rna958, rna958 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna958
Unique Name	rna958
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	951
Alignment location	CM002456.1:831619..834638 +

Link to JBrowse

Properties


Property Name	Value
Product	pantoate--beta-alanine ligase
Orig transcript id	gnl\|cribi\|Naga_100124g6.8334.mrna
Orig protein id	gnl\|cribi\|Naga_100124g6.8334
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:831619..834638 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100124g6	gene921	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna958	rna958-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29713.1	cds958	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:831619..834638+
coding sequence from alignment at CM002456.1:831619..834638+

mRNA sequence

>rna958 ID=rna958|Name=rna958|organism=Nannochloropsis gaditana|type=mRNA|length=951bp
ATGGATATGGTAAACGCAAGCAAGCCAGGCAGGGCCCGAGCACTCGCATG
CCGTCGTCGAGAACGCAGAAACAGAGCACCGCGAAAAGGAACAACACAGT
ATTATCACCTGCAAACTGTGCAAACCACGCCAACCAGAACTGAGACGTTT
GTGGTTATAATGCATAGTCAACATTGGGATTCCTTCCTTAGTGAAGCATG
CTCACACTTGCTGACTTGTGGACGGCAAACAGCAAAGTTTTCTTGGAGCG
GTCCGTCATTTTCAAGCAAAGCACTCAGAATGGCAGCAACGTCCCCCGTC
AAGTCTCCCACCTCCCCTGCATCCTTGCCTCAAATTCCCTCATTAGCCAA
ATACAAGCTAGTATTTCTTGGAGATCAAGGTGTCGGGAAAACATCCATCA
TTACTCGATTCATGTACGACACGTTCGAGAAAAATTATCAGGCAACGATT
GGAATCGACTTCTTGTCCAAGACTATGTACCTGGAGGACCGCACCGTTCG
TTTGCAGCTGTGGGATACAGCTGGGCAAGAGCGCTTTCGCAGTTTAATTC
CAAGCTATATTCGAGATTCATCTGTGGCAGTAGTAGTATATGACATTACA
AACAGGGCTTCTTTTCTTAATACGTCCAAATGGGTTGACGATGTGCGAAA
TGAGCGTGGAAATGATGTTATAATAATGTTGGTGGGTAACAAGACCGATT
TAAGTGACCGAAGGCAAGTGTCCACAGAAGAGGGCGAGGACAAAGCAAAG
CAGGACAACATCATGTTCATCGAGACGTCCGCTAAGGCGGGATTCAACAT
CAAACCCTTGTTCAGGAAACTGGCGACCGCACTGCCGGGAATGGAATCCG
CGCAAACTCAAGGCAGCGCGAACTTGATCGACATCAAGTTGGCAGCCGCT
CCTGCCTCTTCCTCCGAACAAGCTGATACCAGATCACGCTGTGCGTGCTA
G

protein sequence of rna958

>rna958-protein ID=rna958-protein|Name=rna958|organism=Nannochloropsis gaditana|type=polypeptide|length=188bp
MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFG
QKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERS
AAPVVYKSLRAAEQAFCNSETSISAAELRKIVRDVLAREELIHTVEYVSV
ARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII

mRNA from alignment at CM002456.1:831619..834638+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna958 ID=rna958|Name=rna958|organism=Nannochloropsis gaditana|type=mRNA|length=3020bp|location=Sequence derived from alignment at CM002456.1:831619..834638+ (Nannochloropsis gaditana)
TGTGTTGTTCCTTTTCGCGGTGCTCTGTTTCTGCGTTCTCGACGACGGCA
TGCGAGTGCTCGGGCCCTGCCTGGCTTGCtagggggggagcggagacGAG
aacgagggcgagaaagagggcgaaAACGAGGACGATAACtagggagaagg
ggacaaTGCCGTGGTCGGTTCATGGGACAGTCGGGATCAACCTCGCCATC
GGTAGCCCGACCAGCACCCTGCCAACAACCCAGACTCGAGCGCAGACGGG
CGGCGGACGTCACCACTCATGACAAGCAGCATACCATTGAGATAAAACAA
ATTACGTCCCTTTGAAGCAGGAAGATGAAATTGTGCATTCAAATCTTTCA
AATTTACCTTGAAACACACTCTTAACTAGTATGTTGCGAGCTTTCCCGCT
CCTAGTGGAAGTGGACCGCTCGAGATGCTTTTACCACAGCAATGCAACCT
TGCGTTTACCATATCCATAGCTTCCTCCGATTTTATTGGGCTCCCCGATC
GAACAAATTATTTGATTACTCATctcaaaaagaaaagcaacAATTCATGC
GTCAGCTATTTTTCATCCAGGATGAAAAATGGGGTCTGATTGCGCATACG
ACCCAGCCTGCACTCCGGCCATCTTGTGAGAGCAACAGCTCGTAGGTGCA
ACAAGTTGCTAGAAGCTGACAGGAAAGGTAAGCCATTTTTCAAAATATAG
AGGCTTGATTTTGTTGCTGCAGCAAAAGTTTGATTGGGAAGAAGTGAAGG
GGGCAAAAGATCCAAAAAGATAGATTGTGGATTTCTGGTTTTCCGCTTGC
TTTTCTAAAAGAGAAGGGATCGGAAAGGGGGACCGAATGGAGGATCGTAG
GCTGTAGACAGTCATACAAATTATCAACCATCGCATAAGTTGCATGAAAG
ACCAGACTGACCAGATTACCTTCATGGCCACGGCAGACAGGACGAACGAC
AATCGCAGCGAAGAGACCAATggcaagcagcagcagaggaACGTCTCGGT
AAGCCTTTTGAAATAGACCTCTTCTCTGACCTGATTGCGTTCGCCTCCGC
ACTCTAACTTTTGATGAGCATGCCATGCCATCCTGTACCTCTTCCGTTGT
TACTCACTCTCTTTTCATGGCGACTTTTTCTCCTGGTAGCATCTTACGGA
CGCGAGCCGATATGTCGGCTGTTCGTAGAAGTTTCGGTAGCCTGTGTTCC
GTGGGCTTTGTGCCAACAATGGGTGCTCTCCACCAGGGTCATCTACACCT
CATGGAGGTAGGAAACTATTTTTGTGGTCGAAGAAGTATGAGATCTTCAT
CATCTTGACTCCTCACCCCATCGCGCACAAACTATTTATGTTGAAGCGAG
