rna9601, rna9601 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9601
Unique Name	rna9601
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2823
Alignment location	KK037254.1:260059..261572 +

Link to JBrowse

Properties


Property Name	Value
Product	conserved unknown protein
Orig transcript id	gnl\|cribi\|Naga_100041g42.3669.mrna
Orig protein id	gnl\|cribi\|Naga_100041g42.3669
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:260059..261572 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g42	gene9319	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9601	rna9601-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21099.1	cds9570	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:260059..261572+
coding sequence from alignment at KK037254.1:260059..261572+

mRNA sequence

>rna9601 ID=rna9601|Name=rna9601|organism=Nannochloropsis gaditana|type=mRNA|length=2823bp
TGCAATGCGATTAAGCACCTAGGCGCGTCATGGGCTTTGTCCGTCAATAA
AGCCAGTGACGGCTCCCGAGATGCAGCAGATCCGGCGTCTTCGTCCATGC
CTGGCCCATAACCTTTTTTTCGTGCATGCTCAGGCACCATTATCGTCGAT
TTGTATATCAAACATTTAAATCTATAGTGCTGTTACAACATTTTGACATC
CTATTTCTTCCAAACGCAATGGCAAATTGTCCTTCGGAGGTAGTATCATA
TTACGACGTTGTGGAATATTTCAGAAAAATTTCTTGGGGGGCCTTCAAAA
CTGGCGGTCAATAGCTATGGCTACTGTACGGGAAATGTTAACCCGTTTTC
GCTTCGCAGAGGCTACATCCCGTGAGTGCCGCGATGAAGAACGCCGCAAG
GGGGCGCTCAAGCAGATGTGGTACATTGAGGCGTCGAGACGTACCAGGCT
GACAGGAGATGATGATGTTACATATAGCCCGTTGCACGTCGCCTCGCGGG
CGATCATATCGGCATTAGATACGTCCATGGCTGGGCTACGAAGGCGCTTG
CACGGCCACACAAATAATTCAAGTTCGACGAGCGAACCCCACACTCTGCA
CTGCGCTTGCGCACCAGAAACAAAGCCAACAACGAAAGAAAATGGCGCAG
GCAAAACTCTCTCCTTTTATCCTTCCTACCAGTCTGCAAATGAAAGCACG
ACAAGCATCAGCTCTGACATTAATTACAGCGATTGTGGGAGCGGTGCTTT
GCGCCAGACCGGTGCTGCCAAGTACTCCTTGGCCGATGCCAAGAAATTGC
TTGGAAGCTTCCGTCGTAACAGGTGAGCGATTCTTACAAGCGCGTGCTCC
GCCTGAGAGAGACGATGATGCTCTTTCTTGTCATCAAGCACCCGCAGTAA
ATGTACATTCTTTCGACCTCGTGCTGCACTACGCCCCTCAGGCGCTCCCG
GCGACGAAAATTTCCTTTCTAGAGCCCCTTTTCCTATTTTCTTTTCAACT
TAAACGGGCTCTTTCAATCCTGCATCAACCTTCTCCTTCGGCTACCGGTA
TCGCAGCGGCTATCCCATTACATCCCTGTCCCGACAGCCGTGAGTGCTGA
AGGCCGCAAGCGGACAACATGGCTCTCCTCCTGGCTCAGTAGAGTCACTT
GCATGCGCCTCTTCCTCAATCTACCAAGCGAAAGCAAGGGCCATCTACAC
GCGGCCCCCCTGCTTCTTTCCTCACTGGGTCACGTAGGCCTCATACAGAT
CGTCATTCACCACGCGCTCCTCCAGCCGCCCCAGAAACGGAGCAAGGTGT
ACAGCCAAGACATGTTTGCACTATGTGAAGGTAAAAAGTGAATCCCATGA
GCCTGGTCCAAAGAACGCGTGTCTGGGTATTTGAAATGGAAAGGCCCCAG
GCGACATGCGATACGTGCAGATGGTGGAGAAACCTAAAGGAGAAACAATC
GAAAGAAGCGCAGTGTATTATTTGACATACCCGTGGCCTAAGGGATCTCT
GCTGCATTATGTGAAAGCTTTGGCAGGAACAGTCGCGCCCACTGAGCACC
GTATATTCGGCTCGGTCTCGCCTGTCCATTGACGACTGAAATTGAGAGGC
AGAACAATGATGATTACCTCCTCCTCGCAGGCTCACTCACCCTTTCACCA
AGTGGAGGCATCGTCGATATTGTCGCGTGATGATACGACGTACTGGCGCC
CGGTCCAACGCCTGTTTGACCAGCGGTGAGAAAGGAGTATACAAAATGTC
CCAACAATCTCCTCACCTCAACAGCCCCTTCCAGGAAGCCCGGTTCGTGA
TATAGCAGCTCTGACGCAAGTTTCAGCACAGCAGACTGTGCTATCTCGTT
CGAGCCCGTTGAGTGCTTCTCGTCGACCAGTTGAGGATCCTGTTGACCTG
TACAATTGCCACGCTCGCCCGAAGGAAATGGCGATACTGAACAAGAGGAA
GGGCACTCTTGCAGTTCTAAAACCCGAGACAGGAAGAGAATGGGGTCCAT
TCACCTGTGTAAGTAGCTAGAAGAAATATGACGGTGTTTTCCGTGATGTG
AAGGGGGAGAATAAATTCCTGATGTCAAAAAAGCAAAAACAATAATGTAA
TGCAGCCTCTAGAGGTGTGGAGCGATCGTCGACGACGACGAGGAGGGAGG
TTCATTTGACGCTGAGGAACAAGAGCAATGTCTTCACTATTACTTCTTCG
AAACGGACGCCATTGACAGCACAGTGAGCACACAAGGATGGCGAAGCGCT
CCCGATGCCCTCCAAACGCCACACGAGGCGTTGATGGCGCTTACTCCCTT
GTCAGCAATGCCATGGCCCGCGTCTCGGGGCTGGCGAGGCCTTTGGACGA
CAGGCTTGCGCGCCTGGCCGCCCTCGAGGTCCGTGCACTCTCAAAAAAGC
TGGCCTGGATGGGGACTTCTCATGCATATTCGTACCTTCAAGTAGGCAGC
AGCGGGCGGCAGAGGACAGCTTTCCACAGGGGAATCAGCGTTCGAGAGTA
AGGCCGAGCATAGGAAGCCCGGCATCAACAAGGGCTTCCTCGTTAACACG
ATTAGAAGGTAAAATTGATTTTCTCAGAATATATGGATGGGGGAAGTATT
TTTCGCCTCATCGTTTGTGCGGGAGGGAGGTCACGTAACATTTCACGCGG
AACGTGGCACAATGAAAATGAATGAGATAAAATGAATGAAAAGGACGTTT
CTCGCAGCCCTGCTGTCCTGCTATGCATCCTTAGGGAGTCGGCATAGGGA
GCCACACCAGGAAGTCGGAGAGATATTTTGAGCAGGCAGGATCCTCCACG
CGTGATCCGATAACGACCTCTCT

protein sequence of rna9601

>rna9601-protein ID=rna9601-protein|Name=rna9601|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MDPILFLSRVLELQECPSSCSVSPFPSGERGNCTGQQDPQLVDEKHSTGS
NEIAQSAVLKLASELLYHEPGFLEGAVEALDRAPVRRIITRQYRRCLHLV
KGRDRAEYTVLSGRDCSCQSFHIMQQRSLRPRCKHVLAVHLAPFLGRLEE
RVVNDDLYEAYVTQ

mRNA from alignment at KK037254.1:260059..261572+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9601 ID=rna9601|Name=rna9601|organism=Nannochloropsis gaditana|type=mRNA|length=1514bp|location=Sequence derived from alignment at KK037254.1:260059..261572+ (Nannochloropsis gaditana)
CATCACGGAAAACACCGTCATATTTCTTCTAGCTACTTACACAGGTGAAT
GGACCCCATTCTCTTCCTGTCTCGGGTTTTAGAACTGCAAGagtgccctt
cctcttgttcAGTATCGCCATTTCCTTCGGGCGAGCGTGGCAATTGTACA
GGTCAACAGGATCCTCAACTGGTCGACGAGAAGCACTCAACGGGCTCGAA
CGAGATAGCACAGTCTGCTGTGCTGAAACTTGCGTCAGAGCTGCTATATC
ACGAACCGGGCTTCCTGGAAGGGGCTGTTGAGGTGAGGAGATTGTTGGGA
CATTTTGTATACTCCTTTCTCACCGCTGGTCAAACAGGCGTTGGACCGGG
CGCCAGTACGTCGTATCATCACGCGACAATATCGACGATGCCTCCACTTG
GTGAAAGGGTGAGTGAgcctgcgaggaggaggtaatcATCATTGTTCTGC
CTCTCAATTTCAGTCGTCAATGGACAGGCGAGACCGAGCCGAATATACGG
TGCTCAGTGGGCGCGACTGTTCCTGCCAAAGCTTTCACATAATGCAGCAG
AGATCCCTTAGGCCACGGGTATGTCAAATAATACACTGCGCTTCTTTCGA
TTGTTTCTCCTTTAGGTTTCTCCACCATCTGCACGTATCGCATGTCGCCT
GGGGCCTTTCCATTTCAAATACCCAGACACGCGTTCTTTGGACCAGGCTC
ATGGGATTCACTTTTTACCTTCACATAGTGCAAACATGTCTTGGCTGTAC
ACCTTGCTCCGTTTCTGGGGCGGCTGGAGGAGCGCGTGGTGAATGACGAT
CTGTATGAGGCCTACGTGACCCAGTGAGGAAAGAAGCAGGGGGGCCGCGT
GTAGATGGCCCTTGCTTTCGCTTGGTAGattgaggaagaggcgcaTGCAA
GTGACTCTACTGAgccaggaggagagccaTGTTGTCCGCTTGCGGCCTTC
AGCACTCACGGCTGTCGGGACAGGGATGTAATGGGATAGCCGCTGCGATA
CCGGTAGCCGAAGGAGAAGGTTGATGCAGGATTGAAAGAGCCCGTTTAAG
TTGAAAAGAAAATAGGAAAAGGGGCTCTAGAAAGGAAATTTTCGTCGCCG
GGAGCGCCTGAGGGGCGTAGTGCAGCACGAGGTCGAAAGAATGTACATTT
ACTGCGGGTGCTTGATGACAAGAAAGAGCATCATCGTCTCTCTCAGGCGG
AGCACGCGCTTGTAAGAATCGCTCACCTGTTACGACGGAAGCTTCCAAGC
AATTTCTTGGCATCGGCCAAGGAGTACTTGGCAGCACCGGTCTGGCGCAA
AGCACCGCTCCCACAATCGCTGTAATTAATGTCAGAGCTGATGCTTGTCG
TGCTTTCATTTGCAGACTGGTAGGAAGGATAAAAGGAGAGAGTTTTGCCT
GCGCCATTTTCTTTCGTTGTTGGCTTTGTTTCTGGTGCGCAAGCGCAGTG
CAGAGTGTGGGGTTCGCTCGTCGAACTTGAATTATTTGTGTGGCCGTGCA
AGCGCCTTCGTAGC

Coding sequence (CDS) from alignment at KK037254.1:260059..261572+

>rna9601 ID=rna9601|Name=rna9601|organism=Nannochloropsis gaditana|type=CDS|length=1980bp|location=Sequence derived from alignment at KK037254.1:260059..261572+ (Nannochloropsis gaditana)
ATGGACCCCATTCTCTTCCTGTCTCGGGTTTTAGAACTGCAAGagtgccc
ttcctcttgttcAGTATCGCCATTTCCTTCGGGCGAGCGTGGCAATTGTA
CAGGTCAACAGGATCCTCAACTGGTCGACGAGAAGCACTCAACGGGCTCG
AACGAGATAGCACAGTCTGCTGTGCTGAAACTTGCGTCAGAGCTGCTATA
TCACGAACCGGGCTTCCTGGAAGGGGCTGTTGAGGCGTTGGACCGGGCGC
CAGTACGTCGTATCATCACGCGACAATATCGACGATGCCTCCACTTGGTG
AAAGGGCGAGACCGAGCCGAATATACGGTGCTCAGTGGGCGCGACTGTTC
CTGCCAAAGCTTTCACATAATGCAGCAGAGATCCCTTAGGCCACGGTGCA
AACATGTCTTGGCTGTACACCTTGCTCCGTTTCTGGGGCGGCTGGAGGAG
CGCGTGGTGAATGACGATCTGTATGAGGCCTACGTGACCCAGTGAATGGA
CCCCATTCTCTTCCTGTCTCGGGTTTTAGAACTGCAAGagtgcccttcct
cttgttcAGTATCGCCATTTCCTTCGGGCGAGCGTGGCAATTGTACAGGT
CAACAGGATCCTCAACTGGTCGACGAGAAGCACTCAACGGGCTCGAACGA
GATAGCACAGTCTGCTGTGCTGAAACTTGCGTCAGAGCTGCTATATCACG
AACCGGGCTTCCTGGAAGGGGCTGTTGAGGCGTTGGACCGGGCGCCAGTA
CGTCGTATCATCACGCGACAATATCGACGATGCCTCCACTTGGTGAAAGG
GCGAGACCGAGCCGAATATACGGTGCTCAGTGGGCGCGACTGTTCCTGCC
AAAGCTTTCACATAATGCAGCAGAGATCCCTTAGGCCACGGTGCAAACAT
GTCTTGGCTGTACACCTTGCTCCGTTTCTGGGGCGGCTGGAGGAGCGCGT
GGTGAATGACGATCTGTATGAGGCCTACGTGACCCAGTGAATGGACCCCA
TTCTCTTCCTGTCTCGGGTTTTAGAACTGCAAGagtgcccttcctcttgt
tcAGTATCGCCATTTCCTTCGGGCGAGCGTGGCAATTGTACAGGTCAACA
GGATCCTCAACTGGTCGACGAGAAGCACTCAACGGGCTCGAACGAGATAG
CACAGTCTGCTGTGCTGAAACTTGCGTCAGAGCTGCTATATCACGAACCG
GGCTTCCTGGAAGGGGCTGTTGAGGCGTTGGACCGGGCGCCAGTACGTCG
TATCATCACGCGACAATATCGACGATGCCTCCACTTGGTGAAAGGGCGAG
ACCGAGCCGAATATACGGTGCTCAGTGGGCGCGACTGTTCCTGCCAAAGC
TTTCACATAATGCAGCAGAGATCCCTTAGGCCACGGTGCAAACATGTCTT
GGCTGTACACCTTGCTCCGTTTCTGGGGCGGCTGGAGGAGCGCGTGGTGA
ATGACGATCTGTATGAGGCCTACGTGACCCAGTGAATGGACCCCATTCTC
TTCCTGTCTCGGGTTTTAGAACTGCAAGagtgcccttcctcttgttcAGT
ATCGCCATTTCCTTCGGGCGAGCGTGGCAATTGTACAGGTCAACAGGATC
CTCAACTGGTCGACGAGAAGCACTCAACGGGCTCGAACGAGATAGCACAG
TCTGCTGTGCTGAAACTTGCGTCAGAGCTGCTATATCACGAACCGGGCTT
CCTGGAAGGGGCTGTTGAGGCGTTGGACCGGGCGCCAGTACGTCGTATCA
TCACGCGACAATATCGACGATGCCTCCACTTGGTGAAAGGGCGAGACCGA
GCCGAATATACGGTGCTCAGTGGGCGCGACTGTTCCTGCCAAAGCTTTCA
CATAATGCAGCAGAGATCCCTTAGGCCACGGTGCAAACATGTCTTGGCTG
TACACCTTGCTCCGTTTCTGGGGCGGCTGGAGGAGCGCGTGGTGAATGAC
GATCTGTATGAGGCCTACGTGACCCAGTGA

Synonyms

Publications