EWM29713.1, cds958 (CDS) Nannochloropsis gaditana

Overview
NameEWM29713.1
Unique Namecds958
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:833279..833416 +
Alignment locationCM002456.1:833626..833722 +
Alignment locationCM002456.1:833845..833900 +
Alignment locationCM002456.1:833970..834092 +
Alignment locationCM002456.1:834182..834334 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29713.1
Productpantoate--beta-alanine ligase
Orig transcript idgnl|cribi|Naga_100124g6.8334.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:833279..833416 +
CM002456.1supercontigCM002456.1:833626..833722 +
CM002456.1supercontigCM002456.1:833845..833900 +
CM002456.1supercontigCM002456.1:833970..834092 +
CM002456.1supercontigCM002456.1:834182..834334 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0015940pantothenate biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004592pantoate-beta-alanine ligase activity
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
IPR003721Pantoate_ligase
Homology
BLAST of EWM29713.1 vs. NCBI_GenBank
Match: gi|585112291|gb|EWM29713.1| (pantoate--beta-alanine ligase [Nannochloropsis gaditana])

HSP 1 Score: 387.111 bits (993), Expect = 3.608e-136
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query:    1 MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAAEQAFCNSETSISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII 188
            MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAAEQAFCNSETSISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII
Sbjct:    1 MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAAEQAFCNSETSISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII 188          
BLAST of EWM29713.1 vs. NCBI_GenBank
Match: gi|1210522233|dbj|GAX18995.1| (pantoate--beta-alanine ligase [Fistulifera solaris])

HSP 1 Score: 230.335 bits (586), Expect = 8.393e-73
Identity = 114/188 (60.64%), Postives = 140/188 (74.47%), Query Frame = 0
Query:    1 MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAAEQAFCNSETSISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII 188
            MY   H  YV PEGF+  +EGKSRPGHF+GVATIVTKLF IVQPT AYFGQKDA QCVL+RR+V+DLN+   ++V DTVRE DGLAMSSRN YL+  ER AAP+VY+SL AA      SE+++ +A +R+ V  VL  E LI  ++YVS+  K TM+ LE  V   +GA+ISLA +LG VRLIDN+II
Sbjct:  102 MYGKDHVTYVDPEGFDDTSEGKSRPGHFRGVATIVTKLFNIVQPTNAYFGQKDAAQCVLIRRIVDDLNMDVNVIVADTVRESDGLAMSSRNTYLTPTERRAAPIVYQSLCAARTLVLASESAVESAVVRETVESVLRSEPLISEIQYVSIDNKSTMQSLEQ-VNREDGALISLACKLGSVRLIDNIII 288          
BLAST of EWM29713.1 vs. NCBI_GenBank
Match: gi|1210525877|dbj|GAX15483.1| (pantoate--beta-alanine ligase [Fistulifera solaris])

HSP 1 Score: 226.483 bits (576), Expect = 1.153e-71
Identity = 112/188 (59.57%), Postives = 138/188 (73.40%), Query Frame = 0
Query:    1 MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAAEQAFCNSETSISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII 188
            MY   H  YV PEGF+  +EGK+RPGHF+GVATIVTKLF IVQPT AYFGQKDA QCVL+RR+V+DLN+   ++V +TVRE DGLAMSSRN YL+  ER AAP+VY+SL AA      S  ++ +A +RK V  VL  E LI  ++YVS+  K TM+ LE  V   +GA+ISLA +LG VRLIDN+II
Sbjct:   69 MYGKDHVTYVDPEGFDDTSEGKARPGHFRGVATIVTKLFNIVQPTNAYFGQKDAAQCVLIRRIVDDLNMDVNVIVAETVRESDGLAMSSRNTYLTPTERHAAPIVYQSLCAARTLVLASNVAVESAVVRKTVESVLRSEPLISAIQYVSIDNKSTMQSLEQ-VNREDGALISLACKLGSVRLIDNIII 255          
BLAST of EWM29713.1 vs. NCBI_GenBank
Match: gi|299117153|emb|CBN75117.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 216.853 bits (551), Expect = 1.199e-66
Identity = 111/191 (58.12%), Postives = 141/191 (73.82%), Query Frame = 0
Query:    1 MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAAEQAF---CNSETSISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII 188
            MY+P HR YV P GF+ L EG +RPG F+GVAT+VTKL  +VQP  A+FGQKDA+QCVL++RLVEDLN+P  +VV +T RE DGLAMSSRNAY+S  ER+AAP VY SLRAA  A     ++  + S  EL     +V++ + LI +V+Y+SV    TMEELE+I Q   GAV+S+AVRLG VRLIDNV++
Sbjct:  158 MYSPDHRIYVDPLGFDDLPEGVARPGFFRGVATVVTKLLNVVQPDLAFFGQKDALQCVLVKRLVEDLNMPVTVVVSETTREADGLAMSSRNAYMSAEERAAAPAVYLSLRAAADARQREADAGRNASREELVAAAEEVISAQPLITSVDYLSVGSPATMEELEEIGQ--AGAVVSVAVRLGSVRLIDNVVL 346          
BLAST of EWM29713.1 vs. NCBI_GenBank
Match: gi|695401061|ref|XP_009522673.1| (Pantoate-beta alanine ligase [Phytophthora sojae] >gi|348680140|gb|EGZ19956.1| Pantoate-beta alanine ligase [Phytophthora sojae])

HSP 1 Score: 210.305 bits (534), Expect = 5.337e-65
Identity = 103/192 (53.65%), Postives = 141/192 (73.44%), Query Frame = 0
Query:    1 MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAA----EQAFCNSETSISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII 188
            MY+P HRCYV PEGF+ L EG+ R GHF+GVAT+V+KLF IVQPT A+FGQKDA Q VL++R+V DLN+P  I V   VRE DGLA+S+RN YLS  ER AA V+++ L  A    +QA  N +T++ AA LR +VR+   RE L+  ++Y+SV  K+TM+E+ + V   +G +IS+AV+LG+ RLIDN+++
Sbjct:   97 MYSPHHRCYVDPEGFDDLVEGQCREGHFRGVATVVSKLFNIVQPTHAFFGQKDAAQVVLIKRMVSDLNIPVEINVVPIVREADGLALSTRNQYLSPVEREAAAVLHRGLAHAQDLFQQAKQNGKTTVDAAALRDVVRNEYEREPLVTAIDYISVGSKETMQEVAE-VDTTKGVIISVAVKLGQCRLIDNIVL 287          
BLAST of EWM29713.1 vs. NCBI_GenBank
Match: gi|224008352|ref|XP_002293135.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220971261|gb|EED89596.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 207.608 bits (527), Expect = 3.864e-64
Identity = 109/192 (56.77%), Postives = 137/192 (71.35%), Query Frame = 0
Query:    1 MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAAEQAF----CNSETSISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII 188
            MY  +H  YV P GF+   EG SRPGHF+GVATIVTKLF IVQPT AYFGQKDA+QCVL+RR+ EDL++   + + DTVRE+DGLAMSSRNAYLS  ER  A VVYKSL AA + +          ++A +LR++VR VL  E LI  V+YV+V   +TM+ +E +   N+G VISLA  LG VRLIDN+++
Sbjct:   75 MYGKNHVTYVEPMGFDKTTEGISRPGHFRGVATIVTKLFNIVQPTNAYFGQKDAVQCVLIRRIAEDLDMDVNVQIMDTVREEDGLAMSSRNAYLSDEEREKAHVVYKSLCAAREVYESRLARGMEEVTADDLREVVRAVLETEPLITEVQYVAVDDLETMQPVERV--GNDGCVISLACILGPVRLIDNIVL 264          
BLAST of EWM29713.1 vs. NCBI_GenBank
Match: gi|301106432|ref|XP_002902299.1| (pantoate beta-alanine ligase, putative [Phytophthora infestans T30-4] >gi|262098919|gb|EEY56971.1| pantoate beta-alanine ligase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 207.994 bits (528), Expect = 5.183e-64
Identity = 103/192 (53.65%), Postives = 139/192 (72.40%), Query Frame = 0
Query:    1 MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAAEQAFC----NSETSISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII 188
            MY+P H CYV PEGF+ L EG+ R GHF+GVAT+VTKLF IVQPT A+FGQKDA Q VL++R+V DLN+P  I V   VRE DGLA+S+RN YLS  ER  A V+++ L  A+  F     + +++I+AA LR +VR    R+ L++ ++YVSV  K TM+EL + V   EGA+IS+AV+LG+ RLIDN+++
Sbjct:   97 MYSPHHSCYVDPEGFDDLVEGRCRKGHFRGVATVVTKLFNIVQPTHAFFGQKDAAQVVLIKRMVSDLNIPVQINVVPIVREADGLALSTRNQYLSPVEREVASVLHRGLGHAQDLFQKAKKDGKSTINAAALRDVVRQEYERQPLVNAIDYVSVGSKQTMQELSE-VDTIEGAIISVAVKLGQCRLIDNIVL 287          
BLAST of EWM29713.1 vs. NCBI_GenBank
Match: gi|1173959610|gb|OQS05825.1| (pantoate beta-alanine ligase [Thraustotheca clavata])

HSP 1 Score: 207.994 bits (528), Expect = 6.841e-64
Identity = 100/187 (53.48%), Postives = 137/187 (73.26%), Query Frame = 0
Query:    1 MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAAEQAFCNSET-SISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNV 186
            MY P HR YV P GF+ + EGK RPG F+GVAT+VTKLF IV PT A+FGQKDA+QCV+++R++EDLN P  + V  T RE++GLAMS+RN YLS  ER+A+ V+Y  L++A+  F N+ T SI AA LR  +  +   E L++ ++Y+S+A K+TM+EL D V    GA+IS+AV++G  RLIDN+
Sbjct:  116 MYLPEHRVYVDPVGFDDVPEGKCRPGFFRGVATVVTKLFNIVAPTHAFFGQKDAVQCVVIKRIIEDLNFPIELKVLKTKREENGLAMSTRNQYLSPAERTASAVIYAGLKSAQDLFKNATTSSIPAATLRDNIESIYRSEPLLNDIQYISIASKETMDELTD-VDTTAGAIISVAVKVGNCRLIDNI 301          
BLAST of EWM29713.1 vs. NCBI_GenBank
Match: gi|1173944218|gb|OQR92979.1| (pantoate beta-alanine ligase [Achlya hypogyna])

HSP 1 Score: 207.223 bits (526), Expect = 2.037e-63
Identity = 104/189 (55.03%), Postives = 133/189 (70.37%), Query Frame = 0
Query:    1 MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAAEQAF-CNSETSISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII 188
            MY P HR YV P GF+ + EG  RPG F+GVAT+V KLF IV PT A+FGQKDA+QCV+++RL+EDLN P  + V DT RE DGLAMS+RN YLS  ERSAA V+Y  LR A+  F      +I AA LR  +  +   E L+  ++Y+SV  K+TMEEL++ V  N GAVIS+AV +GK RLIDN+++
Sbjct:  121 MYLPDHRTYVDPTGFDDVPEGTCRPGFFRGVATVVAKLFNIVAPTHAFFGQKDAVQCVVIKRLIEDLNFPIDLRVLDTKREADGLAMSTRNQYLSPSERSAAKVLYAGLRQAKIDFDAAPGPTIPAAVLRATIETIYRAEPLVGEIQYISVGSKETMEELDE-VDTNAGAVISVAVTVGKCRLIDNIVL 308          
BLAST of EWM29713.1 vs. NCBI_GenBank
Match: gi|970653294|gb|KUF91793.1| (hypothetical protein AM588_10007212 [Phytophthora nicotianae] >gi|970659978|gb|KUF97572.1| Pantothenate synthetase [Phytophthora nicotianae])

HSP 1 Score: 204.142 bits (518), Expect = 5.764e-63
Identity = 102/192 (53.12%), Postives = 135/192 (70.31%), Query Frame = 0
Query:    1 MYTPSHRCYVVPEGFEHLAEGKSRPGHFKGVATIVTKLFGIVQPTKAYFGQKDAMQCVLMRRLVEDLNLPPAIVVCDTVREKDGLAMSSRNAYLSQHERSAAPVVYKSLRAAEQAFC----NSETSISAAELRKIVRDVLAREELIHTVEYVSVARKDTMEELEDIVQPNEGAVISLAVRLGKVRLIDNVII 188
            MY+P H CYV PEGF+ L EG+ R GHF+GVAT+VTKLF IVQPT A+FGQKDA Q VL++R+V DLN+P  I V   VRE DGLA+S+RN YLS  ER AA V+++ L  A+  F     + ++ + A  LR  VR+   RE L+  +EYVSV  K TM+E+   V   EGA++S+AV+LG+ RLIDN+++
Sbjct:   69 MYSPYHSCYVDPEGFDDLVEGQCRKGHFRGVATVVTKLFNIVQPTHAFFGQKDAAQVVLIKRMVSDLNIPVQIEVMPIVREADGLALSTRNQYLSSVERKAASVLHRGLVHAQDLFQKAKKDGKSIVDAVSLRDAVREEYEREPLVTAIEYVSVGSKQTMQEMS-AVDTAEGAIVSVAVKLGQCRLIDNIVL 259          
The following BLAST results are available for this feature:
BLAST of EWM29713.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112291|gb|EWM29713.1|3.608e-136100.00pantoate--beta-alanine ligase [Nannochloropsis gad... [more]
gi|1210522233|dbj|GAX18995.1|8.393e-7360.64pantoate--beta-alanine ligase [Fistulifera solaris... [more]
gi|1210525877|dbj|GAX15483.1|1.153e-7159.57pantoate--beta-alanine ligase [Fistulifera solaris... [more]
gi|299117153|emb|CBN75117.1|1.199e-6658.12conserved unknown protein [Ectocarpus siliculosus][more]
gi|695401061|ref|XP_009522673.1|5.337e-6553.65Pantoate-beta alanine ligase [Phytophthora sojae] ... [more]
gi|224008352|ref|XP_002293135.1|3.864e-6456.77predicted protein, partial [Thalassiosira pseudona... [more]
gi|301106432|ref|XP_002902299.1|5.183e-6453.65pantoate beta-alanine ligase, putative [Phytophtho... [more]
gi|1173959610|gb|OQS05825.1|6.841e-6453.48pantoate beta-alanine ligase [Thraustotheca clavat... [more]
gi|1173944218|gb|OQR92979.1|2.037e-6355.03pantoate beta-alanine ligase [Achlya hypogyna][more]
gi|970653294|gb|KUF91793.1|5.764e-6353.13hypothetical protein AM588_10007212 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna958rna958Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications