EWM21121.1, cds9545 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|585101188|gb|EWM21121.1| (cleavage stimulation factor subunit 2 [Nannochloropsis gaditana]) HSP 1 Score: 679.478 bits (1752), Expect = 0.000e+0 Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0 Query: 1 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRPLARAADQSHFPSQASTQQSQQHQQPLQPSLQPPTPLGAFGGPQQQPGGGSYYQSLPPPLPPPQPGQWGLGGGTGGVLPPLPPPQTLDQSSAGLAGLGALLGGGNQAASQELVKQIMELTPEQLAGLDPGRRQMLAGAGKRLASYLAGQRQEARATECGHALGHPQKESLACAI 338 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRPLARAADQSHFPSQASTQQSQQHQQPLQPSLQPPTPLGAFGGPQQQPGGGSYYQSLPPPLPPPQPGQWGLGGGTGGVLPPLPPPQTLDQSSAGLAGLGALLGGGNQAASQELVKQIMELTPEQLAGLDPGRRQMLAGAGKRLASYLAGQRQEARATECGHALGHPQKESLACAI Sbjct: 1 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRPLARAADQSHFPSQASTQQSQQHQQPLQPSLQPPTPLGAFGGPQQQPGGGSYYQSLPPPLPPPQPGQWGLGGGTGGVLPPLPPPQTLDQSSAGLAGLGALLGGGNQAASQELVKQIMELTPEQLAGLDPGRRQMLAGAGKRLASYLAGQRQEARATECGHALGHPQKESLACAI 338
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|299472383|emb|CBN77571.1| (similar to CG7697-PA [Ectocarpus siliculosus]) HSP 1 Score: 137.117 bits (344), Expect = 5.732e-32 Identity = 65/158 (41.14%), Postives = 110/158 (69.62%), Query Frame = 0 Query: 9 IFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTD--RGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIR 164 +F+GN+ TT+E+L ++FS AG +V++R++ D G PK G+AFVEY++ TAL+AI+NL + +GR LRV FSNNS L A +QRG +++ GV+ Q + +++D+++++K + E +PD+ + + +SHPQ+ EA++HMQV++GM + Sbjct: 11 VFVGNIPFGTTEEQLHEIFSEAGGIVSIRLVLDFETGKPK-GFAFVEYEDAATALSAIRNLNGYDCNGRLLRVNFSNNSSLGA-EQQRG----EKAPQQERTVKGVVMQMGIYEVWDIVSNMKQLVEKEPDKAKQMFVSHPQVAEALLHMQVRLGMFK 162
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|1210524869|dbj|GAX16304.1| (cleavage stimulation factor subunit 2 [Fistulifera solaris]) HSP 1 Score: 122.479 bits (306), Expect = 1.410e-28 Identity = 72/186 (38.71%), Postives = 111/186 (59.68%), Query Frame = 0 Query: 6 KWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTD--RGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTI------------------LPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIR-PLARAA 170 K IF+GN++ +TT+E+L Q FS G V+NVR++TD G P+ G+AFVE+ + AL+AI+N+ + E++GRRLRV FSN+S LE +A + G+ + PG ++L + S +MYD++A LK++ +E R LL SHPQ+ EAI+ K+ M++ P+ AA Sbjct: 32 KNDIFVGNLAFNTTEEQLHQAFSDIGRVINVRLVTDVDTGKPR-GFAFVEFQDAQAALSAIRNMNDYELNGRRLRVNFSNSSHLEDLAGKLGMDLSQAKRQQQNQQVGTLAAPSPGTSAVAEALKAM----SKAEMYDVVAKLKEL---DAEEARRLLASHPQLPEAILFCMSKLDMVKTPVTTAA 209
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|1210512125|dbj|GAX28829.1| (cleavage stimulation factor subunit 2 [Fistulifera solaris]) HSP 1 Score: 121.709 bits (304), Expect = 3.211e-28 Identity = 69/179 (38.55%), Postives = 106/179 (59.22%), Query Frame = 0 Query: 6 KWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTD--RGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTI------------------LPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIR 164 K IF+GN++ +TT+E+L Q FS G V+NVR++TD G P+ G+AFVE+ + AL+AI+N+ + E++GRRLRV FSN+S LE +A + G+ + PG +L + S +MYD++A LK++ +E R LL SHPQ+ EAI+ K+ M++ Sbjct: 30 KNDIFVGNLAFNTTEEQLHQAFSDIGRVINVRLVTDVDTGKPR-GFAFVEFQDAQAALSAIRNMNDYELNGRRLRVNFSNSSHLEDLAGKLGMDLSQAKRQQQNQQVGTNAAPTPGTSAVADALKAM----SKAEMYDVVAKLKEL---DAEEARRLLASHPQLPEAILFCMSKLDMVK 200
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|813178148|ref|XP_012205543.1| (hypothetical protein SPRG_10503 [Saprolegnia parasitica CBS 223.65] >gi|641529559|gb|KDO23725.1| hypothetical protein SPRG_10503 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 105.145 bits (261), Expect = 2.290e-22 Identity = 58/160 (36.25%), Postives = 90/160 (56.25%), Query Frame = 0 Query: 1 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTG----KSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIH 155 M + +F+GN+ T+E LR++FS AG VVN R++TDR K KGY F EY++ TAL+A++NL E++GR LRV F++ + + R GVTG KS++ + +YDM+ ++ A KP+ + LL ++P + AII Sbjct: 6 MGTAKERSVFVGNIPYDVTEEMLREIFSEAGPVVNFRLVTDRESGKPKGYGFCEYNDGATALSAMRNLNGYEINGRNLRVDFADGGERQGTDRDR------QSGVTGEAIIKSIEAAVAAQGRVPIYDMLVAFREYARAKPEMTKTLLNANPVLAHAIIE 159
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|669148404|ref|XP_008609764.1| (hypothetical protein SDRG_05804 [Saprolegnia diclina VS20] >gi|530738741|gb|EQC36983.1| hypothetical protein SDRG_05804 [Saprolegnia diclina VS20]) HSP 1 Score: 104.76 bits (260), Expect = 3.097e-22 Identity = 58/160 (36.25%), Postives = 90/160 (56.25%), Query Frame = 0 Query: 1 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTG----KSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIH 155 M + +F+GN+ T+E LR++FS AG VVN R++TDR K KGY F EY++ TAL+A++NL E++GR LRV F++ + + R GVTG KS++ + +YDM+ ++ A KP+ + LL ++P + AII Sbjct: 6 MGTAKERSVFVGNIPYDVTEEMLREIFSEAGPVVNFRLVTDRESGKPKGYGFCEYNDGATALSAMRNLNGYEINGRNLRVDFADGGERQGTDRDR------QSGVTGEAIIKSIEAAVAAQGRVPIYDMLVAFREYARAKPEMTKTLLNANPVLAHAIIE 159
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|1173946919|gb|OQR95383.1| (hypothetical protein THRCLA_07918 [Thraustotheca clavata]) HSP 1 Score: 101.679 bits (252), Expect = 4.426e-21 Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 0 Query: 1 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTG----KSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIH 155 M + +F+GN+ T++ LR++FS AG V+N R++TDR K KGY F EY + TAL+A++NL E++GR LRV F++ + + R GVTG KS++ + +YDM+ ++ A KP+ + LL ++P + AII Sbjct: 12 MGTAKERSVFVGNIPYDVTEDMLREIFSEAGPVLNFRLVTDRETGKPKGYGFCEYGDGATALSAMRNLNGYEINGRNLRVDFADGGERQGTDRDR------QSGVTGEAIIKSIEAAIAAQGRVALYDMLVQFREYARTKPEMTKTLLNANPVLAHAIIE 165
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|1129959841|ref|XP_019739609.1| (PREDICTED: cleavage stimulation factor subunit 2 [Hippocampus comes]) HSP 1 Score: 102.449 bits (254), Expect = 1.589e-20 Identity = 73/242 (30.17%), Postives = 115/242 (47.52%), Query Frame = 0 Query: 5 SKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDR--GDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFS----NNSGLEAIAKQRGLTILPGGGVTG-----KSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRPLARAADQSHFPSQASTQQSQQHQQPL--------QPSLQPPTPLGAFGGPQQQPGGGSYYQSLPPPLPPP 227 S +F+GN+ T+E+L+ +FS G VV+ R++ DR G PK GY F EY + +TAL+A++NL E +GR LRV + N L+++ + P G +S+ + M++++ +K +N P E R +L+ +PQ+ A++ QV + ++ P A H Q QPL P + PP L PQQQP G + PP + PP Sbjct: 25 SLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPK-GYGFCEYQDQETALSAMRNLNGREFNGRALRVDNAASEKNKEELKSLGTGAPIIESPFGDSVSPEEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEI-ALKMLH---------RQNTTQPLISSGQGGGAPPVNPPPALANMAAPQQQPVAGMHVNGAPPMMQPP 255
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|1190431373|ref|XP_020819047.1| (cleavage stimulation factor subunit 2 isoform X7 [Phascolarctos cinereus]) HSP 1 Score: 102.064 bits (253), Expect = 2.356e-20 Identity = 76/240 (31.67%), Postives = 118/240 (49.17%), Query Frame = 0 Query: 5 SKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDR--GDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFS----NNSGLEAIAKQRGLTILPGGGVTG-----KSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRP---LARAADQSHFPSQASTQQSQQHQQPLQPSLQPPTPLGAFGGPQQQPGGGSYYQSLPPPLPPPQPG 230 S +F+GN+ T+E+L+ +FS G VV+ R++ DR G PK GY F EY + +TAL+A++NL E GR LRV + N L+++ + P G +S+ + M++++ +K +N P E R +L+ +PQ+ A++ QV + ++ P L Q++ PS Q Q P P QP TP Q QP GG + PP + PP PG Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK-GYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIESPYGDPISPEDAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQANIPSLIQG-NPQPGQGPSAPMNQPNTPAS-----QPQPLGGMHVNGAPPLMQPPLPG 246
BLAST of EWM21121.1 vs. NCBI_GenBank
Match: gi|1190431369|ref|XP_020819045.1| (cleavage stimulation factor subunit 2 isoform X5 [Phascolarctos cinereus]) HSP 1 Score: 102.064 bits (253), Expect = 2.971e-20 Identity = 76/240 (31.67%), Postives = 118/240 (49.17%), Query Frame = 0 Query: 5 SKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDR--GDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFS----NNSGLEAIAKQRGLTILPGGGVTG-----KSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRP---LARAADQSHFPSQASTQQSQQHQQPLQPSLQPPTPLGAFGGPQQQPGGGSYYQSLPPPLPPPQPG 230 S +F+GN+ T+E+L+ +FS G VV+ R++ DR G PK GY F EY + +TAL+A++NL E GR LRV + N L+++ + P G +S+ + M++++ +K +N P E R +L+ +PQ+ A++ QV + ++ P L Q++ PS Q Q P P QP TP Q QP GG + PP + PP PG Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK-GYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIESPYGDPISPEDAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQANIPSLIQG-NPQPGQGPSAPMNQPNTPAS-----QPQPLGGMHVNGAPPLMQPPLPG 246 The following BLAST results are available for this feature:
BLAST of EWM21121.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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