rna9593, rna9593 (mRNA) Nannochloropsis gaditana

Overview
Namerna9593
Unique Namerna9593
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length849
Alignment locationKK037254.1:247606..248865 +

Link to JBrowse

Properties
Property NameValue
Productmethyltransferase type 11
Orig transcript idgnl|cribi|Naga_100041g34.3668.mrna
Orig protein idgnl|cribi|Naga_100041g34.3668
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:247606..248865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100041g34gene9312Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9593rna9593-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21098.1cds9562Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9593 ID=rna9593|Name=rna9593|organism=Nannochloropsis gaditana|type=mRNA|length=849bp
ATGCGGAAATGGCTGCGATTTTATCGCATCGTGTACGGCATCACTCCGCC
ATATAAGATCCTTGTAGATGGAAATTTTATCCACATGGCCCTAAAGGTTA
AAATTGACATCAGAGATCGTCTGAAGAAGATGCTTCTGGTGGAAAACCTT
GCATGCTACGCCCCTCAAGCTGTGCTGGATGAGTTGGCCGCCATGGGTCC
TGACTTCAGGGCAGCACATGAGTGGGTGCAAAGCTGCTGCGATTTGGTAC
CAAACCCAACCATAAAGACCAATCACGATGACAGTGGAAAAAACTATGTT
AGCGCAGGAGCCGCCATTTGCACCATGGTGGGAGAGAAGAACATTGACAA
GTATATGGTGGCCACCCAGGACCAGGAGCTGAAGGCACGGCTTCGGCATG
TGCCATCCGTCGCCCTTCTTTTCGTTTCTCGGGCAGTATTTTTAATGGAA
GCACCTTCAACAAGCTCTCGTCTTTTCTCCGCGAAACAAGAGGGAGAAAA
ATTCCGACTATTGACTGAGGAGGAACGATGTTTGCTAGCCAGCCTCCGAC
ACAAGGAGAAGCCGGTGTTGTCACAAGGTAGTTCCCAAGCAAGCGAGCAG
CAACAGAAGGCTCTCACAAAGAGTAGAGTACGGTTGAAAAAGAGAGCAAA
AGGTCCCAATCCGCTTTCAGTGAAAAAATCTGACAAGGCAAAAGTTCAAA
AGGAAAGGCGGGTGCCACAGGACAAACCTGGCAGCAAGAAATATACGGGA
GGCCAGAAGGGCAATGAAGTAGGAGGAGGCCACGTTAGTTGTGCGAAAAA
ACGGACGCGTCAGAGGAGAAAAGGAAAGCCTGTCCTAGAGAAGGAGTGA
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protein sequence of rna9593

>rna9593-protein ID=rna9593-protein|Name=rna9593|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MTTKYKCNTKSRALVFPGSDLEIMAEEEDQVGVAGSCSQRTQIGIATSPS
HSLHDWHALPLADRPRLVDVRSEEAFQARRLVSSINLPIDDLVNLLFELP
EPSVGLAIVATNLEEGENAVKLLDSRYWHCIPFIFVEDESEENSVLWRSA
ATLRLLTSGQISPQDRRIIYTPNPFLVSHIDFVEESLAETHLVSSSQSFY
TCCDVGCGAGRDSVWLAKRGRGWLVRCVDRLPRCLDRVQRLACRHGVSNL
IECETSLVRGARVHSSSTSPSFETRKYDLVLAIRFFEREFLTSLGEMVRP
GGGFLLLVSFVAREDGVAYEHPKDPKKVLLAGELVQVFGTGGMGFETVEN
CSQILPDGRVMSAYLARRL
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mRNA from alignment at KK037254.1:247606..248865+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9593 ID=rna9593|Name=rna9593|organism=Nannochloropsis gaditana|type=mRNA|length=1260bp|location=Sequence derived from alignment at KK037254.1:247606..248865+ (Nannochloropsis gaditana)
ATGACTACGAAGTACAAATGTAACACGAAATCGCGCGCCTTGGTCTTGTG
AGAAGTTCTAGTTTGTTTGGTTCGGGCAAAGAGTGCCTGTCCATCGGTGA
GGTTAAATGTCCAAGTGCGGATCAATTTAAAATTGAGCTTCGTCATCGCT
TGACCGTCGTGATTTACTCTTCTCTCCCAACAGGGATCTCATCGTAGCCC
TGGATCGGATCTTGAGAtcatggcggaggaagaggaccaGGTAGGCGTCG
CAGGCAGCTGCAGTCAGAGAACGCAGATCGGCATAGCTACAAGTCCCAGT
CATTCGCTCCACGACTGGCATGCACTCCCGCTTGCAGATCGGCCCCGACT
GGTCGATGTTCGCTCAGAGGAAGCTTTTCAGGCGCGGCGTCTGGTCTCAA
GCATCAATTTACCTATCGATGACCTTGTAAACCTACTTTTTGAACTTCCA
GAGCCAAGTGTAGGTCTGGCGATAGTTGCGACTAatttggaagaggggga
aaatgctGTAAAGTTGCTTGATAGCCGGTATTGGCATTGCATACCTTTCA
TTTTCGTAGAGGATGAGAGTGAAGAAAATAGTGTGTTGTGGAGATCTGCG
GCGACCTTAAGGTTGCTGACGAGCGGGCAAATTTCTCCGCAAGATCGACG
TATAATTTACACACCGAACCCGTTTTTAGTGTCTCATATCGACTTTGTGG
AAGAGTCCTTGGCTGAAACCCATCTTGTGTCCTCATCACAAAGCTTTTAT
ACTTGTTGTGACGTTGGCTGTGGGGCTGGGCGGGATTCTGTGTGGTTGGC
GAAACGAGGACGAGGTTGGCTCGTGCGTTGCGTAGATCGTCTACCACGAT
GTCTAGATAGAGTTCAGCGCCTAGCATGCAGACACGGCGTGTCTAATCTC
ATAGAATGTGAAACGTCCCTTGTCCGAGGCGCACGCGTGCactcttcctc
gacctctccGTCCTTCGAGACAAGAAAGTATGACTTGGTGCTCGCCATCC
GCTTCTTCGAAAGAGAGTTTCTCACTTCCTTGGGTGAGATGGTGCGACCT
GGTGGTGGGTTCTTGTTGCTTGTGTCGTTTGTGGCCAGAGAGGACGGCGT
AGCTTATGAGCATCCGAAAGATCCGAAAAAGGTGCTTCTCGCGGGGGAAC
TCGTTCAGGTATTTGGAACCGGGGGAATGGGCTTTGAGACAGTAGAAAAC
TGCTCGCAAATTTTACCAGATGGACGCGTCATGTCGGCATACTTGGCTCG
GCGATTATGA
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Coding sequence (CDS) from alignment at KK037254.1:247606..248865+

