rna9600, rna9600 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9600
Unique Name	rna9600
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2643
Alignment location	KK037254.1:259190..262106 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100041g43.3673.mrna
Orig protein id	gnl\|cribi\|Naga_100041g43.3673
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:259190..262106 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g43	gene9318	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21103.1	cds9569	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9600	rna9600-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:259190..262106-
coding sequence from alignment at KK037254.1:259190..262106-

mRNA sequence

>rna9600 ID=rna9600|Name=rna9600|organism=Nannochloropsis gaditana|type=mRNA|length=2643bp
TGCAATGCGATTAAGCACCTAGGCGCGTCATGGGCTTTGTCCGTCAATAA
AGCCAGTGACGGCTCCCGAGATGCAGCAGATCCGGCGTCTTCGTCCATGC
CTGGCCCATAACCTTTTTTTCGTGCATGCTCAGGCACCATTATCGTCGAT
TTGTATATCAAACATTTAAATCTATAGTGCTGTTACAACATTTTGACATC
CTATTTCTTCCAAACGCAATGGCAAATTGTCCTTCGGAGGTAGTATCATA
TTACGACGTTGTGGAATATTTCAGAAAAATTTCTTGGGGGGCCTTCAAAA
CTGGCGGTCAATAGCTATGGCTACTGTACGGGAAATGTTAACCCGTTTTC
GCTTCGCAGAGGCTACATCCCGTGAGTGCCGCGATGAAGAACGCCGCAAG
GGGGCGCTCAAGCAGATGTGGTACATTGAGGCGTCGAGACGTACCAGGCT
GACAGGAGATGATGATGTTACATATAGCCCGTTGCACGTCGCCTCGCGGG
CGATCATATCGGCATTAGATACGTCCATGGCTGGGCTACGAAGGCGCTTG
CACGGCCACACAAATAATTCAAGTTCGACGAGCGAACCCCACACTCTGCA
CTGCGCTTGCGCACCAGAAACAAAGCCAACAACGAAAGAAAATGGCGCAG
GCAAAACTCTCTCCTTTTATCCTTCCTACCAGTCTGCAAATGAAAGCACG
ACAAGCATCAGCTCTGACATTAATTACAGCGATTGTGGGAGCGGTGCTTT
GCGCCAGACCGGTGCTGCCAAGTACTCCTTGGCCGATGCCAAGAAATTGC
TTGGAAGCTTCCGTCGTAACAGGTGAGCGATTCTTACAAGCGCGTGCTCC
GCCTGAGAGAGACGATGATGCTCTTTCTTGTCATCAAGCACCCGCAGTAA
ATGTACATTCTTTCGACCTCGTGCTGCACTACGCCCCTCAGGCGCTCCCG
GCGACGAAAATTTCCTTTCTAGAGCCCCTTTTCCTATTTTCTTTTCAACT
TAAACGGGCTCTTTCAATCCTGCATCAACCTTCTCCTTCGGCTACCGGTA
TCGCAGCGGCTATCCCATTACATCCCTGTCCCGACAGCCGTGAGTGCTGA
AGGCCGCAAGCGGACAACATGGCTCTCCTCCTGGCTCAGTAGAGTCACTT
GCATGCGCCTCTTCCTCAATCTACCAAGCGAAAGCAAGGGCCATCTACAC
GCGGCCCCCCTGCTTCTTTCCTCACTGGGTCACGTAGGCCTCATACAGAT
CGTCATTCACCACGCGCTCCTCCAGCCGCCCCAGAAACGGAGCAAGGTGT
ACAGCCAAGACATGTTTGCACTATGTGAAGGTAAAAAGTGAATCCCATGA
GCCTGGTCCAAAGAACGCGTGTCTGGGTATTTGAAATGGAAAGGCCCCAG
GCGACATGCGATACGTGCAGATGGTGGAGAAACCTAAAGGAGAAACAATC
GAAAGAAGCGCAGTGTATTATTTGACATACCCGTGGCCTAAGGGATCTCT
GCTGCATTATGTGAAAGCTTTGGCAGGAACAGTCGCGCCCACTGAGCACC
GTATATTCGGCTCGGTCTCGCCTGTCCATTGACGACTGAAATTGAGAGGC
AGAACAATGATGATTACCTCCTCCTCGCAGGCTCACTCACCCTTTCACCA
AGTGGAGGCATCGTCGATATTGTCGCGTGATGATACGACGTACTGGCGCC
CGGTCCAACGCCTGTTTGACCAGCGGTGAGAAAGGAGTATACAAAATGTC
CCAACAATCTCCTCACCTCAACAGCCCCTTCCAGGAAGCCCGGTTCGTGA
TATAGCAGCTCTGACGCAAGTTTCAGCACAGCAGACTGTGCTATCTCGTT
CGAGCCCGTTGAGTGCTTCTCGTCGACCAGTTGAGGATCCTGTTGACCTG
TACAATTGCCACGCTCGCCCGAAGGAAATGGCGATACTGAACAAGAGGAA
GGGCACTCTTGCAGTTCTAAAACCCGAGACAGGAAGAGAATGGGGTCCAT
TCACCTGTGTAAGTAGCTAGAAGAAATATGACGGTGTTTTCCGTGATGTG
AAGGGGGAGAATAAATTCCTGATGTCAAAAAAGCAAAAACAATAATGTAA
TGCAGCCTCTAGAGGTGTGGAGCGATCGTCGACGACGACGAGGAGGGAGG
TTCATTTGACGCTGAGGAACAAGAGCAATGTCTTCACTATTACTTCTTCG
AAACGGACGCCATTGACAGCACAGTGAGCACACAAGGATGGCGAAGCGCT
CCCGATGCCCTCCAAACGCCACACGAGGCGTTGATGGCGCTTACTCCCTT
GTCAGCAATGCCATGGCCCGCGTCTCGGGGCTGGCGAGGCCTTTGGACGA
CAGGCTTGCGCGCCTGGCCGCCCTCGAGGTCCGTGCACTCTCAAAAAAGC
TGGCCTGGATGGGGACTTCTCATGCATATTCGTACCTTCAAGTAGGCAGC
AGCGGGCGGCAGAGGACAGCTTTCCACAGGGGAATCAGCGTTCGAGAGTA
AGGCCGAGCATAGGAAGCCCGGCATCAACAAGGGCTTCCTCGTTAACACG
ATTAGAAGCGTCTCACAGCACAACCGTCGCGAGGAGGAGGCGGACTGCTG
GCGGGCGCACGAGCAGCAAAAGAAGGGGAGCCGGGCAGTGAGA