CACGGCGAGAGAATGATATTCTTGTCGTGAGCATATTTGTCAATCCCAAG
GTAAGTTGCAGACTACAGTATCGCAGGGGAGATCTTAATGGAGAAGGTAC
AATGAGAAATTGAGGACATACTCTTCATACCGTAGCAATTTGGGCCCCAC
GAGGACTTCGATAAATATCCCCGACACCTGGAGAATGACGCTAAACTCGT
CGTCGAGAAAGGTACAAATATGCAATCTTTTTTCCATGGGATGGAAAAGT
ATGAACTTAAAAACCTTTCGAACAGGCGTGGACTTCATCTTTGCTCCTGG
GGTGGCGGATATGTATACACCTTCTCATCGCTGTTACGTTGTGCCCGAGG
GATTTGAGCATTTAGCAGAGGGAAAGTCGCGGCCTGGCCATTTCAAGGGC
GTCGCCACAATTGTAACGAAGCTTTTTGGCATCGTGCAACCGACAAAAGT
aaggaaggaaaggtatCGGACCAACTTCTATATTTAAGACAGAGCATGCA
CGGCTTGCCTCATATAACACTGTGTACCCCCTCTTGGACTGTTCATATAG
ACGACACGTGTAAAAATACACGTATGCATCCTACATTAAGAGTTTGGAAT
TTCAATCCTCACTTTCCCATGACGTATGATACCAACTTCGCGCAAAATAC
CATCAAGGCATATTTCGGCCAAAAAGACGCAATGCAGTGTGTCCTGATGC
GACGGTTGGTGGAAGACCtgaacctcccccctgcaATCGTCGTGTGTGAC
ACGGGTAAGTAACGAGCATTATTGACAAACAAAAGTGTGATTTTGTACCG
TTCCATCGAGCCAAGGACCCAGTACACATGCATCCAATTCACATTTTCGC
TGGCATTTTACATTGTCCATGCTCAGTTCGAGAAAAAGATGGCCTTGCTA
TGAGCAGCCGCAACGCATACCTGAGCCAGCATGTACGTTTGGGGGACTGA
CCTTTGTCCATTGTCCTCGTCTCATGCAATATTTATTATTCATGTAAACA
GGAGCGCAGTGCTGCCCCTGTTGTGTATAAGTCTCTTCGAGCCGCTGAAC
AGGCGTTTTGCAACTCAGAAACCAGCATCTCGGCGGCAGAGCTGCGAAAG
ATTGTCCGAGATGTTCTTGCACGAGTAAGGCAGCCCTCTCCTTACATACC
CTGCTAAGTCTTGCTACATTTCCCTTAATCGATAAATAAACCGTGCAAAT
TATTCTATCTCAGGAGGAGCTGATTCATACCGTTGAATACGTTTCAGTTG
CGCGGAAAGACACAATGGAAGAATTGGAGGATATTGTGCAGCCAAATGAA
GGAGCTGTTATATCACTTGCTGTACGTCTTGGTAAAGTACGACTAATTGA
CAATGTTATCATATGAATTGTCAATAATCAAAGCGCAGCGAAAATACTCT
TGATATGACAAGTTGAGAGGCCTTAAACGAGGAAAATTATATTTGAATAG
AAAAGAGGGGCTATCTTTCCGATGCCTTTTTCTCTCAGTACCTTTTCACG
ACCAGAGCTAGGTTCTCAATTTGATTTAATCGACAAGAGACCTTTTCTGA
TTACAAATGCCATGCGCAAACCCTTCTCAAGCGTTTTCGAGAATCTCCCG
CCCTTTGCTTACTTGGCAAGTTTTCTTGTGAAAGTAATTGACAATAGAAA
AACATGATCCCTCCAATACG

Coding sequence (CDS) from alignment at CM002456.1:831619..834638+

>rna958 ID=rna958|Name=rna958|organism=Nannochloropsis gaditana|type=CDS|length=2835bp|location=Sequence derived from alignment at CM002456.1:831619..834638+ (Nannochloropsis gaditana)
ATGTATACACCTTCTCATCGCTGTTACGTTGTGCCCGAGGGATTTGAGCA
TTTAGCAGAGGGAAAGTCGCGGCCTGGCCATTTCAAGGGCGTCGCCACAA
TTGTAACGAAGCTTTTTGGCATCGTGCAACCGACAAAAGCATATTTCGGC
CAAAAAGACGCAATGCAGTGTGTCCTGATGCGACGGTTGGTGGAAGACCt
gaacctcccccctgcaATCGTCGTGTGTGACACGGTTCGAGAAAAAGATG
GCCTTGCTATGAGCAGCCGCAACGCATACCTGAGCCAGCATGAGCGCAGT
GCTGCCCCTGTTGTGTATAAGTCTCTTCGAGCCGCTGAACAGGCGTTTTG
CAACTCAGAAACCAGCATCTCGGCGGCAGAGCTGCGAAAGATTGTCCGAG
ATGTTCTTGCACGAGAGGAGCTGATTCATACCGTTGAATACGTTTCAGTT
GCGCGGAAAGACACAATGGAAGAATTGGAGGATATTGTGCAGCCAAATGA
AGGAGCTGTTATATCACTTGCTGTACGTCTTGGTAAAGTACGACTAATTG
ACAATGTTATCATATGAATGTATACACCTTCTCATCGCTGTTACGTTGTG
CCCGAGGGATTTGAGCATTTAGCAGAGGGAAAGTCGCGGCCTGGCCATTT
CAAGGGCGTCGCCACAATTGTAACGAAGCTTTTTGGCATCGTGCAACCGA
CAAAAGCATATTTCGGCCAAAAAGACGCAATGCAGTGTGTCCTGATGCGA
CGGTTGGTGGAAGACCtgaacctcccccctgcaATCGTCGTGTGTGACAC
GGTTCGAGAAAAAGATGGCCTTGCTATGAGCAGCCGCAACGCATACCTGA
GCCAGCATGAGCGCAGTGCTGCCCCTGTTGTGTATAAGTCTCTTCGAGCC
GCTGAACAGGCGTTTTGCAACTCAGAAACCAGCATCTCGGCGGCAGAGCT
GCGAAAGATTGTCCGAGATGTTCTTGCACGAGAGGAGCTGATTCATACCG
TTGAATACGTTTCAGTTGCGCGGAAAGACACAATGGAAGAATTGGAGGAT
ATTGTGCAGCCAAATGAAGGAGCTGTTATATCACTTGCTGTACGTCTTGG
TAAAGTACGACTAATTGACAATGTTATCATATGAATGTATACACCTTCTC
ATCGCTGTTACGTTGTGCCCGAGGGATTTGAGCATTTAGCAGAGGGAAAG
TCGCGGCCTGGCCATTTCAAGGGCGTCGCCACAATTGTAACGAAGCTTTT
TGGCATCGTGCAACCGACAAAAGCATATTTCGGCCAAAAAGACGCAATGC
AGTGTGTCCTGATGCGACGGTTGGTGGAAGACCtgaacctcccccctgca
ATCGTCGTGTGTGACACGGTTCGAGAAAAAGATGGCCTTGCTATGAGCAG
CCGCAACGCATACCTGAGCCAGCATGAGCGCAGTGCTGCCCCTGTTGTGT
ATAAGTCTCTTCGAGCCGCTGAACAGGCGTTTTGCAACTCAGAAACCAGC
ATCTCGGCGGCAGAGCTGCGAAAGATTGTCCGAGATGTTCTTGCACGAGA
GGAGCTGATTCATACCGTTGAATACGTTTCAGTTGCGCGGAAAGACACAA
TGGAAGAATTGGAGGATATTGTGCAGCCAAATGAAGGAGCTGTTATATCA
CTTGCTGTACGTCTTGGTAAAGTACGACTAATTGACAATGTTATCATATG
AATGTATACACCTTCTCATCGCTGTTACGTTGTGCCCGAGGGATTTGAGC
ATTTAGCAGAGGGAAAGTCGCGGCCTGGCCATTTCAAGGGCGTCGCCACA
ATTGTAACGAAGCTTTTTGGCATCGTGCAACCGACAAAAGCATATTTCGG
CCAAAAAGACGCAATGCAGTGTGTCCTGATGCGACGGTTGGTGGAAGACC
tgaacctcccccctgcaATCGTCGTGTGTGACACGGTTCGAGAAAAAGAT
GGCCTTGCTATGAGCAGCCGCAACGCATACCTGAGCCAGCATGAGCGCAG
TGCTGCCCCTGTTGTGTATAAGTCTCTTCGAGCCGCTGAACAGGCGTTTT
GCAACTCAGAAACCAGCATCTCGGCGGCAGAGCTGCGAAAGATTGTCCGA
GATGTTCTTGCACGAGAGGAGCTGATTCATACCGTTGAATACGTTTCAGT
TGCGCGGAAAGACACAATGGAAGAATTGGAGGATATTGTGCAGCCAAATG
AAGGAGCTGTTATATCACTTGCTGTACGTCTTGGTAAAGTACGACTAATT
GACAATGTTATCATATGAATGTATACACCTTCTCATCGCTGTTACGTTGT
GCCCGAGGGATTTGAGCATTTAGCAGAGGGAAAGTCGCGGCCTGGCCATT
TCAAGGGCGTCGCCACAATTGTAACGAAGCTTTTTGGCATCGTGCAACCG
ACAAAAGCATATTTCGGCCAAAAAGACGCAATGCAGTGTGTCCTGATGCG
ACGGTTGGTGGAAGACCtgaacctcccccctgcaATCGTCGTGTGTGACA
CGGTTCGAGAAAAAGATGGCCTTGCTATGAGCAGCCGCAACGCATACCTG
AGCCAGCATGAGCGCAGTGCTGCCCCTGTTGTGTATAAGTCTCTTCGAGC
CGCTGAACAGGCGTTTTGCAACTCAGAAACCAGCATCTCGGCGGCAGAGC
TGCGAAAGATTGTCCGAGATGTTCTTGCACGAGAGGAGCTGATTCATACC
GTTGAATACGTTTCAGTTGCGCGGAAAGACACAATGGAAGAATTGGAGGA
TATTGTGCAGCCAAATGAAGGAGCTGTTATATCACTTGCTGTACGTCTTG
GTAAAGTACGACTAATTGACAATGTTATCATATGA

Synonyms

Publications