>rna9593 ID=rna9593|Name=rna9593|organism=Nannochloropsis gaditana|type=CDS|length=2220bp|location=Sequence derived from alignment at KK037254.1:247606..248865+ (Nannochloropsis gaditana)
ATGACTACGAAGTACAAATGTAACACGAAATCGCGCGCCTTGGTCTTCCC
TGGATCGGATCTTGAGAtcatggcggaggaagaggaccaGGTAGGCGTCG
CAGGCAGCTGCAGTCAGAGAACGCAGATCGGCATAGCTACAAGTCCCAGT
CATTCGCTCCACGACTGGCATGCACTCCCGCTTGCAGATCGGCCCCGACT
GGTCGATGTTCGCTCAGAGGAAGCTTTTCAGGCGCGGCGTCTGGTCTCAA
GCATCAATTTACCTATCGATGACCTTGTAAACCTACTTTTTGAACTTCCA
GAGCCAAGTGTAGGTCTGGCGATAGTTGCGACTAatttggaagaggggga
aaatgctGTAAAGTTGCTTGATAGCCGGTATTGGCATTGCATACCTTTCA
TTTTCGTAGAGGATGAGAGTGAAGAAAATAGTGTGTTGTGGAGATCTGCG
GCGACCTTAAGGTTGCTGACGAGCGGGCAAATTTCTCCGCAAGATCGACG
TATAATTTACACACCGAACCCGTTTTTAGTGTCTCATATCGACTTTGTGG
AAGAGTCCTTGGCTGAAACCCATCTTGTGTCCTCATCACAAAGCTTTTAT
ACTTGTTGTGACGTTGGCTGTGGGGCTGGGCGGGATTCTGTGTGGTTGGC
GAAACGAGGACGAGGTTGGCTCGTGCGTTGCGTAGATCGTCTACCACGAT
GTCTAGATAGAGTTCAGCGCCTAGCATGCAGACACGGCGTGTCTAATCTC
ATAGAATGTGAAACGTCCCTTGTCCGAGGCGCACGCGTGCactcttcctc
gacctctccGTCCTTCGAGACAAGAAAGTATGACTTGGTGCTCGCCATCC
GCTTCTTCGAAAGAGAGTTTCTCACTTCCTTGGGTGAGATGGTGCGACCT
GGTGGTGGGTTCTTGTTGCTTGTGTCGTTTGTGGCCAGAGAGGACGGCGT
AGCTTATGAGCATCCGAAAGATCCGAAAAAGGTGCTTCTCGCGGGGGAAC
TCGTTCAGGTATTTGGAACCGGGGGAATGGGCTTTGAGACAGTAGAAAAC
TGCTCGCAAATTTTACCAGATGGACGCGTCATGTCGGCATACTTGGCTCG
GCGATTATGAATGACTACGAAGTACAAATGTAACACGAAATCGCGCGCCT
TGGTCTTCCCTGGATCGGATCTTGAGAtcatggcggaggaagaggaccaG
GTAGGCGTCGCAGGCAGCTGCAGTCAGAGAACGCAGATCGGCATAGCTAC
AAGTCCCAGTCATTCGCTCCACGACTGGCATGCACTCCCGCTTGCAGATC
GGCCCCGACTGGTCGATGTTCGCTCAGAGGAAGCTTTTCAGGCGCGGCGT
CTGGTCTCAAGCATCAATTTACCTATCGATGACCTTGTAAACCTACTTTT
TGAACTTCCAGAGCCAAGTGTAGGTCTGGCGATAGTTGCGACTAatttgg
aagagggggaaaatgctGTAAAGTTGCTTGATAGCCGGTATTGGCATTGC
ATACCTTTCATTTTCGTAGAGGATGAGAGTGAAGAAAATAGTGTGTTGTG
GAGATCTGCGGCGACCTTAAGGTTGCTGACGAGCGGGCAAATTTCTCCGC
AAGATCGACGTATAATTTACACACCGAACCCGTTTTTAGTGTCTCATATC
GACTTTGTGGAAGAGTCCTTGGCTGAAACCCATCTTGTGTCCTCATCACA
AAGCTTTTATACTTGTTGTGACGTTGGCTGTGGGGCTGGGCGGGATTCTG
TGTGGTTGGCGAAACGAGGACGAGGTTGGCTCGTGCGTTGCGTAGATCGT
CTACCACGATGTCTAGATAGAGTTCAGCGCCTAGCATGCAGACACGGCGT
GTCTAATCTCATAGAATGTGAAACGTCCCTTGTCCGAGGCGCACGCGTGC
actcttcctcgacctctccGTCCTTCGAGACAAGAAAGTATGACTTGGTG
CTCGCCATCCGCTTCTTCGAAAGAGAGTTTCTCACTTCCTTGGGTGAGAT
GGTGCGACCTGGTGGTGGGTTCTTGTTGCTTGTGTCGTTTGTGGCCAGAG
AGGACGGCGTAGCTTATGAGCATCCGAAAGATCCGAAAAAGGTGCTTCTC
GCGGGGGAACTCGTTCAGGTATTTGGAACCGGGGGAATGGGCTTTGAGAC
AGTAGAAAACTGCTCGCAAATTTTACCAGATGGACGCGTCATGTCGGCAT
ACTTGGCTCGGCGATTATGA
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Synonyms
Publications