EWM21121.1, cds9545 (CDS) Nannochloropsis gaditana

Overview
NameEWM21121.1
Unique Namecds9545
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:212259..212400 +
Alignment locationKK037254.1:212545..213299 +
Alignment locationKK037254.1:213389..213508 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21121.1
Productcleavage stimulation factor subunit 2
Orig transcript idgnl|cribi|Naga_100041g16.3691.mrna
GeneCSTF64
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:212259..212400 +
KK037254.1supercontigKK037254.1:212545..213299 +
KK037254.1supercontigKK037254.1:213389..213508 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR025742CSTF2_hinge
IPR000504RRM_dom
Homology
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|585101188|gb|EWM21121.1| (cleavage stimulation factor subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0
Query:    1 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRPLARAADQSHFPSQASTQQSQQHQQPLQPSLQPPTPLGAFGGPQQQPGGGSYYQSLPPPLPPPQPGQWGLGGGTGGVLPPLPPPQTLDQSSAGLAGLGALLGGGNQAASQELVKQIMELTPEQLAGLDPGRRQMLAGAGKRLASYLAGQRQEARATECGHALGHPQKESLACAI 338
            MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRPLARAADQSHFPSQASTQQSQQHQQPLQPSLQPPTPLGAFGGPQQQPGGGSYYQSLPPPLPPPQPGQWGLGGGTGGVLPPLPPPQTLDQSSAGLAGLGALLGGGNQAASQELVKQIMELTPEQLAGLDPGRRQMLAGAGKRLASYLAGQRQEARATECGHALGHPQKESLACAI
Sbjct:    1 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRPLARAADQSHFPSQASTQQSQQHQQPLQPSLQPPTPLGAFGGPQQQPGGGSYYQSLPPPLPPPQPGQWGLGGGTGGVLPPLPPPQTLDQSSAGLAGLGALLGGGNQAASQELVKQIMELTPEQLAGLDPGRRQMLAGAGKRLASYLAGQRQEARATECGHALGHPQKESLACAI 338          
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|299472383|emb|CBN77571.1| (similar to CG7697-PA [Ectocarpus siliculosus])

HSP 1 Score: 137.117 bits (344), Expect = 5.732e-32
Identity = 65/158 (41.14%), Postives = 110/158 (69.62%), Query Frame = 0
Query:    9 IFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTD--RGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIR 164
            +F+GN+   TT+E+L ++FS AG +V++R++ D   G PK G+AFVEY++  TAL+AI+NL   + +GR LRV FSNNS L A  +QRG           +++ GV+ Q  + +++D+++++K + E +PD+ + + +SHPQ+ EA++HMQV++GM +
Sbjct:   11 VFVGNIPFGTTEEQLHEIFSEAGGIVSIRLVLDFETGKPK-GFAFVEYEDAATALSAIRNLNGYDCNGRLLRVNFSNNSSLGA-EQQRG----EKAPQQERTVKGVVMQMGIYEVWDIVSNMKQLVEKEPDKAKQMFVSHPQVAEALLHMQVRLGMFK 162          
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|1210524869|dbj|GAX16304.1| (cleavage stimulation factor subunit 2 [Fistulifera solaris])

HSP 1 Score: 122.479 bits (306), Expect = 1.410e-28
Identity = 72/186 (38.71%), Postives = 111/186 (59.68%), Query Frame = 0
Query:    6 KWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTD--RGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTI------------------LPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIR-PLARAA 170
            K  IF+GN++ +TT+E+L Q FS  G V+NVR++TD   G P+ G+AFVE+ +   AL+AI+N+ + E++GRRLRV FSN+S LE +A + G+ +                   PG     ++L  +    S  +MYD++A LK++     +E R LL SHPQ+ EAI+    K+ M++ P+  AA
Sbjct:   32 KNDIFVGNLAFNTTEEQLHQAFSDIGRVINVRLVTDVDTGKPR-GFAFVEFQDAQAALSAIRNMNDYELNGRRLRVNFSNSSHLEDLAGKLGMDLSQAKRQQQNQQVGTLAAPSPGTSAVAEALKAM----SKAEMYDVVAKLKEL---DAEEARRLLASHPQLPEAILFCMSKLDMVKTPVTTAA 209          
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|1210512125|dbj|GAX28829.1| (cleavage stimulation factor subunit 2 [Fistulifera solaris])

HSP 1 Score: 121.709 bits (304), Expect = 3.211e-28
Identity = 69/179 (38.55%), Postives = 106/179 (59.22%), Query Frame = 0
Query:    6 KWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTD--RGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTI------------------LPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIR 164
            K  IF+GN++ +TT+E+L Q FS  G V+NVR++TD   G P+ G+AFVE+ +   AL+AI+N+ + E++GRRLRV FSN+S LE +A + G+ +                   PG      +L  +    S  +MYD++A LK++     +E R LL SHPQ+ EAI+    K+ M++
Sbjct:   30 KNDIFVGNLAFNTTEEQLHQAFSDIGRVINVRLVTDVDTGKPR-GFAFVEFQDAQAALSAIRNMNDYELNGRRLRVNFSNSSHLEDLAGKLGMDLSQAKRQQQNQQVGTNAAPTPGTSAVADALKAM----SKAEMYDVVAKLKEL---DAEEARRLLASHPQLPEAILFCMSKLDMVK 200          
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|813178148|ref|XP_012205543.1| (hypothetical protein SPRG_10503 [Saprolegnia parasitica CBS 223.65] >gi|641529559|gb|KDO23725.1| hypothetical protein SPRG_10503 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 105.145 bits (261), Expect = 2.290e-22
Identity = 58/160 (36.25%), Postives = 90/160 (56.25%), Query Frame = 0
Query:    1 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTG----KSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIH 155
            M    +  +F+GN+    T+E LR++FS AG VVN R++TDR   K KGY F EY++  TAL+A++NL   E++GR LRV F++    +   + R        GVTG    KS++  +       +YDM+   ++ A  KP+  + LL ++P +  AII 
Sbjct:    6 MGTAKERSVFVGNIPYDVTEEMLREIFSEAGPVVNFRLVTDRESGKPKGYGFCEYNDGATALSAMRNLNGYEINGRNLRVDFADGGERQGTDRDR------QSGVTGEAIIKSIEAAVAAQGRVPIYDMLVAFREYARAKPEMTKTLLNANPVLAHAIIE 159          
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|669148404|ref|XP_008609764.1| (hypothetical protein SDRG_05804 [Saprolegnia diclina VS20] >gi|530738741|gb|EQC36983.1| hypothetical protein SDRG_05804 [Saprolegnia diclina VS20])

HSP 1 Score: 104.76 bits (260), Expect = 3.097e-22
Identity = 58/160 (36.25%), Postives = 90/160 (56.25%), Query Frame = 0
Query:    1 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTG----KSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIH 155
            M    +  +F+GN+    T+E LR++FS AG VVN R++TDR   K KGY F EY++  TAL+A++NL   E++GR LRV F++    +   + R        GVTG    KS++  +       +YDM+   ++ A  KP+  + LL ++P +  AII 
Sbjct:    6 MGTAKERSVFVGNIPYDVTEEMLREIFSEAGPVVNFRLVTDRESGKPKGYGFCEYNDGATALSAMRNLNGYEINGRNLRVDFADGGERQGTDRDR------QSGVTGEAIIKSIEAAVAAQGRVPIYDMLVAFREYARAKPEMTKTLLNANPVLAHAIIE 159          
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|1173946919|gb|OQR95383.1| (hypothetical protein THRCLA_07918 [Thraustotheca clavata])

HSP 1 Score: 101.679 bits (252), Expect = 4.426e-21
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 0
Query:    1 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTG----KSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIH 155
            M    +  +F+GN+    T++ LR++FS AG V+N R++TDR   K KGY F EY +  TAL+A++NL   E++GR LRV F++    +   + R        GVTG    KS++  +       +YDM+   ++ A  KP+  + LL ++P +  AII 
Sbjct:   12 MGTAKERSVFVGNIPYDVTEDMLREIFSEAGPVLNFRLVTDRETGKPKGYGFCEYGDGATALSAMRNLNGYEINGRNLRVDFADGGERQGTDRDR------QSGVTGEAIIKSIEAAIAAQGRVALYDMLVQFREYARTKPEMTKTLLNANPVLAHAIIE 165          
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|1129959841|ref|XP_019739609.1| (PREDICTED: cleavage stimulation factor subunit 2 [Hippocampus comes])

HSP 1 Score: 102.449 bits (254), Expect = 1.589e-20
Identity = 73/242 (30.17%), Postives = 115/242 (47.52%), Query Frame = 0
Query:    5 SKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDR--GDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFS----NNSGLEAIAKQRGLTILPGGGVTG-----KSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRPLARAADQSHFPSQASTQQSQQHQQPL--------QPSLQPPTPLGAFGGPQQQPGGGSYYQSLPPPLPPP 227
            S   +F+GN+    T+E+L+ +FS  G VV+ R++ DR  G PK GY F EY + +TAL+A++NL   E +GR LRV  +    N   L+++     +   P G         +S+   +       M++++  +K   +N P E R +L+ +PQ+  A++  QV + ++ P   A    H          Q   QPL         P + PP  L     PQQQP  G +    PP + PP
Sbjct:   25 SLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPK-GYGFCEYQDQETALSAMRNLNGREFNGRALRVDNAASEKNKEELKSLGTGAPIIESPFGDSVSPEEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEI-ALKMLH---------RQNTTQPLISSGQGGGAPPVNPPPALANMAAPQQQPVAGMHVNGAPPMMQPP 255          
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|1190431373|ref|XP_020819047.1| (cleavage stimulation factor subunit 2 isoform X7 [Phascolarctos cinereus])

HSP 1 Score: 102.064 bits (253), Expect = 2.356e-20
Identity = 76/240 (31.67%), Postives = 118/240 (49.17%), Query Frame = 0
Query:    5 SKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDR--GDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFS----NNSGLEAIAKQRGLTILPGGGVTG-----KSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRP---LARAADQSHFPSQASTQQSQQHQQPLQPSLQPPTPLGAFGGPQQQPGGGSYYQSLPPPLPPPQPG 230
            S   +F+GN+    T+E+L+ +FS  G VV+ R++ DR  G PK GY F EY + +TAL+A++NL   E  GR LRV  +    N   L+++     +   P G         +S+   +       M++++  +K   +N P E R +L+ +PQ+  A++  QV + ++ P   L     Q++ PS       Q  Q P  P  QP TP       Q QP GG +    PP + PP PG
Sbjct:   14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK-GYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIESPYGDPISPEDAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQANIPSLIQG-NPQPGQGPSAPMNQPNTPAS-----QPQPLGGMHVNGAPPLMQPPLPG 246          
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|1190431369|ref|XP_020819045.1| (cleavage stimulation factor subunit 2 isoform X5 [Phascolarctos cinereus])

HSP 1 Score: 102.064 bits (253), Expect = 2.971e-20
Identity = 76/240 (31.67%), Postives = 118/240 (49.17%), Query Frame = 0
Query:    5 SKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDR--GDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFS----NNSGLEAIAKQRGLTILPGGGVTG-----KSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRP---LARAADQSHFPSQASTQQSQQHQQPLQPSLQPPTPLGAFGGPQQQPGGGSYYQSLPPPLPPPQPG 230
            S   +F+GN+    T+E+L+ +FS  G VV+ R++ DR  G PK GY F EY + +TAL+A++NL   E  GR LRV  +    N   L+++     +   P G         +S+   +       M++++  +K   +N P E R +L+ +PQ+  A++  QV + ++ P   L     Q++ PS       Q  Q P  P  QP TP       Q QP GG +    PP + PP PG
Sbjct:   14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK-GYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIESPYGDPISPEDAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQANIPSLIQG-NPQPGQGPSAPMNQPNTPAS-----QPQPLGGMHVNGAPPLMQPPLPG 246          
The following BLAST results are available for this feature:
BLAST of EWM21121.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101188|gb|EWM21121.1|0.000e+0100.00cleavage stimulation factor subunit 2 [Nannochloro... [more]
gi|299472383|emb|CBN77571.1|5.732e-3241.14similar to CG7697-PA [Ectocarpus siliculosus][more]
gi|1210524869|dbj|GAX16304.1|1.410e-2838.71cleavage stimulation factor subunit 2 [Fistulifera... [more]
gi|1210512125|dbj|GAX28829.1|3.211e-2838.55cleavage stimulation factor subunit 2 [Fistulifera... [more]
gi|813178148|ref|XP_012205543.1|2.290e-2236.25hypothetical protein SPRG_10503 [Saprolegnia paras... [more]
gi|669148404|ref|XP_008609764.1|3.097e-2236.25hypothetical protein SDRG_05804 [Saprolegnia dicli... [more]
gi|1173946919|gb|OQR95383.1|4.426e-2135.00hypothetical protein THRCLA_07918 [Thraustotheca c... [more]
gi|1129959841|ref|XP_019739609.1|1.589e-2030.17PREDICTED: cleavage stimulation factor subunit 2 [... [more]
gi|1190431373|ref|XP_020819047.1|2.356e-2031.67cleavage stimulation factor subunit 2 isoform X7 [... [more]
gi|1190431369|ref|XP_020819045.1|2.971e-2031.67cleavage stimulation factor subunit 2 isoform X5 [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9576rna9576Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications