rna9576, rna9576 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9576
Unique Name	rna9576
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2739
Alignment location	KK037254.1:212259..213508 +

Link to JBrowse

Properties


Property Name	Value
Product	cleavage stimulation factor subunit 2
Orig transcript id	gnl\|cribi\|Naga_100041g16.3691.mrna
Orig protein id	gnl\|cribi\|Naga_100041g16.3691
Gene	CSTF64
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:212259..213508 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CSTF64	gene9296	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9576	rna9576-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21121.1	cds9545	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:212259..213508+
coding sequence from alignment at KK037254.1:212259..213508+

mRNA sequence

>rna9576 ID=rna9576|Name=rna9576|organism=Nannochloropsis gaditana|type=mRNA|length=2739bp
GCTTAGGATGGCCAAAACCGGGAATAAGGCCACCCGCAAAATGGCCAAAA
AGGGGTTGCTTGATTTCACTTCACGAGTGGGAAATAAGAAAGGCAAGGCT
AGTACGGCTGGTAAGTCAATCAAGGGCGTCAGCTTTCAACGCGATGGCGC
AGCCCGTTCCAGGGGTGGCAAACATGGGAAGGTCCGTCGACCACAACCCA
AGGCCGGCCGGCATGGCGGCCGGCCAGAGGATAAAGCTGAGATAAAAGGC
GACGATGCCGAGAAAGTCGCATCGCAGAATGATGAATACAGGGGGATAGA
GGAGATGGACGTCGATGCGTTCATGAAGAGCGGAATGTTTGGGGGTGAAG
GGGAGGAGAGCGCGGATGAGGAGGCGGACCTCGGGGAGGAAGCTGAGGAC
TGTGAGGATGAACACGACGAGCGAAAGGAAGACGAGACGGAGGATATTGC
AGGAGAGGACGATGGGGCGGAAGATGGTGATGAGATGGAGGAAGACTACG
GAGACGAGGAGGAACAACTGTTGGAGAGTGAGGTCCAAGCGCACAAAGCG
GAGCTTGAGCGTTTGAAGGCTAAAGACCCTGAATTCTTCAGATTTTTGGA
GAAGAATGACGGTAATTTACTTTCTTTCGGTAAAGACGAGGACGGCGAGG
AGGATGATGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGATCTGGATGCGGGGGAGGAAGCGCCGAGCCCGGCACGAGAGGGAGG
CGCGCAAGAGCTGACTCTAGCTTTGTTGAAGGCGATCGAGCACTCGGCCT
TCGAGCAGCACTCCCTGAAGGCCCTACGGAGACTGGTGCTCGCCTTCAAG
GCCGCCAGCCACATGGCGGACGAGAGCAGTCGCCAGGCGCCCGGGGAGCA
GGCCTTCAGCATCGCCTCCTCCAGCGTCTTCGACCGGCTCTTGGTCACCT
GCCTGACCCGCCTGCCCGACGCCTTCGGCCACCACCTCTTCCAGAACCCC
CAGTACAGCGCCCTCGACCCCGCACCCTTCGCCAAGCTCCAAGGCCTCCC
GGCCTTCCGCTCCCTCCGGCCCGCGCTCTACCGGAGCCTCAAGGCCCTCC
ACTACCTCCTCGGGCAGATCACCGAGCCCTCCCTCCTCACCTTCACGCTC
TCTCGGCTCGAGCGTTTCCTCCCCTTCCTCGTCCTCTTTCCCCGCCTCGC
CAAGTTCTATCTGAGGACGCTTCTGTCCTTGTGGGCCGCCTCGGAGGCAC
TGGACGTGAAGCTGGTCGCCTTCCTGCGCGTGCGCCAGGCGGCGACCGTC
CTCCCCTTCCCCTTCCTCGAGCACTGCCTCAAGGGTGCCTACCTGTCGTA
CGCCCGCAACGCCAAGTTCGTAAGCGAGGCATCTCTGCCCGGGCTCACCC
TCATGGGCAACGGCCTCGTCGAGCTCTACGGCCTGGACCTGGCCAGCGCC
TACCAGCACGCCTTCGTCTACGTCCGGCAGCTCGCCCTCCACTTGCGCGC
CGCCTACACGAAGAAGACGCCCGAGGCGCTCCAGAAGGTGCAGTGCTGGC
AGTACCTCAACTGCTGCAAGGTCTGGGTGGCGGTGCTGACCGCCCACGTG
GCGCCAGACCCGGGGTCCGACAAGGCCCCCTCCCAGCTGCGAGAGCTCGT
CTTCCCCCTCGCCCAGATCCTCCTCGGGGCCGTCAGGCTCACCCCGTCCG
CTCGCCTGTACCCGCTTACCCTCCACTGCCTCACCCTCCTCCAGCGCCTG
GCCGCCCGCGCCCAGGTCTTCATCCCCTGCGCGGCCCCATGCCTGAGCAT
GCTGGAGGACCCCGCCCTCTCCAAGAAGCCGAAGCCGTCCACAGAGGCCC
CTCCCTCCCTCGCCCTTGCGCTCAAGTTGCCCGGCAAGGCAGGCCTGGAG
GCGAAGAACGTGCAGGAGGCGCTGGTGGATGGATGCATGGACGTGCTGAG
CCAGGAGATCCTCGTTTACCGATACGCGCTCGCTTTTCCCGAGTACGCCT
ATCCGATCAAGGACCGTCTGCGTCGCTTTGCCAAGACCACGAGGAATGCT
CGGTGGCGAGCGCTGGCGCGAGGGCTGGTGGAGGAGTGCGAGAAGCGCGG
GAGGTACGTGGAGAGGGAGCGGGCAAGGAAGGAGATGGCCCCCACGGATG
CGGCCAGCCTGGAGGCACTGCGGCCGCGGGGAGAAGGAAAGGGGGAGAAC
AAAGAAGAGCTGGATGCTGCGGGGAGACTCAAGGCGTTTCTGGACGCGAA
GGCTGCGAGGGAGGGGGTCGGGGTGGAAGTGCTGGAGGTGGGTGTCAAGA
AGGGCTCCTCGGGACCGTTGCATGGGAAGGAGGAGGCGGGGGAGAAGCGA
GGGCGGGAGAAGAAAAAGGGTGAGGCGGCGGAGTCAAAGACGGGTAGGGG
GGCGAATGGAAAGAAGGAGGGCAAGCTTGGGCAGCAGAGGCAGGAGGAAT
GGGAGAAGATACCTATAGAGCGCATGGAGGACGAGGTGGGGGCTTTGCAT
GAATGGAGTGAGGAGGAGCGAGAGTCGACCGGGGGGGACGCTGAAGAAGA
GGGGGAGGAAGAGGACGACGAGGACGACGAGGATGAGGATGAGGAGGACG
GGGACATGGAGGATGCCGAGGAGGAGGAAGACGATGAAGGAGATGAGGGC
GATGATGGTTCATCAGAGTAGGATGTGGTTGAAAGTGTAGTGGTCGTGAA
ATAACCAGACAGGGCAAAGTAAGTCTTTGAGCTGAAACG

protein sequence of rna9576

>rna9576-protein ID=rna9576-protein|Name=rna9576|organism=Nannochloropsis gaditana|type=polypeptide|length=338bp
MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPKKGYA
FVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILP
GGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIG
EAIIHMQVKIGMIRPLARAADQSHFPSQASTQQSQQHQQPLQPSLQPPTP
LGAFGGPQQQPGGGSYYQSLPPPLPPPQPGQWGLGGGTGGVLPPLPPPQT
LDQSSAGLAGLGALLGGGNQAASQELVKQIMELTPEQLAGLDPGRRQMLA
GAGKRLASYLAGQRQEARATECGHALGHPQKESLACAI

mRNA from alignment at KK037254.1:212259..213508+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9576 ID=rna9576|Name=rna9576|organism=Nannochloropsis gaditana|type=mRNA|length=1250bp|location=Sequence derived from alignment at KK037254.1:212259..213508+ (Nannochloropsis gaditana)
ATGTCCGGCGACTCCAAATGGCAAATATTTATCGGGAACGtaagcagcag
caccacgGACGAGAAGCTGCGCCAAGTTTTCTCGACGGCAGGGAATGTGG
TGAATGTGCGCGTAATGACAGACCGCGGAGACCCCAAAAAAGGTAAAGAC
CGAACACGATTCATCGCGACACGCGCCACTCTTTCCCTGCATGTCGTCCC
TGCCGCAACTGTTCTCTCGTAGCGCGAGTCGACCCGGCAGTTGGCGTGTT
GTTCTGAATTTCCCTTCCGACTCGACCACACATCAGGTTACGCCTTCGTG
GAATACGACAACCCGGACACAGCCTTGACCGCCATTCAGAACCTTGGCAA
TGTGGAGGTGGACGGGCGCCGACTTCGCGTGGGCTTCAGCAACAACAGCG
GGCTGGAGGCCATCGCCAAGCAGAGGGGCTTGACTATCTTGCCAGGCGGG
GGGGTGACGGGCAAGAGTCTGGACGGCGTCCTCACCcagttctccctccc
cgacatGTACGATATGATTGCGCATCTGAAAGACGTGGCGGAAAACAAAC
CCGATGAGCTACGCTTGCTGCTCATCTCACATCCGCAGATAGGGGAGGCG
ATCATTCACATGCAGGTGAAGATCGGGATGATCCGGCCCTTGGCCCGCGC
GGCCGACCAGTcacactttccctcccaggcgTCCACACAGCAGTCACAGC
AGCACCAACAGCcgctccagccctccctccagcctcccacccctctcggT
GCCTTTGGCGGGCCCCAGCAGCAGCCAGGAGGGGGATCCTACTACCAgtc
tctgccgccgccgcttccgcccccccAGCCAGGGCAGTGGGGATTGGGCG
GGGGCACGGGCGGTgtgctgcctcccctcccacccccgcaGACGCTGGAT
CAGTCCTCAGCCGGCCTGGCGGGTCTGGGCGCCCTGCTGGGTGGGGGGAA
TCAGGCGGCATCCCAGGAGTTGGTGAAACAGATCATGGAGCTCACGCCCG
AGCAGCTGGCGGGGTTGGATCCGGGGCGGCGGCAAATGTTGGTGGATTTG
CAGCAAGCGATTCTGACGCAGACGGGGGCCGCGAAATGAAGGGCGCCGAA
gcgaggcggcgaggggagagaggggcacaGGCAGGGGCCGGCAAGAGGCT
CGCCAGCTATCTAGCTGGACAGAGACAAGAGGCTCGGGCCACCGAATGTG
GACATGCTCTAGGGCACCCTCAAAAGGAATCTTTGGCTTGTGCGATATGA

Coding sequence (CDS) from alignment at KK037254.1:212259..213508+

>rna9576 ID=rna9576|Name=rna9576|organism=Nannochloropsis gaditana|type=CDS|length=3051bp|location=Sequence derived from alignment at KK037254.1:212259..213508+ (Nannochloropsis gaditana)
ATGTCCGGCGACTCCAAATGGCAAATATTTATCGGGAACGtaagcagcag
caccacgGACGAGAAGCTGCGCCAAGTTTTCTCGACGGCAGGGAATGTGG
TGAATGTGCGCGTAATGACAGACCGCGGAGACCCCAAAAAAGGTTACGCC
TTCGTGGAATACGACAACCCGGACACAGCCTTGACCGCCATTCAGAACCT
TGGCAATGTGGAGGTGGACGGGCGCCGACTTCGCGTGGGCTTCAGCAACA
ACAGCGGGCTGGAGGCCATCGCCAAGCAGAGGGGCTTGACTATCTTGCCA
GGCGGGGGGGTGACGGGCAAGAGTCTGGACGGCGTCCTCACCcagttctc
cctccccgacatGTACGATATGATTGCGCATCTGAAAGACGTGGCGGAAA
ACAAACCCGATGAGCTACGCTTGCTGCTCATCTCACATCCGCAGATAGGG
GAGGCGATCATTCACATGCAGGTGAAGATCGGGATGATCCGGCCCTTGGC
CCGCGCGGCCGACCAGTcacactttccctcccaggcgTCCACACAGCAGT
CACAGCAGCACCAACAGCcgctccagccctccctccagcctcccacccct
ctcggTGCCTTTGGCGGGCCCCAGCAGCAGCCAGGAGGGGGATCCTACTA
CCAgtctctgccgccgccgcttccgcccccccAGCCAGGGCAGTGGGGAT
TGGGCGGGGGCACGGGCGGTgtgctgcctcccctcccacccccgcaGACG
CTGGATCAGTCCTCAGCCGGCCTGGCGGGTCTGGGCGCCCTGCTGGGTGG
GGGGAATCAGGCGGCATCCCAGGAGTTGGTGAAACAGATCATGGAGCTCA
CGCCCGAGCAGCTGGCGGGGTTGGATCCGGGGCGGCGGCAAATGTTGGCA
GGGGCCGGCAAGAGGCTCGCCAGCTATCTAGCTGGACAGAGACAAGAGGC
TCGGGCCACCGAATGTGGACATGCTCTAGGGCACCCTCAAAAGGAATCTT
TGGCTTGTGCGATATGAATGTCCGGCGACTCCAAATGGCAAATATTTATC
GGGAACGtaagcagcagcaccacgGACGAGAAGCTGCGCCAAGTTTTCTC
GACGGCAGGGAATGTGGTGAATGTGCGCGTAATGACAGACCGCGGAGACC
CCAAAAAAGGTTACGCCTTCGTGGAATACGACAACCCGGACACAGCCTTG
ACCGCCATTCAGAACCTTGGCAATGTGGAGGTGGACGGGCGCCGACTTCG
CGTGGGCTTCAGCAACAACAGCGGGCTGGAGGCCATCGCCAAGCAGAGGG
GCTTGACTATCTTGCCAGGCGGGGGGGTGACGGGCAAGAGTCTGGACGGC
GTCCTCACCcagttctccctccccgacatGTACGATATGATTGCGCATCT
GAAAGACGTGGCGGAAAACAAACCCGATGAGCTACGCTTGCTGCTCATCT
CACATCCGCAGATAGGGGAGGCGATCATTCACATGCAGGTGAAGATCGGG
ATGATCCGGCCCTTGGCCCGCGCGGCCGACCAGTcacactttccctccca
ggcgTCCACACAGCAGTCACAGCAGCACCAACAGCcgctccagccctccc
tccagcctcccacccctctcggTGCCTTTGGCGGGCCCCAGCAGCAGCCA
GGAGGGGGATCCTACTACCAgtctctgccgccgccgcttccgcccccccA
GCCAGGGCAGTGGGGATTGGGCGGGGGCACGGGCGGTgtgctgcctcccc
tcccacccccgcaGACGCTGGATCAGTCCTCAGCCGGCCTGGCGGGTCTG
GGCGCCCTGCTGGGTGGGGGGAATCAGGCGGCATCCCAGGAGTTGGTGAA
ACAGATCATGGAGCTCACGCCCGAGCAGCTGGCGGGGTTGGATCCGGGGC
GGCGGCAAATGTTGGCAGGGGCCGGCAAGAGGCTCGCCAGCTATCTAGCT
GGACAGAGACAAGAGGCTCGGGCCACCGAATGTGGACATGCTCTAGGGCA
CCCTCAAAAGGAATCTTTGGCTTGTGCGATATGAATGTCCGGCGACTCCA
AATGGCAAATATTTATCGGGAACGtaagcagcagcaccacgGACGAGAAG
CTGCGCCAAGTTTTCTCGACGGCAGGGAATGTGGTGAATGTGCGCGTAAT
GACAGACCGCGGAGACCCCAAAAAAGGTTACGCCTTCGTGGAATACGACA
ACCCGGACACAGCCTTGACCGCCATTCAGAACCTTGGCAATGTGGAGGTG
GACGGGCGCCGACTTCGCGTGGGCTTCAGCAACAACAGCGGGCTGGAGGC
CATCGCCAAGCAGAGGGGCTTGACTATCTTGCCAGGCGGGGGGGTGACGG
GCAAGAGTCTGGACGGCGTCCTCACCcagttctccctccccgacatGTAC
GATATGATTGCGCATCTGAAAGACGTGGCGGAAAACAAACCCGATGAGCT
ACGCTTGCTGCTCATCTCACATCCGCAGATAGGGGAGGCGATCATTCACA
TGCAGGTGAAGATCGGGATGATCCGGCCCTTGGCCCGCGCGGCCGACCAG
TcacactttccctcccaggcgTCCACACAGCAGTCACAGCAGCACCAACA
GCcgctccagccctccctccagcctcccacccctctcggTGCCTTTGGCG
GGCCCCAGCAGCAGCCAGGAGGGGGATCCTACTACCAgtctctgccgccg
ccgcttccgcccccccAGCCAGGGCAGTGGGGATTGGGCGGGGGCACGGG
CGGTgtgctgcctcccctcccacccccgcaGACGCTGGATCAGTCCTCAG
CCGGCCTGGCGGGTCTGGGCGCCCTGCTGGGTGGGGGGAATCAGGCGGCA
TCCCAGGAGTTGGTGAAACAGATCATGGAGCTCACGCCCGAGCAGCTGGC
GGGGTTGGATCCGGGGCGGCGGCAAATGTTGGCAGGGGCCGGCAAGAGGC
TCGCCAGCTATCTAGCTGGACAGAGACAAGAGGCTCGGGCCACCGAATGT
GGACATGCTCTAGGGCACCCTCAAAAGGAATCTTTGGCTTGTGCGATATG
A

Synonyms

Publications