rna9592, rna9592 (mRNA) Nannochloropsis gaditana

Overview
Namerna9592
Unique Namerna9592
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1755
Alignment locationKK037254.1:246591..247582 +

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF652
Orig transcript idgnl|cribi|Naga_100041g33.3677.mrna
Orig protein idgnl|cribi|Naga_100041g33.3677
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:246591..247582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100041g33gene9311Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9592rna9592-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21107.1cds9561Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9592 ID=rna9592|Name=rna9592|organism=Nannochloropsis gaditana|type=mRNA|length=1755bp
ATGTTTTTGCAAAGAATTTTCCCAGGAACACTCGCACAAACTTGTCAATC
TCTTCGACACCACTTTTCAATCATGTCTATGGGCGATTATCGCGTGGCAG
ACATCTCATTGGCGGATTTTGGTCGCAAGGAAATTCAGCTCGCTGAGGTA
GAGATGCCCGGCCTCATGGCATGTCGCGAAGAGTACGGCGCTGATGCGCT
CAAGGGCGCGCGTATTGCGGGCTCGCTTCACATGACGATCCAAACTGCCG
TACTGATCGAGACACTGAAAGCAATGGGTGGGGACATCCGATGGTGCTCG
TGCAATATTTTCTCCACCCAGGATCACGCGGCGGCGGCGGTCGCCCGCGA
TGAATCGGCGGCTGTATTTGCCTGGAAAGGCGAATCCCTGGAGGAGTATT
GGGAGTGCACGATGAACGCTATCACGTGGCCAACTGACGACGGAAAGGGT
GACGGACCCGACCTGATCGTGGACGACGGCGGGGACATGACCCTTCTGGT
ACATGAAGGATACAAGGCAGAGGAGCTGTACGCCAAGGACGGCACTTTGC
CCGATCCCGCCTCTACCGACAATGCTGAGTTCAAGATTGTTTTGGCGTTG
ATCGCCCGAGAGCTGCCGAAGACTCCCCAAAAGTGGCACAAGGTAGCGGC
TCGCATGTACGGGGTTTCCGAGGAGACCACCACCGGCGTGCACCGACTCT
ACCTGATGGAGAAGAATAAAACACTTCTCTTCCCGGCGATCAACGTCAAT
GACTCAGTCACAAAATCAAAGTTCGACAACTTGTACGGCTGCAAGCACTC
TCTTCCGGACGGGATCATGCGCGCCACGGACGTCATGCTCGCGGGCAAGC
GTGTCGTCATTTGTGGATTCGGCGATGTCGGAAAGGGATGCGCTCAAGCC
ATGAAAGCCGCTGGATCTATCGTTTATGTAACGGAGGTAGACCCCATATG
CGCGTTGCAGGCCTCGATGGAGGGATTCCGCGTCGTCCGACTGTCCTCGG
TGATCGCAGACATCGACATTGTCATCACTACCACTGGCAACAAAGGAATC
ATTATGGCTGAAGACATGGCGAAGATGAAGAACAACGCTATTGTTGGAAA
CATCGGGCACTTCGACAATGAAATTGACATGGACGGCGTGATGAAGGTAG
CCAAGCGTGAAAATATCAAACCTCAGGTGGACCGTTTTGTCTTTCCGGAC
GGACACGGCGTTATCGTTTTAGCTGAGGGTCGACTTCTCAACCTGGGATG
TGCCACTGGTCACCCGTCCTTCGTCATGTCCGCCTCCTTCACGAACCAAA
CGCTGGCCCAGCTTGAGTTGTGGAAGGAGCGCACCTCAGGCAAATACGCC
ACTGGTAAAGTCTACGTCCTGCCCAAGGTTTTGGACGAGAAAGTAGCTCG
CTTGCACTTGGCCTCGCTTGGCGTTGAGCTGACTGAGCTCTCAACCGAAC
AGGCTGAGTACATTGGTATACTAGATTCCTGCGAATGCCTTCGCCTCGGA
GTTATCATATCGTTCCGCCAGAAGAGAAATTTTCATCTTGCAAGCGAAGA
AGGTTCTTGGTATAGCGTGAAAGGAAAAACGTACGAAGTTCACCTTCGAT
ACGACTTTGAAGGCTTCAATGCAATGCTAGAGTGGGTAGAATGGTATGAG
GTGTTAGAAAATAGATGGCGAAATGGCATTAAGAAGATAAACCTTTCGCA
GTACACATGCCTTTATCGACAAATTTTCAAGTACAAGAAGTCATTGAGAG
AATAA
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protein sequence of rna9592

>rna9592-protein ID=rna9592-protein|Name=rna9592|organism=Nannochloropsis gaditana|type=polypeptide|length=282bp
MRKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENL
ACYAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYV
SAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLME
APSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQ
QQKALTKSRVRLKKRAKGPNPLSVKKSDKAKVQKERRVPQDKPGSKKYTG
GQKGNEVGGGHVSCAKKRTRQRRKGKPVLEKE
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mRNA from alignment at KK037254.1:246591..247582+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9592 ID=rna9592|Name=rna9592|organism=Nannochloropsis gaditana|type=mRNA|length=992bp|location=Sequence derived from alignment at KK037254.1:246591..247582+ (Nannochloropsis gaditana)
ATGCGGAAATGGCTGCGATTTTATCGCATCGTGTACGGCATCACTCCGCC
ATATAAGGTATTTATTGAATACTATTATCAATTTCGTGGCCATTTTGGAG
GACTTCGCTCCCTCTAACCCTAATATGTGACAATGTCACTAGGCTAACTG
GGTTTTGAAAACGTCAGACTTGCCTTAGGCCTTCTTTTGTCTTTACCTAG
ATCCTTGTAGATGGAAATTTTATCCACATGGCCCTAAAGGTTAAAATTGA
CATCAGAGATCGTCTGAAGAAGATGCTTCTGGTGGAAAACCTTGCATGCT
ACGCCCCTCAAGCTGTGCTGGATGAGTTGGCCGCCATGGGTCCTGACTTC
AGGGCAGCACATGAGTGGGTGCAAAGCTGCTGCGATTTGGTACCAAACCC
AACCATAAAGACCAATCACGATGACAGTGGAAAAAACTATGTTAGCGCAG
GAGCCGCCATTTGCACCAtggtgggagagaagaacATTGACAAGTATATG
GTGGCCACCCAGGACCAGGAGCTGAAGGCACGGCTTCGGCATGTGCCATC
CGTCGCCCTTCTTTTCGTTTCTCGGGCAGTATTTTTAATGGAAGCACCTT
CAACAAGCTCTCGTCTTTTCTCCGCGAaacaagagggagaaaaattCCGA
CTATTGACTGAGGAGGAACGATGTTTGCTAGCCAGCCTCCGACACAAGGA
GAAGCCGGTGTTGTCACAAGGTAGTTCCCAAGCAAGCGAGCAGCAACAGA
AGGCTCTCACAAAGAGTAGAGTACGGTTGAAAAAGAGAGCAAAAGGTCCC
AATCCGCTTTCAGTGAAAAAATCTGACAAGGCAAAAGTTCAAAAGGAAAG
GCGGGTGCCACAGGACAAACCTGGCAGCAAGAAATATACGGGAGGCCAGA
AGGGCAATGAAGTAGGAGGAGGCCACGTTAGTTGTGCGAAAAAACGGACG
CGtcagaggagaaaaggaaagcctGTCCTAGAGAAGGAGTGA
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Coding sequence (CDS) from alignment at KK037254.1:246591..247582+

>rna9592 ID=rna9592|Name=rna9592|organism=Nannochloropsis gaditana|type=CDS|length=1698bp|location=Sequence derived from alignment at KK037254.1:246591..247582+ (Nannochloropsis gaditana)
ATGCGGAAATGGCTGCGATTTTATCGCATCGTGTACGGCATCACTCCGCC
ATATAAGATCCTTGTAGATGGAAATTTTATCCACATGGCCCTAAAGGTTA
AAATTGACATCAGAGATCGTCTGAAGAAGATGCTTCTGGTGGAAAACCTT
GCATGCTACGCCCCTCAAGCTGTGCTGGATGAGTTGGCCGCCATGGGTCC
TGACTTCAGGGCAGCACATGAGTGGGTGCAAAGCTGCTGCGATTTGGTAC
CAAACCCAACCATAAAGACCAATCACGATGACAGTGGAAAAAACTATGTT
AGCGCAGGAGCCGCCATTTGCACCAtggtgggagagaagaacATTGACAA
GTATATGGTGGCCACCCAGGACCAGGAGCTGAAGGCACGGCTTCGGCATG
TGCCATCCGTCGCCCTTCTTTTCGTTTCTCGGGCAGTATTTTTAATGGAA
GCACCTTCAACAAGCTCTCGTCTTTTCTCCGCGAaacaagagggagaaaa
attCCGACTATTGACTGAGGAGGAACGATGTTTGCTAGCCAGCCTCCGAC
ACAAGGAGAAGCCGGTGTTGTCACAAGGTAGTTCCCAAGCAAGCGAGCAG
CAACAGAAGGCTCTCACAAAGAGTAGAGTACGGTTGAAAAAGAGAGCAAA
AGGTCCCAATCCGCTTTCAGTGAAAAAATCTGACAAGGCAAAAGTTCAAA
AGGAAAGGCGGGTGCCACAGGACAAACCTGGCAGCAAGAAATATACGGGA
GGCCAGAAGGGCAATGAAGTAGGAGGAGGCCACGTTAGTTGTGCGAAAAA
ACGGACGCGtcagaggagaaaaggaaagcctGTCCTAGAGAAGGAGTGAA
TGCGGAAATGGCTGCGATTTTATCGCATCGTGTACGGCATCACTCCGCCA
TATAAGATCCTTGTAGATGGAAATTTTATCCACATGGCCCTAAAGGTTAA
AATTGACATCAGAGATCGTCTGAAGAAGATGCTTCTGGTGGAAAACCTTG
CATGCTACGCCCCTCAAGCTGTGCTGGATGAGTTGGCCGCCATGGGTCCT
GACTTCAGGGCAGCACATGAGTGGGTGCAAAGCTGCTGCGATTTGGTACC
AAACCCAACCATAAAGACCAATCACGATGACAGTGGAAAAAACTATGTTA
GCGCAGGAGCCGCCATTTGCACCAtggtgggagagaagaacATTGACAAG
TATATGGTGGCCACCCAGGACCAGGAGCTGAAGGCACGGCTTCGGCATGT
GCCATCCGTCGCCCTTCTTTTCGTTTCTCGGGCAGTATTTTTAATGGAAG
CACCTTCAACAAGCTCTCGTCTTTTCTCCGCGAaacaagagggagaaaaa
ttCCGACTATTGACTGAGGAGGAACGATGTTTGCTAGCCAGCCTCCGACA
CAAGGAGAAGCCGGTGTTGTCACAAGGTAGTTCCCAAGCAAGCGAGCAGC
AACAGAAGGCTCTCACAAAGAGTAGAGTACGGTTGAAAAAGAGAGCAAAA
GGTCCCAATCCGCTTTCAGTGAAAAAATCTGACAAGGCAAAAGTTCAAAA
GGAAAGGCGGGTGCCACAGGACAAACCTGGCAGCAAGAAATATACGGGAG
GCCAGAAGGGCAATGAAGTAGGAGGAGGCCACGTTAGTTGTGCGAAAAAA
CGGACGCGtcagaggagaaaaggaaagcctGTCCTAGAGAAGGAGTGA
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Synonyms
Publications