rna9579, rna9579 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9579
Unique Name	rna9579
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2191
Alignment location	KK037254.1:215969..217936 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100041g18.3700.mrna
Orig protein id	gnl\|cribi\|Naga_100041g18.3700
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:215969..217936 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g18	gene9298	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9579	rna9579-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21130.1	cds9548	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:215969..217936+
coding sequence from alignment at KK037254.1:215969..217936+

mRNA sequence

>rna9579 ID=rna9579|Name=rna9579|organism=Nannochloropsis gaditana|type=mRNA|length=2191bp
CGCACCAATGCGACCTACTCGGGATTCGCGGTTGGAAGGAAGAGGCAAGG
CTGAGAAAGGAGGGCGGGGGCAAGATCGAAGTCGCGTGCCTCGTGAACTA
GAGGCTCCCAGGCGAAAGAAGAGCGAGGAGCGGCCTGCACACCCCTGCCT
TCCGGCACTGTCTGCGAAGGGGGCTACGAAATGACTCACAGAGGAGATCA
TTTGATACGTAGCAACTGATGTGCCAGGCAAACAGTGAAGCATACAGGGA
TGGGGCACAAGGTCGCGGTCAGGGATCTGAACAAGCGGATGGGGGGATGA
ACTCGCTCCTCAGCCCCTCCTCAGCACCAGAATTTGATGCTCCATCTGCA
GCATAGAGGCCGTGGTTATTACTCATTCCTTGCCTACTTCCATGGGAAGT
AAACATTGAGCGACCGTGCTGATCATTTATCCTTGCTGGACAAGGAGGGA
GAGGTCGCAAAAGTTCCTTTCCCCGACTTACACACCCTTGCGCTTCAACC
CGCATTTGCGCGCAAACCGACCCATACACGCCACAGATTTGAGCATCCCT
ACGACGAATATTAGCAGAGCACCATTCACAACCAAAGCACGCTGCGGTGA
TAAACCCGCACCAGGCATGGCGGCCGGAGTGGATGGGATCGTGGCTGGCC
CCGGCGTCACGCCTTTGCAGAGGGGGTTTACCTTTTATTACACGGACAAG
CACAAGGCTGCTGCAGAGACCAATGGAAACTCTGTCGAGCGCGTCGCCTC
TTTTCGAACGGCTGAGGGCTTTTGGCGCGTTTACAATCACATGCTGCGGC
CACATCAGCTGCGAGAAGGCGAAGGAAGGGAGTACCAACTGTTCGTGGAG
GGAGTGAAGCCCAGCGGCGAGGACCCATCCAATTCGAAGGGAGGGCGGCT
GAGCGTCCGGTGCCCGCCAGGCCTCACGTCCCGCTACTGGGAGGAGCTGG
TCATCGCCTTTGTCGGCGAGCAGATCGACGGTGGGGAGGACGAAGTCTGT
GGCGTTATCGTCTCCCCGCGGTCGTCCGGGGACGTGATCTCCATCTGGAA
CCGGCATGCGGGCAACCGGGACTTCCAGGTGAAGCTTGTCAGGCGCCTCA
AGGCCCTCTGGGAGCTGCCACCATTTGTGCCCATGGACTACGCGCGACAC
CGCCCGGAGTCTGGTCAAGGTGGGGGGGGGGGAACGGAAGGGGGAGGAGA
GCGCAAAGGTGCGTGGCGGGCAGCGCGCGTGTTCGGAGCGGGAGGAGGGG
GTGGGGCGCATGGAGGGAGGGAGGGCGGTTATTCCAAGAATTTGGGGCGA
GACCGAGGAGAGCGCGGAATGTTTGAGCGAGGGGAGAGGAGTGCAGAGGG
GGGTGGGCGGCGGGAGGCGTGGCTATCGAGGGAGCGGGCTGGCTCGGCGG
ACAAGGGAGAGTGGAGGAGTCGAGGTGAGGCTTGGTAGCGGGGTGAGAAC
CTTTTGGAAAAATGGGCGGGTATGAGAATGGAAGAGGGAAGCTACTAGTT
CTAGTATTGAATAGACGCTGCTCCAGCTAGCCGTCGGCCGCATAATCATG
CATGGCCCTCAGGCCCGTTTCATAGCAGCAAGAATAGGGTGCAGGGAGGG
GGGCGGACGGGAAGCACGCAAGTGCCCCTCCTCCTCCTCACTCCCATGCC
TCTCTCGGAGATCCTGGACTGCCACCCCCTCGGATTCCTTTCAAAACGGA
AGGGCGGTGACCAGGGCGGGGCCGGACTGACGAGAGGATATTATTCAGAG
CGTTTGCTGCCGACACAGTAAGCGACCCGTCTGAAGTGCGCCCGTCTCAC
GCTTCTTCTCCCCTCTCACATCCCTTACCGCCGCCACCGCAGGCAACTCG
ACCGGGCAACATCACGCGCCCTCCGAGGGCAAGACAGACGCCGAGGGCTG
GGAGGTGGTGCGTGAGAGGAGGCCGTCTCGATGAGGCGCCCGGGGGCACA
GCAATCTCGGTAGGGGAAAGAAAGAAGGGAGGAACTGCTGCTTATGGTCT
GAGACTCTCAAGACAGGAAGGTGTGGGAGGGCAGCTGTGTACAGCCATGA
TCGTGTGGAGGCCAAGGCGTGGGTGGGGGTGGCTGAGTAAAGGAGCAGGG
AGGGGAATGACGGGAAGCTCCCTCAGATGGGGAGGGGGGGGAAAGCGTGT
CTACAGTAGGTGAACAAAGAATCAACGGCTTCGGACGTAAG

protein sequence of rna9579

>rna9579-protein ID=rna9579-protein|Name=rna9579|organism=Nannochloropsis gaditana|type=polypeptide|length=587bp
MSLLQKQGRRLGGKALRATRDAASSASPLARPWCRLPSDLTTTRSQVAAT
IFAVLLAVLKMESVGAWRVLPIGIPSGVSKMGSRVGHPTPLFTSPPQNVL
PDPPLQEDSSASEITPSPVVQSFSPFLGRQRRRPGLLFEEEIDFCLAAPS
LEGVSVGNSRVEIAKVVNTFVNQAAKKILIGFDCCFGEVADGVKDRLRTD
FLSGDEASAEDRTCVEGACAFIDAVVALSPCSDLEVNATKGALVPPYTQA
YARVLDTLLSNDCELRHSDSSALSTTASTDPPSPPLKVRPRDRDICLSLY
DTITGAPTKTKVLNTISNRVSRTMLYADEDDVAKLTNELTKGKPGFLEKW
VGGEEGCDEAVYYGALIAYLTGGLEAPAPAAMGGGYSNAYQRFTTSLVQE
LGTRSASVDPEMFDAFVRWESTLRKNLTQDMWDRHPKELTGQWTLVDSGP
NPAGATTLPGPGAETGKGEQRSANLVFRRDGTLRVPPELGMDGTWSFEPG
PTHLDTIRFELRQGTPDNRVLCYTGYVDRGQRIETRFSKRPIKMKGRVVL
RARGEARSSGKFSMQLCKKNTLLENLVVGSTRGSVQE

mRNA from alignment at KK037254.1:215969..217936+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9579 ID=rna9579|Name=rna9579|organism=Nannochloropsis gaditana|type=mRNA|length=1968bp|location=Sequence derived from alignment at KK037254.1:215969..217936+ (Nannochloropsis gaditana)
ATGTCACTCCTACAAAAACAAGGGAGAAGACTAGGAGGTAAAGCTTTGAG
GGCAACCAGAGACGCGGCCAGCtcagcctcccccctcgcacGACCATGGT
GCCGACTGCCATCTGACTTGACAACAACGCGGAGCCAGGTAGCGGCGACG
ATTTTTGCAGTGCTCCTCGCCGTATTGAAGATGGAAAGTGTGGGTGCGTG
GCGCGTTTTACCCATCGGCATCCCCTCAGGGGTATCCAAAATGGGGAGCC
GTGTCGGGCATCCCACTCCGCTTttcacctctcctccccaaaACGTCTTA
CCGGACCCCCCACTGCAAGAGGATAGCAGCGCCAGCGAGATCACTCCCTC
ACCGGTGGTACAGAGTTTCAGTCCCTTCTTGGGCCGGCAGAGGAGAAGAC
CTGGCCTGCTTTTTGAAGAGGAGATCGACTTCTGCCTAGCTGCTCCCTCG
CTGGAAGGGGTAAGCGTGGGCAATAGCAGAGTGGAGATCGCGAAAGTGGT
GAACACTTTTGTAAACCAAGCTGCTAAAAAAATTTTGATTGGGTTCGATT
GCTGCTTCGGAGAGGTGGCAGACGGAGTGAAGGACCGCCTGCGAACTGAC
TTCCTGTCGGGGGACGAAGCATCCGCAGAGGACAGGACCTGCGTAGAAGG
GGCCTGCGCTTTCATTGATGCGGTGCGTGGTGCTCAGactggagaggggg
gggcgcgaggCAATGGGAATGGGCTCAGACAGCCTGCCACGCCCGATGTC
TCGGGTGCTGGCCGGGCTCCCTCTGTGCGAGGAGCCACTGGTTCCTTTCT
CCTGACTCCTATCCCAcgcaccctctctcccaccttctGCACCTCCCTGA
CTCACCATccgtccttctttctccaggTGGTGGCCCTCTCCCCGTGCTCG
GACCTGGAGGTGAACGCCACCAAGGGGGCCCTCGTTCCCCCCTACACCCA
GGCCTACGCCCGCGTACTCGACACGCTCCTAAGCAACGACTGCGAGCTTC
GGCACTCGGACTCCAGCGCCCTTTCTACCACTGCTTCTAccgaccctcct
tccccccccctcaaaGTTCGCCCGCGCGACCGGGACATATGCCTGTCCCT
GTACGACACCATCACCGGCGCCCCGACCAAGACCAAGGTGCTTAACACCA
TCTCCAACCGGGTCTCTCGCACCATGCTTTacgcggacgaggacgacgtg
gcAAAGCTCACGAATGAGCTGACCAAAGGAAAGCCGGGCTTCCTGGAGAA
GtgggtgggcggggaagagggctgCGACGAGGCCGTCTACTACGGGGCGC
TGATCGCCTACCTCACGGGCGGATTGGAGGctcccgcgcccgccgccaTG
GGCGGAGGCTACAGCAACGCCTATCAGCGCTTCACCACCTCGCTCGTCCA
GGAGCTGGGTACACGGTCTGCCTCGGTGGATCCGGAGATGTTCGACGCCT
TCGTGCGCTGGGAGAGCACCCTGCGGAAGAACCTGACTCAGGACATGTGG
GACCGGCACCCGAAGGAACTGACTGGCCAGTGGACGCTGGTGGATTCGGG
GCCCAACCCCGCAGGCGCCACgaccctcccaggccccgggGCGGAGACTG
GCAAGGGGGAACAGCGGTCGGCGAACCTGGTCTTTCGGAGGGACGGCACA
CTGCGGGTGCCGCCTGAGTTGGGGATGGACGGAACGTGGAGCTTTGAGCC
GGGCCCAACCCACCTGGACACCATTCGGTTCGAGCTGCGGCAAGGGACGC
CCGACAACCGAGTCTTGTGCTACACGGGGTACGTGGACCGGGGCCAGCGG
ATCGAAACGCGCTTCTCGAAGCGACCCATCAAAATGAAAGGGCGGGTGGT
GTTGCGCGCGCGAGGTGAGGCGAGGTCAAGTGGCAAGTTTTCCATGCAGC
TGTGTAAGAAGAACACGCTTCTGGAGAACTTGGTGGTGGGTTCGACGAGA
GGCTCGGTGCAAGAGTAA

Coding sequence (CDS) from alignment at KK037254.1:215969..217936+

>rna9579 ID=rna9579|Name=rna9579|organism=Nannochloropsis gaditana|type=CDS|length=3528bp|location=Sequence derived from alignment at KK037254.1:215969..217936+ (Nannochloropsis gaditana)
ATGTCACTCCTACAAAAACAAGGGAGAAGACTAGGAGGTAAAGCTTTGAG
GGCAACCAGAGACGCGGCCAGCtcagcctcccccctcgcacGACCATGGT
GCCGACTGCCATCTGACTTGACAACAACGCGGAGCCAGGTAGCGGCGACG
ATTTTTGCAGTGCTCCTCGCCGTATTGAAGATGGAAAGTGTGGGTGCGTG
GCGCGTTTTACCCATCGGCATCCCCTCAGGGGTATCCAAAATGGGGAGCC
GTGTCGGGCATCCCACTCCGCTTttcacctctcctccccaaaACGTCTTA
CCGGACCCCCCACTGCAAGAGGATAGCAGCGCCAGCGAGATCACTCCCTC
ACCGGTGGTACAGAGTTTCAGTCCCTTCTTGGGCCGGCAGAGGAGAAGAC
CTGGCCTGCTTTTTGAAGAGGAGATCGACTTCTGCCTAGCTGCTCCCTCG
CTGGAAGGGGTAAGCGTGGGCAATAGCAGAGTGGAGATCGCGAAAGTGGT
GAACACTTTTGTAAACCAAGCTGCTAAAAAAATTTTGATTGGGTTCGATT
GCTGCTTCGGAGAGGTGGCAGACGGAGTGAAGGACCGCCTGCGAACTGAC
TTCCTGTCGGGGGACGAAGCATCCGCAGAGGACAGGACCTGCGTAGAAGG
GGCCTGCGCTTTCATTGATGCGgTGGTGGCCCTCTCCCCGTGCTCGGACC
TGGAGGTGAACGCCACCAAGGGGGCCCTCGTTCCCCCCTACACCCAGGCC
TACGCCCGCGTACTCGACACGCTCCTAAGCAACGACTGCGAGCTTCGGCA
CTCGGACTCCAGCGCCCTTTCTACCACTGCTTCTAccgaccctccttccc
cccccctcaaaGTTCGCCCGCGCGACCGGGACATATGCCTGTCCCTGTAC
GACACCATCACCGGCGCCCCGACCAAGACCAAGGTGCTTAACACCATCTC
CAACCGGGTCTCTCGCACCATGCTTTacgcggacgaggacgacgtggcAA
AGCTCACGAATGAGCTGACCAAAGGAAAGCCGGGCTTCCTGGAGAAGtgg
gtgggcggggaagagggctgCGACGAGGCCGTCTACTACGGGGCGCTGAT
CGCCTACCTCACGGGCGGATTGGAGGctcccgcgcccgccgccaTGGGCG
GAGGCTACAGCAACGCCTATCAGCGCTTCACCACCTCGCTCGTCCAGGAG
CTGGGTACACGGTCTGCCTCGGTGGATCCGGAGATGTTCGACGCCTTCGT
GCGCTGGGAGAGCACCCTGCGGAAGAACCTGACTCAGGACATGTGGGACC
GGCACCCGAAGGAACTGACTGGCCAGTGGACGCTGGTGGATTCGGGGCCC
AACCCCGCAGGCGCCACgaccctcccaggccccgggGCGGAGACTGGCAA
GGGGGAACAGCGGTCGGCGAACCTGGTCTTTCGGAGGGACGGCACACTGC
GGGTGCCGCCTGAGTTGGGGATGGACGGAACGTGGAGCTTTGAGCCGGGC
CCAACCCACCTGGACACCATTCGGTTCGAGCTGCGGCAAGGGACGCCCGA
CAACCGAGTCTTGTGCTACACGGGGTACGTGGACCGGGGCCAGCGGATCG
AAACGCGCTTCTCGAAGCGACCCATCAAAATGAAAGGGCGGGTGGTGTTG
CGCGCGCGAGGTGAGGCGAGGTCAAGTGGCAAGTTTTCCATGCAGCTGTG
TAAGAAGAACACGCTTCTGGAGAACTTGGTGGTGGGTTCGACGAGAGGCT
CGGTGCAAGAGTAAATGTCACTCCTACAAAAACAAGGGAGAAGACTAGGA
GGTAAAGCTTTGAGGGCAACCAGAGACGCGGCCAGCtcagcctcccccct
cgcacGACCATGGTGCCGACTGCCATCTGACTTGACAACAACGCGGAGCC
AGGTAGCGGCGACGATTTTTGCAGTGCTCCTCGCCGTATTGAAGATGGAA
AGTGTGGGTGCGTGGCGCGTTTTACCCATCGGCATCCCCTCAGGGGTATC
CAAAATGGGGAGCCGTGTCGGGCATCCCACTCCGCTTttcacctctcctc
cccaaaACGTCTTACCGGACCCCCCACTGCAAGAGGATAGCAGCGCCAGC
GAGATCACTCCCTCACCGGTGGTACAGAGTTTCAGTCCCTTCTTGGGCCG
GCAGAGGAGAAGACCTGGCCTGCTTTTTGAAGAGGAGATCGACTTCTGCC
TAGCTGCTCCCTCGCTGGAAGGGGTAAGCGTGGGCAATAGCAGAGTGGAG
ATCGCGAAAGTGGTGAACACTTTTGTAAACCAAGCTGCTAAAAAAATTTT
GATTGGGTTCGATTGCTGCTTCGGAGAGGTGGCAGACGGAGTGAAGGACC
GCCTGCGAACTGACTTCCTGTCGGGGGACGAAGCATCCGCAGAGGACAGG
ACCTGCGTAGAAGGGGCCTGCGCTTTCATTGATGCGgTGGTGGCCCTCTC
CCCGTGCTCGGACCTGGAGGTGAACGCCACCAAGGGGGCCCTCGTTCCCC
CCTACACCCAGGCCTACGCCCGCGTACTCGACACGCTCCTAAGCAACGAC
TGCGAGCTTCGGCACTCGGACTCCAGCGCCCTTTCTACCACTGCTTCTAc
cgaccctccttccccccccctcaaaGTTCGCCCGCGCGACCGGGACATAT
GCCTGTCCCTGTACGACACCATCACCGGCGCCCCGACCAAGACCAAGGTG
CTTAACACCATCTCCAACCGGGTCTCTCGCACCATGCTTTacgcggacga
ggacgacgtggcAAAGCTCACGAATGAGCTGACCAAAGGAAAGCCGGGCT
TCCTGGAGAAGtgggtgggcggggaagagggctgCGACGAGGCCGTCTAC
TACGGGGCGCTGATCGCCTACCTCACGGGCGGATTGGAGGctcccgcgcc
cgccgccaTGGGCGGAGGCTACAGCAACGCCTATCAGCGCTTCACCACCT
CGCTCGTCCAGGAGCTGGGTACACGGTCTGCCTCGGTGGATCCGGAGATG
TTCGACGCCTTCGTGCGCTGGGAGAGCACCCTGCGGAAGAACCTGACTCA
GGACATGTGGGACCGGCACCCGAAGGAACTGACTGGCCAGTGGACGCTGG
TGGATTCGGGGCCCAACCCCGCAGGCGCCACgaccctcccaggccccggg
GCGGAGACTGGCAAGGGGGAACAGCGGTCGGCGAACCTGGTCTTTCGGAG
GGACGGCACACTGCGGGTGCCGCCTGAGTTGGGGATGGACGGAACGTGGA
GCTTTGAGCCGGGCCCAACCCACCTGGACACCATTCGGTTCGAGCTGCGG
CAAGGGACGCCCGACAACCGAGTCTTGTGCTACACGGGGTACGTGGACCG
GGGCCAGCGGATCGAAACGCGCTTCTCGAAGCGACCCATCAAAATGAAAG
GGCGGGTGGTGTTGCGCGCGCGAGGTGAGGCGAGGTCAAGTGGCAAGTTT
TCCATGCAGCTGTGTAAGAAGAACACGCTTCTGGAGAACTTGGTGGTGGG
TTCGACGAGAGGCTCGGTGCAAGAGTAA

Synonyms

Publications