rna9604, rna9604 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9604
Unique Name	rna9604
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1626
Alignment location	KK037254.1:267933..270045 -

Link to JBrowse

Properties


Property Name	Value
Product	violaxanthin de-epoxidase
Orig transcript id	gnl\|cribi\|Naga_100041g46.3703.mrna
Orig protein id	gnl\|cribi\|Naga_100041g46.3703
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:267933..270045 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g46	gene9322	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21133.1	cds9573	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9604	rna9604-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:267933..270045-
coding sequence from alignment at KK037254.1:267933..270045-

mRNA sequence

>rna9604 ID=rna9604|Name=rna9604|organism=Nannochloropsis gaditana|type=mRNA|length=1626bp
ATGCAGCCCCCGAAGAGGGCCCGTGTGGAAAAATCATCCTCGGCAGAATG
TCAAGGGATGATCTGTAGTGGGAGAAGGAACGTTTTCACCTTGAACAAAA
GTAAACATAGAGGATGTGAATTTGCTTTTTCCGATATTTTGTTGTTATTG
TTCCGCCGTCTTCGTACTGTGGACACCCACGGGTGTTCCATTCCCAAAAT
AACCTCGCAACCTTTGTCGTCGAATCGCTGGTTGCCAAAAGCTCCAAGAC
AGGGCGACTCTGGAACGATGTCTATCCAAGATGGACAGGGAAAGGGCACC
CTGGATGTGGCGCATTACTTCGACGATGAAGGCATACCGGCCAAGATTCC
GTACGGTGGCACGTCGTCCAGAAATCATCTGGCCTTCAAGTACTACGACG
AGGATCAAATTGTGCGAGGAAAAAGCATGCGGGAGTGGCTCCGCTTCAGT
GTTTGTTACTGGCATACCATGCGTGGTGTGGGCCTGGATCCCTTCGGGGG
GGGGACGATTTCCCGGCCGTGGGAGGACGGAACAGACGGCCTAGAGAACG
CCAAACGTCGTCTTCGCGTCGCTTTTGAATTTATGAAACGCTTGGGCGTG
CCTTTCTGGACCTTTCACGACCGCGACATTGCCCCCGAGGGTGCTACTCT
TGCCGAGTCAGGAAAGCTCCTGGACGCCGTCGTGGACCTCGCTGTGGAGC
TGCAGTCCAGCACGGGGATCTCCTGTCTCTGGGGCACTGCCAACCTCTTC
AGCACGCGCCGCTACATGAACGGCGCCTCCACGAACCCGGACGCCCATGT
TTTTGCCTACGCGGCCGCTCAAGTGAAGAAAGTGATGGAAGTGACGCACC
GGCTCGGAGGCCAGAACCTGGTCTTTTGGGGGGGGCGCGAGGGCTACCAG
AGCTTGCTGAACACGGACGTGAGGCAGGAGCTCGATCACATGGCGGCTTT
CTTCAGGATGGTGGTGGCCTATAAGGCAAAGATCGGGGCCACGTATCAGC
TCCTCCTCGAGCCCAAACCCAAGGAACCGACCGCTCACCAGTACGACTAC
GACGCGCAGACTGTGATATGCTTCCTCAAGACCTACGGCCTGGACAAGGA
CTTCAAGATCAATATCGAGCCCAATCACACGACGCTGGCGGGGCACTGCG
CGGAGCACGACGTGGTCATGGCGTCCAAGTTCGGGATGTTGGGCAGCATC
GACGCCAACACGGGAGTGGCGCACCTGGGCTGGGACACGGACTGCTTCAT
GGCGGACCCCCAGCAGACCACCCTCATCATGAAGACCGTGCTCGAGCAGG
GAGGGATCGCCCCGGGGGGGCTTAACTTCGACGCCAAAGTGCGGCGGGAG
TCGACGGCCCTGGAGGATATGTTCATCGCCCACATCCAGGGGATGGACGC
CTTCGCCAAGGGCTTGGTGGGGGCAGCGGCGCTTTTGGAGGAGGGACTTC
TGCCCAGGATGGTGGCGGCCCGCTACGCGAGCTATGCGGAGGGCTTCGGG
AAGAGGCTGGCGGAGGGGCAGGCGAGCTTGGAGGAGTGCGAGGCCTTCGT
GGCCGAGCACGGGGAGCCGAGGCTGGTGTCAGGGAGCCAGGAGAAATTCC
AGAGCATCTTCAACACGTATGCCTGA

protein sequence of rna9604

>rna9604-protein ID=rna9604-protein|Name=rna9604|organism=Nannochloropsis gaditana|type=polypeptide|length=537bp
MGWTRRRIDHSCYSVPMCLVLAFVGVVVLLAAPARAFLPAPLSVSYSSLA
SAPCSPSAVTGRSRRPHMRAGPSEESGARRRPEERGLGPAPLEWWADPQA
TRRLLDPAAKERPVSGNQARSPGFWFKDVLSLQALKRRAFSLAVPVLLAV
NWGSLFSGGMLHPPVAAAVDSIKVGTCLLKECQLELARCILDPKCLANVI
CLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGTY
PVPPDSALVSSFDMNTFKGKWYISAGLNPLFDCFDCQVHFFTVQGDRLYG
KLNWRITEPDGEFFTRDTVQRFVQDPRAPGKLYNHDNEYLHYQDDWYILD
YEPNVFIAVYYRGQNDAWTGYGGGVVYTKQSSVPPEYKKRIAAAFAKANV
DYARFKDVDNSCSDLKENPTALRAEFARRLFLTEEQQLQEALTTARVTAG
NAIMMEEKEAQAAVKELERVISEFEGRVGKEVGREVENLEKELVKEVQQV
ERVIDTGLWRANNKPNLDSLAQRLEERPLADPRPAPK

mRNA from alignment at KK037254.1:267933..270045-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9604 ID=rna9604|Name=rna9604|organism=Nannochloropsis gaditana|type=mRNA|length=2113bp|location=Sequence derived from alignment at KK037254.1:267933..270045- (Nannochloropsis gaditana)
GATGCAAACTGGTGTTCGACGGCAAGTAAAATTGAGTAGCGTGGCTGTCC
TGGCGAGCAGCGATGACCAAGCCGGCGTGGTGGCTGGATCTCTCTTGTGC
TGCCACCCTTTTTACGTGTATACGGTAACACATTGCAAGATAACCGGTTC
ATAACGTCAAAAATATATTGCACAAGAAAATGAAATTTAACATGAGAGTT
CTGACGGTCTAATCTTCTCAATTTTCGTCTTGCCTGGGCGGTGCATGGCA
CGCGTTATACCCACCAAAAGTGGTTCAAGTAACCTCATGTACCCTGGACG
CGTCTTTTTCAAACCCTTACAGCTTCAGCAAGGCCATGGGTTGGACACGG
AGAAGAATAGATCACTCTTGTTATTCTGTTCCTATGTGCTTGGTCCTCGC
CTTCGTGGGAGTTGTCGTCCTGCTGGCAGCCCCGGCCCGAGCTTTCCTCC
CTGCGCCCCTGTCAGTGTCCTACTCCTCCCTAGCCTCAGCCCCCTGCTCG
CCGAGTGCCGTCACTGGCCGTTCCAGGAGACCTCACATGAGAGCCGGACC
CAGTGAGGAATCAGGTGCAAGAAGACGGCCCGAGGAACGAGGTCTTGGGC
CGGCGCCCTTGGAGTGGTGGGCCGATCCGCAGGCGACCCGGCGTCTCCTC
GACCCCGCGGCGAAGGAGAGGCCGGTCTCCGGGAATCAGGCGAGGTCGCC
GGGTTTCTGGTTCAAAGATGTCCTCTCCTTGCAAGCCCTGAAGCGAAGGG
CGTTCTCTTTGGCCGTACCGGTGCTTTTGGCCGTGAACTGGGGCAGTCTC
TTTTCGGGGGGAATGCTTCACCCGCCCGTGGCGGCCGCGGTGGACAGTAT
CAAGGTGGGGACGTGTCTGCTGAAGGAGTGCCAGCTCGAGCTCGCCCGGT
GCATTCTTGACCCCAAGTGCCTGGCGAACGTGATCTGCCTGAACACGTGC
AACAACAAGGCGGACGAGGTCGGGTGCCAGATCGGTTGCGGGGACCTGTT
CGAGAACGAGGTGGTGGGGCAGTTCAACGCCTGCGCGCTCAGCAAGAAGC
AGTGCGTGCCGCGGAAGGAGGACGACGGGACCTACCCGGTGCCCCCCGAC
TCGGCGCTGGTCTCGTCCTTCGACATGAACACCTTCAAGGGCAAGTGGTA
CATCAGCGCGGGCCTGAATCCGCTCTTCGACTGCTTCGACTGCCAGGTCC
ACTTCTTCACCGTGCAGGGCGACCGGCTCTACGGAAAGCTGAACTGGCGC
ATCACGGAACCGGACGGGGAGTTCTTCACGCGGGACACGGTGCAGCGCTT
CGTGCAGGACCCGCGCGCCCCGGGCAAGCTCTACAACCACGACAACGAGT
ACCTCCACTACCAGGACGACTGGTACATCCTCGACTACGAACCCAACGTC
TTCATCGCCGTCTACTACCGGGGCCAGAACGACGCCTGGACCGGCTACGG
CGGGGGCGTCGTCTACACGAAGCAGTCGAGCGTCCCCCCCGAGTACAAGA
AGCGCATCGCCGCCGCCTTCGCGAAAGCCAACGTGGACTATGCCCGCTTC
AAGGACGTGGACAACTCCTGCAGCGACTTGAAGGAGAACCCGACGGCGCT
GCGGGCCGAGTTCGCGCGGAGACTCTTCCTGACAGAGGAGCAGCAGCTGC
AGGAGGCGCTGACCACCGCGCGGGTGACGGCGGGAAACGCGATCATGATG
GAGGAGAAGGAGGCGCAAGCGGCGGTCAAGGAGCTGGAGCGTGTCATCTC
GGAGTTTGAGGGGCGGGTGGGGAAGGAGGTGGGCCGCGAGGTGGAGAATT
TGGAGAAGGAGCTGGTCAAAGAGGTGCAGCAGGTGGAGCGCGTGATCGAT
ACCGGCCTGTGGCGGGCCAACAACAAGCCGAATCTGGACTCTCTCGCGCA
GCGCCTGGAGGAGAGGCCGCTGGCGGATCCACGGCCCGCGCCTAAGTGAG
GAGGGGTCGGAGGGAGGCCTGGGGGCAGAGGCAGGGCTGGAGAGAGGGGA
GGGCGTGTGCGAGAAGGAAGGGCGCGGAGGCTCGGCTCAGCAAATTAGAA
AGACAGCATCTCGAAATTAAAGAGGAAGTATCAGTGTGTCAAAACAAAGT
GTTTTATTTTTTT

Coding sequence (CDS) from alignment at KK037254.1:267933..270045-

>rna9604 ID=rna9604|Name=rna9604|organism=Nannochloropsis gaditana|type=CDS|length=1614bp|location=Sequence derived from alignment at KK037254.1:267933..270045- (Nannochloropsis gaditana)
ATGGGTTGGACACGGAGAAGAATAGATCACTCTTGTTATTCTGTTCCTAT
GTGCTTGGTCCTCGCCTTCGTGGGAGTTGTCGTCCTGCTGGCAGCCCCGG
CCCGAGCTTTCCTCCCTGCGCCCCTGTCAGTGTCCTACTCCTCCCTAGCC
TCAGCCCCCTGCTCGCCGAGTGCCGTCACTGGCCGTTCCAGGAGACCTCA
CATGAGAGCCGGACCCAGTGAGGAATCAGGTGCAAGAAGACGGCCCGAGG
AACGAGGTCTTGGGCCGGCGCCCTTGGAGTGGTGGGCCGATCCGCAGGCG
ACCCGGCGTCTCCTCGACCCCGCGGCGAAGGAGAGGCCGGTCTCCGGGAA
TCAGGCGAGGTCGCCGGGTTTCTGGTTCAAAGATGTCCTCTCCTTGCAAG
CCCTGAAGCGAAGGGCGTTCTCTTTGGCCGTACCGGTGCTTTTGGCCGTG
AACTGGGGCAGTCTCTTTTCGGGGGGAATGCTTCACCCGCCCGTGGCGGC
CGCGGTGGACAGTATCAAGGTGGGGACGTGTCTGCTGAAGGAGTGCCAGC
TCGAGCTCGCCCGGTGCATTCTTGACCCCAAGTGCCTGGCGAACGTGATC
TGCCTGAACACGTGCAACAACAAGGCGGACGAGGTCGGGTGCCAGATCGG
TTGCGGGGACCTGTTCGAGAACGAGGTGGTGGGGCAGTTCAACGCCTGCG
CGCTCAGCAAGAAGCAGTGCGTGCCGCGGAAGGAGGACGACGGGACCTAC
CCGGTGCCCCCCGACTCGGCGCTGGTCTCGTCCTTCGACATGAACACCTT
CAAGGGCAAGTGGTACATCAGCGCGGGCCTGAATCCGCTCTTCGACTGCT
TCGACTGCCAGGTCCACTTCTTCACCGTGCAGGGCGACCGGCTCTACGGA
AAGCTGAACTGGCGCATCACGGAACCGGACGGGGAGTTCTTCACGCGGGA
CACGGTGCAGCGCTTCGTGCAGGACCCGCGCGCCCCGGGCAAGCTCTACA
ACCACGACAACGAGTACCTCCACTACCAGGACGACTGGTACATCCTCGAC
TACGAACCCAACGTCTTCATCGCCGTCTACTACCGGGGCCAGAACGACGC
CTGGACCGGCTACGGCGGGGGCGTCGTCTACACGAAGCAGTCGAGCGTCC
CCCCCGAGTACAAGAAGCGCATCGCCGCCGCCTTCGCGAAAGCCAACGTG
GACTATGCCCGCTTCAAGGACGTGGACAACTCCTGCAGCGACTTGAAGGA
GAACCCGACGGCGCTGCGGGCCGAGTTCGCGCGGAGACTCTTCCTGACAG
AGGAGCAGCAGCTGCAGGAGGCGCTGACCACCGCGCGGGTGACGGCGGGA
AACGCGATCATGATGGAGGAGAAGGAGGCGCAAGCGGCGGTCAAGGAGCT
GGAGCGTGTCATCTCGGAGTTTGAGGGGCGGGTGGGGAAGGAGGTGGGCC
GCGAGGTGGAGAATTTGGAGAAGGAGCTGGTCAAAGAGGTGCAGCAGGTG
GAGCGCGTGATCGATACCGGCCTGTGGCGGGCCAACAACAAGCCGAATCT
GGACTCTCTCGCGCAGCGCCTGGAGGAGAGGCCGCTGGCGGATCCACGGC
CCGCGCCTAAGTGA

Synonyms

Publications