protein sequence of rna9600

>rna9600-protein ID=rna9600-protein|Name=rna9600|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MATVREMLTRFRFAEATSRECRDEERRKGALKQMWYIEASRRTRLTGDDD
VTYSPLHVASRAIISALDTSMAGLRRRLHGHTNNSSSTSEPHTLHCACAP
ETKPTTKENGAGKTLSFYPSYQSANESTTSISSDINYSDCGSGALRQTGA
AKYSLADAKKLLGSFRRNR

mRNA from alignment at KK037254.1:259190..262106-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9600 ID=rna9600|Name=rna9600|organism=Nannochloropsis gaditana|type=mRNA|length=2917bp|location=Sequence derived from alignment at KK037254.1:259190..262106- (Nannochloropsis gaditana)
TGCAATGCGATTAAGCACCTAGGCGCGTCATGGGCTTTGTCCGTCAATAA
AGCCAGTGACGGCTCCCGAGATGCAGCAGATCCGGCGTCTTCGTCCATGC
CTGGCCCATAACCTTTTTTTCGTGCATGCTCAGGCACCATTATCGTCGAT
TTGTATATCAAACATTTAAATCTATAGTGCTGTTACAACATTTTGACATC
CTATTTCTTCCAAACGCAATGGCAAATTGTCCTTCGGAGGTAGTATCATA
TTACGACGTTGTGGAATATTTCAGAAAAATTTCTTGGGGGGCCTTCAAAA
CTGGCGGTCAATAGCTATGGCTACTGTACGGGAAATGTTAACCCGTTTTC
GCTTCGCAGAGGCTACATCCCGTGAGTGCCGCGATGAAGAACGCCGCAAG
GGGGCGCTCAAGCAGATGTGGTACATTGAGGCGTCGAGACGTACCAGGCT
GACAGGAGATGATGATGTTACATATAGCCCGTTGCACGTCGCCTCGCGGG
CGATCATATCGGCATTAGATACGTCCATGGCTGGGCTACGAAGGCGCTTG
CACGGCCACACAAATAATTCAAGTTCGACGAGCGAACCCCACACTCTGCA
CTGCGCTTGCGCACCAGAAACAAAGCCAACAACGAAAGAAAATGGCGCAG
GCAAAACTCTCTCCTTTTATCCTTCCTACCAGTCTGCAAATGAAAGCACG
ACAAGCATCAGCTCTGACATTAATTACAGCGATTGTGGGAGCGGTGCTTT
GCGCCAGACCGGTGCTGCCAAGTACTCCTTGGCCGATGCCAAGAAATTGC
TTGGAAGCTTCCGTCGTAACAGGTGAGCGATTCTTACAAGCGCGTGCTCC
GCCTGAGAGAGACGATGATGCTCTTTCTTGTCATCAAGCACCCGCAGTAA
ATGTACATTCTTTCGACCTCGTGCTGCACTACGCCCCTCAGGCGCTCCCG
GCGACGAAAATTTCCTTTCTAGAGCCCCTTTTCCTATTTTCTTTTCAACT
TAAACGGGCTCTTTCAATCCTGCATCAACCTTCTCCTTCGGCTACCGGTA
TCGCAGCGGCTATCCCATTACATCCCTGTCCCGACAGCCGTGAGTGCTGA
AGGCCGCAAGCGGACAACATGGCTCTCCTCCTGGCTCAGTAGAGTCACTT
GCATGCGCCTCTTCCTCAATCTACCAAGCGAAAGCAAGGGCCATCTACAC
GCGGCCCCCCTGCTTCTTTCCTCACTGGGTCACGTAGGCCTCATACAGAT
CGTCATTCACCACGCGCTCCTCCAGCCGCCCCAGAAACGGAGCAAGGTGT
ACAGCCAAGACATGTTTGCACTATGTGAAGGTAAAAAGTGAATCCCATGA
GCCTGGTCCAAAGAACGCGTGTCTGGGTATTTGAAATGGAAAGGCCCCAG
GCGACATGCGATACGTGCAGATGGTGGAGAAACCTAAAGGAGAAACAATC
GAAAGAAGCGCAGTGTATTATTTGACATACCCGTGGCCTAAGGGATCTCT
GCTGCATTATGTGAAAGCTTTGGCAGGAACAGTCGCGCCCACTGAGCACC
GTATATTCGGCTCGGTCTCGCCTGTCCATTGACGACTGAAATTGAGAGGC
AGAACAATGATGATTACCTCCTCCTCGCAGGCTCACTCACCCTTTCACCA
AGTGGAGGCATCGTCGATATTGTCGCGTGATGATACGACGTACTGGCGCC
CGGTCCAACGCCTGTTTGACCAGCGGTGAGAAAGGAGTATACAAAATGTC
CCAACAATCTCCTCACCTCAACAGCCCCTTCCAGGAAGCCCGGTTCGTGA
TATAGCAGCTCTGACGCAAGTTTCAGCACAGCAGACTGTGCTATCTCGTT
CGAGCCCGTTGAGTGCTTCTCGTCGACCAGTTGAGGATCCTGTTGACCTG
TACAATTGCCACGCTCGCCCGAAGGAAATGGCGATACTGAACAAGAGGAA
GGGCACTCTTGCAGTTCTAAAACCCGAGACAGGAAGAGAATGGGGTCCAT
TCACCTGTGTAAGTAGCTAGAAGAAATATGACGGTGTTTTCCGTGATGTG
AAGGGGGAGAATAAATTCCTGATGTCAAAAAAGCAAAAACAATAATGTAA
TGCAGCCTCTAGAGGTGTGGAGCGATCGTCGACGACGACGAGGAGGGAGG
TTCATTTGACGCTGAGGAACAAGAGCAATGTCTTCACTATTACTTCTTCG
AAACGGACGCCATTGACAGCACAGTGAGCACACAAGGATGGCGAAGCGCT
CCCGATGCCCTCCAAACGCCACACGAGGCGTTGATGGCGCTTACTCCCTT
GTCAGCAATGCCATGGCCCGCGTCTCGGGGCTGGCGAGGCCTTTGGACGA
CAGGCTTGCGCGCCTGGCCGCCCTCGAGGTCCGTGCACTCTCAAAAAAGC
TGGCCTGGATGGGGACTTCTCATGCATATTCGTACCTTCAAGTAGGCAGC
AGCGGGCGGCAGAGGACAGCTTTCCACAGGGGAATCAGCGGTAAGCTGCC
CCCTTGTTGACTCGCTTGTCGTCTCCTCTCTGTGTCACACCCACGCATCG
CTAATGAATTTACTGCCCCTGAATAATGCACTAGTTCGAGAGTAAGGCCG
AGCATAGGAAGCCCGGCATCAACAAGGGCTTCCTCGTTAACACGATTAGA
AGGTAAAATTGATTTTCTCAGAATATATGGATGGGGGAAGTATTTTTCGC
CTCATCGTTTGTGCGGGAGGGAGGTCACGTAACATTTCACGCGGAACGTG
GCACAATGAAAATGAATGAGATAAAATGAATGAAAAGGACGTTTCTCGCA
GCCCTGCTGTCCTGCTATGCATCCTTAGGGAGTCGGCATAGGGAGCCACA
CCAGGAAGTCGGAGAGATATTTTGAGCAGGCAGGATCCTCCACGCGTGAT
CCGATAACGACCTCTCT

Coding sequence (CDS) from alignment at KK037254.1:259190..262106-

>rna9600 ID=rna9600|Name=rna9600|organism=Nannochloropsis gaditana|type=CDS|length=510bp|location=Sequence derived from alignment at KK037254.1:259190..262106- (Nannochloropsis gaditana)
ATGGCTACTGTACGGGAAATGTTAACCCGTTTTCGCTTCGCAGAGGCTAC
ATCCCGTGAGTGCCGCGATGAAGAACGCCGCAAGGGGGCGCTCAAGCAGA
TGTGGTACATTGAGGCGTCGAGACGTACCAGGCTGACAGGAGATGATGAT
GTTACATATAGCCCGTTGCACGTCGCCTCGCGGGCGATCATATCGGCATT
AGATACGTCCATGGCTGGGCTACGAAGGCGCTTGCACGGCCACACAAATA
ATTCAAGTTCGACGAGCGAACCCCACACTCTGCACTGCGCTTGCGCACCA
GAAACAAAGCCAACAACGAAAGAAAATGGCGCAGGCAAAACTCTCTCCTT
TTATCCTTCCTACCAGTCTGCAAATGAAAGCACGACAAGCATCAGCTCTG
ACATTAATTACAGCGATTGTGGGAGCGGTGCTTTGCGCCAGACCGGTGCT
GCCAAGTACTCCTTGGCCGATGCCAAGAAATTGCTTGGAAGCTTCCGTCG
TAACAGGTGA

Synonyms

Publications