rna9594, rna9594 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9594
Unique Name	rna9594
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1110
Alignment location	KK037254.1:249456..251276 +

Link to JBrowse

Properties


Property Name	Value
Product	poly -specific ribonuclease parn
Orig transcript id	gnl\|cribi\|Naga_100041g35.3675.mrna
Orig protein id	gnl\|cribi\|Naga_100041g35.3675
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:249456..251276 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g35	gene9313	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9594	rna9594-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21105.1	cds9563	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:249456..251276+
coding sequence from alignment at KK037254.1:249456..251276+

mRNA sequence

>rna9594 ID=rna9594|Name=rna9594|organism=Nannochloropsis gaditana|type=mRNA|length=1110bp
ATGACTACGAAGTACAAATGTAACACGAAATCGCGCGCCTTGGTCTTCCC
TGGATCGGATCTTGAGATCATGGCGGAGGAAGAGGACCAGGTAGGCGTCG
CAGGCAGCTGCAGTCAGAGAACGCAGATCGGCATAGCTACAAGTCCCAGT
CATTCGCTCCACGACTGGCATGCACTCCCGCTTGCAGATCGGCCCCGACT
GGTCGATGTTCGCTCAGAGGAAGCTTTTCAGGCGCGGCGTCTGGTCTCAA
GCATCAATTTACCTATCGATGACCTTGTAAACCTACTTTTTGAACTTCCA
GAGCCAAGTGTAGGTCTGGCGATAGTTGCGACTAATTTGGAAGAGGGGGA
AAATGCTGTAAAGTTGCTTGATAGCCGGTATTGGCATTGCATACCTTTCA
TTTTCGTAGAGGATGAGAGTGAAGAAAATAGTGTGTTGTGGAGATCTGCG
GCGACCTTAAGGTTGCTGACGAGCGGGCAAATTTCTCCGCAAGATCGACG
TATAATTTACACACCGAACCCGTTTTTAGTGTCTCATATCGACTTTGTGG
AAGAGTCCTTGGCTGAAACCCATCTTGTGTCCTCATCACAAAGCTTTTAT
ACTTGTTGTGACGTTGGCTGTGGGGCTGGGCGGGATTCTGTGTGGTTGGC
GAAACGAGGACGAGGTTGGCTCGTGCGTTGCGTAGATCGTCTACCACGAT
GTCTAGATAGAGTTCAGCGCCTAGCATGCAGACACGGCGTGTCTAATCTC
ATAGAATGTGAAACGTCCCTTGTCCGAGGCGCACGCGTGCACTCTTCCTC
GACCTCTCCGTCCTTCGAGACAAGAAAGTATGACTTGGTGCTCGCCATCC
GCTTCTTCGAAAGAGAGTTTCTCACTTCCTTGGGTGAGATGGTGCGACCT
GGTGGTGGGTTCTTGTTGCTTGTGTCGTTTGTGGCCAGAGAGGACGGCGT
AGCTTATGAGCATCCGAAAGATCCGAAAAAGGTGCTTCTCGCGGGGGAAC
TCGTTCAGGTATTTGGAACCGGGGGAATGGGCTTTGAGACAGTAGAAAAC
TGCTCGCAAATTTTACCAGATGGACGCGTCATGTCGGCATACTTGGCTCG
GCGATTATGA

protein sequence of rna9594

>rna9594-protein ID=rna9594-protein|Name=rna9594|organism=Nannochloropsis gaditana|type=polypeptide|length=606bp
MTYKCRALQVILGLSGFATSSGVTSMYQNHVFSFIPVINGLPCGRSSHCN
SISPRRAVVQSQYEEVSRLSFPDVLEKIRSIGKEAAFFSLDTEFTGYRQE
ERDEYFDTVQERYLKKKRVAERYLLVQMGLSAFVWDKALEDYKAFTWNIH
LYPSKLQSERIFSCDASSLSFLRSHNLDFNLWVDGVPFLAIDQEASLRKQ
VEDQAEWDLKANAYAGKKPARSNFDPNADAETVELHRQLKEALDKLGPGA
EPFLLPQNLSWFRKKMVQNTIGRHPRKANLWLEVIDPPAAEAGAGVGPTS
TSLSAYNLEQLQVRYVDTEERIKCVQAKKSQALTDIEEAAGAMRILKVIK
DSGRPLVGHNFFLDLLFLYTHFVKPTLPDTAMGFKAKVQHFFPSIYDTKV
LAKSLGVTDEHGDTNLAGLYRKEGGGRVALEGVTGAAHEAGHDAFMTGVI
FSSLLRRIKAKLSENISDCGTSPSPLSSPCSMPSLAYAENWSNKVFMRLT
DVESFELRNFKQIPDRTRVFHVRTRCSGALPHLQHHQLRRAFSSLGSVQI
KALGKHEAYVVFHDITRPPPEVSELKELVSSSGAEADEGLEIVTYEERRV
ALGILW

mRNA from alignment at KK037254.1:249456..251276+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9594 ID=rna9594|Name=rna9594|organism=Nannochloropsis gaditana|type=mRNA|length=1821bp|location=Sequence derived from alignment at KK037254.1:249456..251276+ (Nannochloropsis gaditana)
ATGACATACAAATGCCGGGCTCTACAGGTTATCCTCGGATTATCAGGGTT
TGCCACTTCCTCTGGCGTCACGTCTATGTACCAAAATCACGTATTTTCAT
TTATACCAGTGATAAATGGACTGCCATGCGGGCGATCCAGCCACTGTAAC
TCCATTTCTCCTCGTCGAGCAGTTGTGCAATCACAATACGAAGAGGTTTc
acgcctttctttcccggACGTCCTGGAAAAAATTCGCAGTATTGGGAAAG
AAGCAGCTTTTTTCTCACTCGACACCGAATTTACGGGATAtcgacaggag
gagagagacgagTACTTCGACACTGTCCAAGAGCGCTacttgaaaaaaaa
gagagtGGCTGAGCGCTACCTGCTGGTCCAAATGGGCCTGTCAGCTTTTG
TTTGGGATAAGGCCCTAGAGGATTACAAGGCATTCACATGGAACATTCAC
CTATATCCATCCAAGCTCCAGAGCGAGCGCATCTTCTCCTGCGATGCTTC
GAGTCTCAGCTTCTTGCGGTCTCACAATCTTGACTTCAACCTTTGGGTTG
ACGGCGTCCCTTTTTTGGCAATCGATCAAGAAGCCAGTCTACGCaagcag
gtggaggaccaGGCAGAATGGGACCTCAAGGCAAATGCTTACGCAGGCAA
GAAGCCCGCGCGAAGTAATTTTGATCCCAATGCGGATGCGGAGACGGTGG
AGCTCCACAGGCAGCTCAAAGAGGCTCTGGACAAGCTTGGGCCAGGTGCG
GAACCATTCCTGTTGCCGCAAAATCTATCCTGGTTCAGAAAAAAGATGGT
ACAGAACACAATCGGGCGGCATCCAAGGAAGGCGAATCTGTGGCTCGAAG
TTATCGACCCACCAGCCGCAGAGGCGGGAGCAGGGGTGGGACCGACATCA
ACATCTCTTTCGGCTTACAATCTAGAGCAATTGCAAGTCCGCTATGTCGA
CACTGAGGAGCGAATCAAATGCGTCCAAGCGAAGAAATCCCAAGCGTTGA
CAGATATTGAAGAGGCTGCAGGTGCAATGCGCATTTTGAAAGTGATTAAA
GATTCAGGGCGCCCCCTAGTAGGCCACAATTTTTTCCTAgacctgctctt
cctctacACGCACTTCGTGAAGCCCACTTTACCCGACACAGCCATGGGAT
TCAAAGCCAAAGTCCagcattttttcccctcgaTATATGATACGAAGGTG
CTGGCAAAGTCCCTGGGAGTCACCGACGAGCACGGCGACACAAATCTGGC
GGGCCTCTatcggaaagagggggggggcagggtaGCACTTGAAGGGGTTA
CAGGAGCAGCGCATGAGGCGGGGCACGATGCTTTCATGACGGGCGTGATA
TTTTCAAGCCTTTTGCGAAGGATAAAGGCAAAATTATCGGAGAATATTAG
CGACTGTGGGACGTCTCCGtcacctctttcttctccttgcagCATGCCCA
GCCTCGCGTACGCTGAGAATTGGAGCAATAAGGTATTTATGCGTCTCACA
GACGTTGAGAGCTTTGAGCTGCGGAACTTCAAACAAATTCCAGACCGAAC
TCGTGTCTTCCACGTGCGCACGCGATGCAGCGGTGCTTTGCCCCACTTGC
AGCATCACCAGTTGCGCCGGGCATTCTCTTCCCTTGGCTCCGTCCAAATC
AAGGCTTTAGGCAAGCATGAAGCCTACGTGGTTTTCCATGACATAACAAG
GCCACCGCCGGAGGTGAGCGAGCTGAAAGAGCTTGTGTCGTCTTCGGGGG
CTGAGGCAGATGAGGGACTTGAGATTGTAACGTATGAGGAGCGCCGCGTG
GCGTTGGGAATTTTGTGGTGA

Coding sequence (CDS) from alignment at KK037254.1:249456..251276+

>rna9594 ID=rna9594|Name=rna9594|organism=Nannochloropsis gaditana|type=CDS|length=1821bp|location=Sequence derived from alignment at KK037254.1:249456..251276+ (Nannochloropsis gaditana)
ATGACATACAAATGCCGGGCTCTACAGGTTATCCTCGGATTATCAGGGTT
TGCCACTTCCTCTGGCGTCACGTCTATGTACCAAAATCACGTATTTTCAT
TTATACCAGTGATAAATGGACTGCCATGCGGGCGATCCAGCCACTGTAAC
TCCATTTCTCCTCGTCGAGCAGTTGTGCAATCACAATACGAAGAGGTTTc
acgcctttctttcccggACGTCCTGGAAAAAATTCGCAGTATTGGGAAAG
AAGCAGCTTTTTTCTCACTCGACACCGAATTTACGGGATAtcgacaggag
gagagagacgagTACTTCGACACTGTCCAAGAGCGCTacttgaaaaaaaa
gagagtGGCTGAGCGCTACCTGCTGGTCCAAATGGGCCTGTCAGCTTTTG
TTTGGGATAAGGCCCTAGAGGATTACAAGGCATTCACATGGAACATTCAC
CTATATCCATCCAAGCTCCAGAGCGAGCGCATCTTCTCCTGCGATGCTTC
GAGTCTCAGCTTCTTGCGGTCTCACAATCTTGACTTCAACCTTTGGGTTG
ACGGCGTCCCTTTTTTGGCAATCGATCAAGAAGCCAGTCTACGCaagcag
gtggaggaccaGGCAGAATGGGACCTCAAGGCAAATGCTTACGCAGGCAA
GAAGCCCGCGCGAAGTAATTTTGATCCCAATGCGGATGCGGAGACGGTGG
AGCTCCACAGGCAGCTCAAAGAGGCTCTGGACAAGCTTGGGCCAGGTGCG
GAACCATTCCTGTTGCCGCAAAATCTATCCTGGTTCAGAAAAAAGATGGT
ACAGAACACAATCGGGCGGCATCCAAGGAAGGCGAATCTGTGGCTCGAAG
TTATCGACCCACCAGCCGCAGAGGCGGGAGCAGGGGTGGGACCGACATCA
ACATCTCTTTCGGCTTACAATCTAGAGCAATTGCAAGTCCGCTATGTCGA
CACTGAGGAGCGAATCAAATGCGTCCAAGCGAAGAAATCCCAAGCGTTGA
CAGATATTGAAGAGGCTGCAGGTGCAATGCGCATTTTGAAAGTGATTAAA
GATTCAGGGCGCCCCCTAGTAGGCCACAATTTTTTCCTAgacctgctctt
cctctacACGCACTTCGTGAAGCCCACTTTACCCGACACAGCCATGGGAT
TCAAAGCCAAAGTCCagcattttttcccctcgaTATATGATACGAAGGTG
CTGGCAAAGTCCCTGGGAGTCACCGACGAGCACGGCGACACAAATCTGGC
GGGCCTCTatcggaaagagggggggggcagggtaGCACTTGAAGGGGTTA
CAGGAGCAGCGCATGAGGCGGGGCACGATGCTTTCATGACGGGCGTGATA
TTTTCAAGCCTTTTGCGAAGGATAAAGGCAAAATTATCGGAGAATATTAG
CGACTGTGGGACGTCTCCGtcacctctttcttctccttgcagCATGCCCA
GCCTCGCGTACGCTGAGAATTGGAGCAATAAGGTATTTATGCGTCTCACA
GACGTTGAGAGCTTTGAGCTGCGGAACTTCAAACAAATTCCAGACCGAAC
TCGTGTCTTCCACGTGCGCACGCGATGCAGCGGTGCTTTGCCCCACTTGC
AGCATCACCAGTTGCGCCGGGCATTCTCTTCCCTTGGCTCCGTCCAAATC
AAGGCTTTAGGCAAGCATGAAGCCTACGTGGTTTTCCATGACATAACAAG
GCCACCGCCGGAGGTGAGCGAGCTGAAAGAGCTTGTGTCGTCTTCGGGGG
CTGAGGCAGATGAGGGACTTGAGATTGTAACGTATGAGGAGCGCCGCGTG
GCGTTGGGAATTTTGTGGTGA

Synonyms

Publications