EWM21094.1, cds9580 (CDS) Nannochloropsis gaditana

Overview
NameEWM21094.1
Unique Namecds9580
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:280296..280533 +
Alignment locationKK037254.1:280633..281828 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21094.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100776g2.10775.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:280296..280533 +
KK037254.1supercontigKK037254.1:280633..281828 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR011146HIT-like
Homology
BLAST of EWM21094.1 vs. NCBI_GenBank
Match: gi|585101156|gb|EWM21094.1| (hypothetical protein Naga_100776g2 [Nannochloropsis gaditana])

HSP 1 Score: 962.214 bits (2486), Expect = 0.000e+0
Identity = 477/477 (100.00%), Postives = 477/477 (100.00%), Query Frame = 0
Query:    1 MARISRCSGAGVSGRRGLRINDSPFPFSFSLLKSTLRVEEAITIEGRHESLADFLVHHPAEEVTSYFTEIVAMLEHRGIAAGKACERRFFFPSHSPPPPRLENYHLVLKHAEDTSMRENEKEYHLSERRRAESKREAGQRGVRRRREGSLGSGGMREDGRGEDYRRRVYRPSGASPRSDGSVERGSEGKERRNPMREGRDRRWREEGMESSRGEEVQVRGRRQRRDGRDSRSRSRNRAKTWQLREGGRERGGRGGTGRGRSQRRRCGRSSSRSRSRSLSPECRSCAHSLSPPSPAPCPFPAATPTGPPKKASWAIVVYHGGSARKDFSGPLAASSCMSCDLGTSMQMGLTGSGSGGLPAKASLIYEDEHMRYWHDAKGRPLFVVTPLRHVHNLKELTGAEMHRLWSGAMQILTDMGCDPKQDMRDMILNAGVDRNHAHLHLKVRVTGSGFDRARAKWSERRNRLVDALRTFARKQSC 477
            MARISRCSGAGVSGRRGLRINDSPFPFSFSLLKSTLRVEEAITIEGRHESLADFLVHHPAEEVTSYFTEIVAMLEHRGIAAGKACERRFFFPSHSPPPPRLENYHLVLKHAEDTSMRENEKEYHLSERRRAESKREAGQRGVRRRREGSLGSGGMREDGRGEDYRRRVYRPSGASPRSDGSVERGSEGKERRNPMREGRDRRWREEGMESSRGEEVQVRGRRQRRDGRDSRSRSRNRAKTWQLREGGRERGGRGGTGRGRSQRRRCGRSSSRSRSRSLSPECRSCAHSLSPPSPAPCPFPAATPTGPPKKASWAIVVYHGGSARKDFSGPLAASSCMSCDLGTSMQMGLTGSGSGGLPAKASLIYEDEHMRYWHDAKGRPLFVVTPLRHVHNLKELTGAEMHRLWSGAMQILTDMGCDPKQDMRDMILNAGVDRNHAHLHLKVRVTGSGFDRARAKWSERRNRLVDALRTFARKQSC
Sbjct:    1 MARISRCSGAGVSGRRGLRINDSPFPFSFSLLKSTLRVEEAITIEGRHESLADFLVHHPAEEVTSYFTEIVAMLEHRGIAAGKACERRFFFPSHSPPPPRLENYHLVLKHAEDTSMRENEKEYHLSERRRAESKREAGQRGVRRRREGSLGSGGMREDGRGEDYRRRVYRPSGASPRSDGSVERGSEGKERRNPMREGRDRRWREEGMESSRGEEVQVRGRRQRRDGRDSRSRSRNRAKTWQLREGGRERGGRGGTGRGRSQRRRCGRSSSRSRSRSLSPECRSCAHSLSPPSPAPCPFPAATPTGPPKKASWAIVVYHGGSARKDFSGPLAASSCMSCDLGTSMQMGLTGSGSGGLPAKASLIYEDEHMRYWHDAKGRPLFVVTPLRHVHNLKELTGAEMHRLWSGAMQILTDMGCDPKQDMRDMILNAGVDRNHAHLHLKVRVTGSGFDRARAKWSERRNRLVDALRTFARKQSC 477          
BLAST of EWM21094.1 vs. NCBI_GenBank
Match: gi|188501661|gb|ACD54779.1| (diadenosine tetraphosphate hydrolase HIT family-like protein [Adineta vaga])

HSP 1 Score: 75.8702 bits (185), Expect = 7.939e-12
Identity = 41/153 (26.80%), Postives = 76/153 (49.67%), Query Frame = 0
Query:  317 VYHGGSARKDFSGPLAASSCMSCDLGTSMQMGLTGSGSGGLPAKASLIYEDEHMRYWHDAKGRPLFVVTPLRHVHNLKELTGAEMHRLWSGAMQILTDMGCDPKQDMRDMILNAGVDRNHAHLHLKVRVTGSGFDR-ARAKWSERRNRLVDAL 468
            +Y+    R   SGP+    C+SCD+   +             ++ S I ++     W DA+ R   +VTP RH+  L ++T  EM   W     IL ++G     + + MI+N G+ RNH HLH+K+ +  + +++  + ++ ++  ++ D L
Sbjct:   97 IYNDKEIR---SGPVNGGVCISCDMDNKL-------------SQLSSIQQNSTTSIWLDAQLRKKLIVTPKRHIERLSDMTDEEMILFWKDTQLILNEVGV----NWQSMIINHGLYRNHFHLHMKINIEQNQWNQFIQNRYKDKIEQMNDLL 229          
BLAST of EWM21094.1 vs. NCBI_GenBank
Match: gi|294461665|gb|ADE76392.1| (unknown [Picea sitchensis])

HSP 1 Score: 74.3294 bits (181), Expect = 3.034e-11
Identity = 44/100 (44.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:  375 DAKGRPLFVVTPLRHVHNLKELTGAEMHRLWSGAMQILTDMGCDPKQDMRDMILNAGVDRNHAHLHLKVRVTGSGFDRARAKWSERRNRLVDALRTFARK 474
            DAK RP F+VTPLRHV  + EL   EM+ LW   +Q L + G       + MILN G  RN AHLHLK+ V       AR  WSE +  L   L   A +
Sbjct:  165 DAKARPGFIVTPLRHVDRMSELDDEEMYYLWWVGVQALRNEGFSM---FKSMILNHGCYRNVAHLHLKIWVDPQLHSAAREMWSEAKIMLWGRLEYLANR 261          
The following BLAST results are available for this feature:
BLAST of EWM21094.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585101156|gb|EWM21094.1|0.000e+0100.00hypothetical protein Naga_100776g2 [Nannochloropsi... [more]
gi|188501661|gb|ACD54779.1|7.939e-1226.80diadenosine tetraphosphate hydrolase HIT family-li... [more]
gi|294461665|gb|ADE76392.1|3.034e-1144.00unknown [Picea sitchensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9611rna9611Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications