EWM21107.1, cds9561 (CDS) Nannochloropsis gaditana

Overview
NameEWM21107.1
Unique Namecds9561
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:246591..246647 +
Alignment locationKK037254.1:246791..247582 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21107.1
ProductProtein of unknown function DUF652
Orig transcript idgnl|cribi|Naga_100041g33.3677.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:246591..246647 +
KK037254.1supercontigKK037254.1:246791..247582 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
GO:0032040small-subunit processome
Vocabulary: INTERPRO
TermDefinition
IPR006984Fcf1/Utp23
IPR029060PIN_domain-like
Homology
BLAST of EWM21107.1 vs. NCBI_GenBank
Match: gi|585101174|gb|EWM21107.1| (Protein of unknown function DUF652 [Nannochloropsis gaditana])

HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0
Query:    1 MRKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLACYAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPLSVKKSDKAKVQKERRVPQDKPGSKKYTGGQKGNEVGGGHVSCAKKRTRQRRKGKPVLEKE 282
            MRKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLACYAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPLSVKKSDKAKVQKERRVPQDKPGSKKYTGGQKGNEVGGGHVSCAKKRTRQRRKGKPVLEKE
Sbjct:    1 MRKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLACYAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPLSVKKSDKAKVQKERRVPQDKPGSKKYTGGQKGNEVGGGHVSCAKKRTRQRRKGKPVLEKE 282          
BLAST of EWM21107.1 vs. NCBI_GenBank
Match: gi|553195865|ref|XP_005856221.1| (rrna-processing utp23-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422292836|gb|EKU20138.1| rrna-processing utp23-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0
Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 0
Query:   20 ILVDGNFIHMALKVKIDIRDRLKKMLLVENLACYAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPLSVKKSDKAKVQKERRVPQDKPGSKKYTGGQKGNEVGGGHVSCAKKRTRQRRKGKPVLEKE 282
            ILVDGNFIHMALKVKIDIRDRLKKMLLVENLACYAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPS SSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPLSVKKSDKAKVQKERRVPQDKPGSKKYTGGQKGNEVGGGHVSCAKKRTRQRRKGKPVLEKE
Sbjct:    1 ILVDGNFIHMALKVKIDIRDRLKKMLLVENLACYAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSISSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPLSVKKSDKAKVQKERRVPQDKPGSKKYTGGQKGNEVGGGHVSCAKKRTRQRRKGKPVLEKE 263          
BLAST of EWM21107.1 vs. NCBI_GenBank
Match: gi|1214700646|gb|OWZ13187.1| (RRNA-processing protein [Phytophthora megakarya])

HSP 1 Score: 137.887 bits (346), Expect = 4.785e-36
Identity = 85/233 (36.48%), Postives = 128/233 (54.94%), Query Frame = 0
Query:    1 MRKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLAC--YAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQ----GSSQASEQQQKALTKSRVRLKKRAKGPNPLSVKKS 227
            +RK LR +  + GI PPYK+L+DGNFI M +++K+D+ +R+ K L V+   C  Y P+A L+EL  +G   + A+E  +S         +   H+      +     I T++G+KN  K++V TQ+ EL+  LR VP V LL+++R+V + E  S ++             ++ +EE+  +A L   EK  L Q       Q  E QQ+ LT      KKRAKGPNPLS+KKS
Sbjct:    9 IRKALRQFHFLCGIKPPYKVLLDGNFIAMCMQMKVDVHERVPKYLQVKPHECEFYVPRAALEELKMLGEAMKEAYELAKSF-------KVAETHNQPKNEAMDVSKCIQTIIGDKNDGKFVVCTQEVELRKALRQVPGVPLLYLNRSVLVFEEISRAT-----------LAIVRQEEKANMAKLDVNEKRKLDQMQEDNDDQTHEPQQQRLT------KKRAKGPNPLSMKKS 217          
BLAST of EWM21107.1 vs. NCBI_GenBank
Match: gi|673054049|ref|XP_008880985.1| (hypothetical protein H310_14829 [Aphanomyces invadans] >gi|574463293|gb|ETV90375.1| hypothetical protein H310_14829 [Aphanomyces invadans])

HSP 1 Score: 125.176 bits (313), Expect = 3.367e-31
Identity = 87/233 (37.34%), Postives = 128/233 (54.94%), Query Frame = 0
Query:    1 MRKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLACYAPQAVLDELAAM--GPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPLSVKKSDKAK 231
            +RK LR ++ + GI PPYK+L+DGNFI M +K+ +DI  RL   L   N   +  +AVLDEL  +    D RAA E   S  ++V      TN  D+  + ++A       +G +N  K++VATQ+ EL+++LR VP V L++++R+V + E  S ++   S K +  K   L   E       + K + V S    +A E++         RL KRAKGPNPLSVKK+ K K
Sbjct:    9 IRKALRQFQFLCGIKPPYKVLLDGNFIAMCIKMHVDIAVRLPTFLQTNNCTYFVTRAVLDELKLLSDNADMRAAWE-AASSFEVVEGDPDATN--DATNSMLAA-------IGSRNDRKFIVATQETELRSQLRRVPGVPLIYLNRSVLVFEDMSEATLRISRKDDHAKAAKLNAGE-------KRKLEAVASSTVREAPEKKS--------RLVKRAKGPNPLSVKKATKPK 216          
BLAST of EWM21107.1 vs. NCBI_GenBank
Match: gi|953487659|emb|CEG48487.1| (Uncharacterized proteins of PilT N-term./Vapc superfamily [Plasmopara halstedii])

HSP 1 Score: 125.176 bits (313), Expect = 4.000e-31
Identity = 80/229 (34.93%), Postives = 126/229 (55.02%), Query Frame = 0
Query:    1 MRKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLAC--YAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPLSVKKS 227
            +RK LR +  + GI PPYK+L+DGNFI M +++K+++ +R+ K L V+   C  Y P+AVLDEL  +G   + A+   +S         +    +D  +  V     I T++G+KN  K+ V TQ+ EL+  LR VP V L++++R+V + E  S ++             ++ +EE   +A L    K  L Q   Q ++ +     + R+ +KKRAKGPNPLS KKS
Sbjct:    9 IRKALRQFHFLCGIKPPYKVLLDGNFIAMCIQMKVNVNERVSKYLQVKQHECEFYVPRAVLDELKTLGEATKEAYHLAKS----FKVAEVFGQAEDDKQVTVDVSKYIQTIIGDKNDRKFFVCTQEVELRKALRLVPGVPLIYLNRSVLVFEEISRAT-----------LAIVRQEEEANMAKLDINVKRKLEQ--IQENKHETGYAEQGRI-VKKRAKGPNPLSFKKS 219          
BLAST of EWM21107.1 vs. NCBI_GenBank
Match: gi|698781557|ref|XP_009823822.1| (hypothetical protein H257_02034 [Aphanomyces astaci] >gi|574121546|gb|ETV87023.1| hypothetical protein H257_02034 [Aphanomyces astaci])

HSP 1 Score: 122.865 bits (307), Expect = 2.393e-30
Identity = 86/233 (36.91%), Postives = 127/233 (54.51%), Query Frame = 0
Query:    1 MRKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLACYAPQAVLDELAAMG--PDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPLSVKKSDKAK 231
            +RK LR ++ + GI PPYK+L+DGNFI M +K+ +DI  RL   L  +    +  +AVLDEL  +    D RAA E   S  ++V   +   +  D   + V+A       VG +N  K++VATQ+ EL+ RLR VP V L++++R+V + E  S ++   S K +  K   L + E       + K + V S    +A E+        + RL KRAKGPNPLS+KK+ K K
Sbjct:    9 IRKSLRQFQFLCGIKPPYKVLLDGNFIAMCIKMHVDIAVRLPSFLQTDKCTYFVTRAVLDELKLLSDDADMRAAWE-AASAFEVVEGGSDDDDSTDVTSSMVAA-------VGARNDKKFIVATQETELRGRLRRVPGVPLIYLNRSVLVFEDMSEATLRISRKDDHAKETKLNDSE-------KRKLEAVASSAPKEAPEK--------KARLVKRAKGPNPLSMKKATKPK 218          
BLAST of EWM21107.1 vs. NCBI_GenBank
Match: gi|695396842|ref|XP_009521587.1| (hypothetical protein PHYSODRAFT_350283 [Phytophthora sojae] >gi|348686484|gb|EGZ26299.1| hypothetical protein PHYSODRAFT_350283 [Phytophthora sojae])

HSP 1 Score: 122.865 bits (307), Expect = 2.971e-30
Identity = 82/231 (35.50%), Postives = 133/231 (57.58%), Query Frame = 0
Query:    1 MRKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVE--NLACYAPQAVLDELAAMGPDFRAAHEWVQS--CCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPLSVKKS 227
            +RK LR +  + GI PPYK+L+DGNFI M +++K+D+++R+ K L V+   +  Y P+A L+EL  +G   + A+E  Q+    ++   P  KT+ D      V     + +++G+KN  K++V TQ+ EL+  LR VP V L++++R+V + E  S ++             ++ ++E+  +A L   EK  L Q   Q  E+ +    K R+  KKRAKGPNPLS+KKS
Sbjct:    9 IRKALRQFHFLCGIKPPYKVLLDGNFIAMCVQMKVDVQERVPKFLQVKAHEVEFYVPRAALEELKMLGEATKEAYELAQNFKVAEVYDQP--KTDGDAP----VDVSKVVQSIIGDKNDRKFVVCTQEVELRKALRLVPGVPLIYLNRSVLVFEDISRAT-----------LAIVRQDEKANMAKLDVNEKRKLEQ--MQGGEEGEDHEEKQRL-TKKRAKGPNPLSMKKS 219          
BLAST of EWM21107.1 vs. NCBI_GenBank
Match: gi|675174453|ref|XP_008896111.1| (hypothetical protein PPTG_04040 [Phytophthora parasitica INRA-310] >gi|566013346|gb|ETI36257.1| hypothetical protein F443_17608 [Phytophthora parasitica P1569] >gi|567950741|gb|ETK76449.1| hypothetical protein L915_17145 [Phytophthora parasitica] >gi|567979410|gb|ETL29889.1| hypothetical protein L916_17041 [Phytophthora parasitica] >gi|568008903|gb|ETL83117.1| hypothetical protein L917_16868 [Phytophthora parasitica] >gi|568038808|gb|ETM36324.1| hypothetical protein L914_16947 [Phytophthora parasitica] >gi|568038831|gb|ETM36346.1| hypothetical protein L914_16946 [Phytophthora parasitica] >gi|568103779|gb|ETN18436.1| hypothetical protein PPTG_04040 [Phytophthora parasitica INRA-310] >gi|570317003|gb|ETO64951.1| hypothetical protein F444_17649 [Phytophthora parasitica P1976] >gi|570940794|gb|ETP06051.1| hypothetical protein F441_17477 [Phytophthora parasitica CJ01A1] >gi|570971041|gb|ETP34160.1| hypothetical protein F442_17463 [Phytophthora parasitica P10297] >gi|970659619|gb|KUF97243.1| hypothetical protein AM588_10011331 [Phytophthora nicotianae])

HSP 1 Score: 122.479 bits (306), Expect = 3.410e-30
Identity = 79/224 (35.27%), Postives = 124/224 (55.36%), Query Frame = 0
Query:    1 MRKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLAC--YAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPL 222
            +RK LR +  + GI PPYK+L+DGNFI M L++K+D+ +R+ K L V+   C  Y P+A LDEL  +G   + A++  +S         +    +D  +  V     I +++GEKN  K++V TQ+ EL+  LR VP V L++++R+V + E  S ++             ++ +EE+  +A L   EK  L Q   Q  E ++      R++ KKRAKGPNPL
Sbjct:    9 IRKALRQFHFLCGIKPPYKVLLDGNFIAMCLQMKVDVHERVPKYLQVKPHECEFYVPRAALDELKTLGEATKEAYDLAKS----FKVAEVYGQSEDEKQETVDVSKYIQSIIGEKNERKFVVCTQEVELRKALRLVPGVPLIYLNRSVLVFEEISRAT-----------LAIVRQEEKASMAKLDVNEKRKLEQ--MQEGESEESREEHQRLK-KKRAKGPNPL 214          
BLAST of EWM21107.1 vs. NCBI_GenBank
Match: gi|970624103|gb|KUF72060.1| (rRNA-processing protein utp23 [Phytophthora nicotianae])

HSP 1 Score: 122.479 bits (306), Expect = 4.305e-30
Identity = 79/224 (35.27%), Postives = 124/224 (55.36%), Query Frame = 0
Query:    1 MRKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLAC--YAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSRVRLKKRAKGPNPL 222
            +RK LR +  + GI PPYK+L+DGNFI M L++K+D+ +R+ K L V+   C  Y P+A LDEL  +G   + A++  +S         +    +D  +  V     I +++GEKN  K++V TQ+ EL+  LR VP V L++++R+V + E  S ++             ++ +EE+  +A L   EK  L Q   Q  E ++      R++ KKRAKGPNPL
Sbjct:    9 IRKALRQFHFLCGIKPPYKVLLDGNFIAMCLQMKVDVHERVPKYLQVKPHECEFYVPRAALDELKTLGEATKEAYDLAKS----FKVAGVYGQSEDEKQETVDVSKYIQSIIGEKNERKFVVCTQEVELRKALRLVPGVPLIYLNRSVLVFEEISRAT-----------LAIVRQEEKASMAKLDVNEKRKLEQ--MQEGESEESREEHQRLK-KKRAKGPNPL 214          
BLAST of EWM21107.1 vs. NCBI_GenBank
Match: gi|971515384|dbj|GAQ82813.1| (PIN domain containing protein [Klebsormidium nitens])

HSP 1 Score: 120.553 bits (301), Expect = 5.069e-29
Identity = 87/272 (31.99%), Postives = 131/272 (48.16%), Query Frame = 0
Query:    1 MRKWLRFYRIVYGITPPYKILVDGNFIHMALKVKID----IRDRLKKMLLVENLACYAPQAVLDELAAMGPDFRAAHEWVQS-----CCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEKPVLSQGSSQASEQQQKALTKSR-------VRLKKRAKGPNPLSVKKSDKAKVQKERRVPQDKPGSKKY--TGGQKG 254
            +RK +RFY++ +G   PYK+L+DGNFIH ++  +      IRD L K            + +  EL A+GP+F  +    ++     C    P P               A   + +MVG+ N + + VA+QD EL+ RLR VP  ALLF+S A  ++E PS + +  +   E E+  L   E+R  L  L   +  V +   S A+E  Q    ++R        R +KR KGPNPLS+KK         ++    K GSK+   +GG +G
Sbjct:    9 VRKTIRFYKVCFGFKEPYKVLLDGNFIHQSVHSQAAGQGAIRDVLHKFFSGATKPMVT-RCISAELRALGPEFAKSSSAARTLDMARCIHETPVP---------------ASECVLSMVGQDNHEHFFVASQDAELRKRLRTVPGTALLFLSTAGLILEPPSETQQKVAKLSEAERLHLNEREQRAALRQLEAAQAAVPAPVESPAAEAPQSEHPEARGQEAAPGPRKRKRPKGPNPLSMKK---------KKAEDGKGGSKQISQSGGAEG 255          
The following BLAST results are available for this feature:
BLAST of EWM21107.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101174|gb|EWM21107.1|0.000e+0100.00Protein of unknown function DUF652 [Nannochloropsi... [more]
gi|553195865|ref|XP_005856221.1|0.000e+099.62rrna-processing utp23-like protein, partial [Nanno... [more]
gi|1214700646|gb|OWZ13187.1|4.785e-3636.48RRNA-processing protein [Phytophthora megakarya][more]
gi|673054049|ref|XP_008880985.1|3.367e-3137.34hypothetical protein H310_14829 [Aphanomyces invad... [more]
gi|953487659|emb|CEG48487.1|4.000e-3134.93Uncharacterized proteins of PilT N-term./Vapc supe... [more]
gi|698781557|ref|XP_009823822.1|2.393e-3036.91hypothetical protein H257_02034 [Aphanomyces astac... [more]
gi|695396842|ref|XP_009521587.1|2.971e-3035.50hypothetical protein PHYSODRAFT_350283 [Phytophtho... [more]
gi|675174453|ref|XP_008896111.1|3.410e-3035.27hypothetical protein PPTG_04040 [Phytophthora para... [more]
gi|970624103|gb|KUF72060.1|4.305e-3035.27rRNA-processing protein utp23 [Phytophthora nicoti... [more]
gi|971515384|dbj|GAQ82813.1|5.069e-2931.99PIN domain containing protein [Klebsormidium niten... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9592rna9592Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications