCGCAAGGACTTTTCTGGGCCCTTGGCGGCGT
CTAGCTGCATGTCTTGCGATTTAGGCACGAGCATGCAGATGGGTCTGACG
GGATCGGGAAGCGGGGGCCTcccggccaaggcctctctCATCTACGAGGA
CGAACACATGCGATATTGGCACGATGCCAAGGGCCGGCCGCTCTTCGTGG
TGACGCCGCTTCGGCACGTGCACAATTTAAAGGAACTCACGGGCGCGGAA
ATGCACCGGTTGTGGAGCGGAGCCATGCAAATCCTCACGGACATGGGCTG
CGACCCGAAGCAGGACATGCGGGATATGATCCTGAATGCCGGAGTCGATA
GAAATCACGCCCACTTGCACCTCAAGGTCCGCGTGACAGGGAGTGGCTTT
GATCGGGCGCGCGCCAAGTGGAGTGAGCGAAGAAATCGCTTGGTGGATGC
CTTGAGAACTTTCGCTCGAAAGCAGTCCTGTTGAATGGCACGAATCTCTC
GCTGCTCGGGCGCGGGAGTTAGCGGCCGACGAGGCCTCCGAATCAACGAT
TCGCCATTCCcattctctttctcccttttgaAATCCACCCTTCGAGTAGA
GGAAGCGATTACCATCGAGGGTCGCCATGAGTCTTTAGCGGACTTCCTGG
TGCACCATCCCGCGGAGGAAGTTACCAGTTATTTCACTGAGATAGTTGCC
ATGCTTGAACATCGCGGGATCGCCGCTGGCAAAGCTTGTGAACGAcgttt
cttctttccctcccattctcccccccctcctcgcttaGAAAACTACCACC
TCGTGCTTAAGCACGCGGAGGACACATCAATGCGGGAGAATGAAAAAGAA
TACCACCTCAGTGAGAGGCGTCGGGCCGAAAGCAAAAGAGAGGCGGGTCA
GCGAGGGGTAAGAAGGAGACGCGAGGGGAGCCTAGGGTCTGGGGGTATGC
GAGAGGACGGGCGCGGGGAAGATTATCGGAGAAGGGTCTACCGACCGAGT
GGAGCGTCTCCTCGGAGCGATGGCTCGGTGGAGCGGGGCAgcgaaggcaa
ggagagacGCAACCCGAtgcgggaggggcgcgacCGAAGAtggcgagagg
aggggatggagagctccaggggagaggaagtacaagtccgggggaggaga
cagcGGCGCGACGGACGGGACAGTCGGAGCAGGAGTCGGAATCGGGCAAA
GACGTGGCAGCTGAGAGAAGGCGGTCGCGAAAGGGGGGGTCGGGGTGGGa
ccgggcgtgggaggagccAACGTCGTCGCTGCGGTCGTTCCAGCTCTCGA
TCACGCTCCAGGTCTCTCTCCCCTGAATGCCGCTCCTGCGCCCATTCTCT
ATCCCCCCCATCACCtgccccctgtcccttccccgccgccacccccaccg
GCCCCCCGAAGAAAGCCTCCTGGGCCATTGTGGTGTACCACGGAGGGAGC
GCGCGCAAGGACTTTTCTGGGCCCTTGGCGGCGTCTAGCTGCATGTCTTG
CGATTTAGGCACGAGCATGCAGATGGGTCTGACGGGATCGGGAAGCGGGG
GCCTcccggccaaggcctctctCATCTACGAGGACGAACACATGCGATAT
TGGCACGATGCCAAGGGCCGGCCGCTCTTCGTGGTGACGCCGCTTCGGCA
CGTGCACAATTTAAAGGAACTCACGGGCGCGGAAATGCACCGGTTGTGGA
GCGGAGCCATGCAAATCCTCACGGACATGGGCTGCGACCCGAAGCAGGAC
ATGCGGGATATGATCCTGAATGCCGGAGTCGATAGAAATCACGCCCACTT
GCACCTCAAGGTCCGCGTGACAGGGAGTGGCTTTGATCGGGCGCGCGCCA
AGTGGAGTGAGCGAAGAAATCGCTTGGTGGATGCCTTGAGAACTTTCGCT
CGAAAGCAGTCCTGTTGA

Synonyms

Publications