EWM21099.1, cds9570 (CDS) Nannochloropsis gaditana

Overview
NameEWM21099.1
Unique Namecds9570
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:260107..260340 +
Alignment locationKK037254.1:260396..260466 +
Alignment locationKK037254.1:260536..260626 +
Alignment locationKK037254.1:260787..260885 +

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Properties
Property NameValue
Protein idEWM21099.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100041g42.3669.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:260107..260340 +
KK037254.1supercontigKK037254.1:260396..260466 +
KK037254.1supercontigKK037254.1:260536..260626 +
KK037254.1supercontigKK037254.1:260787..260885 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM
Homology
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BLAST of EWM21099.1 vs. NCBI_GenBank
Match: gi|585101166|gb|EWM21099.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 336.65 bits (862), Expect = 4.782e-117
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 
Query:    1 MDPILFLSRVLELQECPSSCSVSPFPSGERGNCTGQQDPQLVDEKHSTGSNEIAQSAVLKLASELLYHEPGFLEGAVEALDRAPVRRIITRQYRRCLHLVKGRDRAEYTVLSGRDCSCQSFHIMQQRSLRPRCKHVLAVHLAPFLGRLEERVVNDDLYEAYVTQ 164
            MDPILFLSRVLELQECPSSCSVSPFPSGERGNCTGQQDPQLVDEKHSTGSNEIAQSAVLKLASELLYHEPGFLEGAVEALDRAPVRRIITRQYRRCLHLVKGRDRAEYTVLSGRDCSCQSFHIMQQRSLRPRCKHVLAVHLAPFLGRLEERVVNDDLYEAYVTQ
Sbjct:    1 MDPILFLSRVLELQECPSSCSVSPFPSGERGNCTGQQDPQLVDEKHSTGSNEIAQSAVLKLASELLYHEPGFLEGAVEALDRAPVRRIITRQYRRCLHLVKGRDRAEYTVLSGRDCSCQSFHIMQQRSLRPRCKHVLAVHLAPFLGRLEERVVNDDLYEAYVTQ 164
The following BLAST results are available for this feature:
BLAST of EWM21099.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585101166|gb|EWM21099.1|4.782e-117100.00conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9601rna9601Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications