rna9574, rna9574 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9574
Unique Name	rna9574
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1518
Alignment location	KK037254.1:203474..205912 +

Link to JBrowse

Properties


Property Name	Value
Product	tryptophanyl-trna cytoplasmic
Orig transcript id	gnl\|cribi\|Naga_100041g13.3699.mrna
Orig protein id	gnl\|cribi\|Naga_100041g13.3699
Gene	TrpRS
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:203474..205912 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
TrpRS	gene9294	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9574	rna9574-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21129.1	cds9543	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:203474..205912+
coding sequence from alignment at KK037254.1:203474..205912+

mRNA sequence

>rna9574 ID=rna9574|Name=rna9574|organism=Nannochloropsis gaditana|type=mRNA|length=1518bp
AAACATGGGCACTCACCCATGCTCACACATGTATTTGACTCAACGTTAAA
TTTTCTTTGCAGGGCTTTACAGGGTTCTTTAATCCTTCGAAAAGAGAGAA
CGTGGCGCCGCCATCCCAAGAACAAGAACACACGGCCGATTCCGCAATGG
GAGCCTCCATCGACGAGCGCAAACCCATGGTGAGCGGCTTTGGATATGCA
TCTCACAGTAGCTCTGGGATCGGATCTGCTCATTTTCGAGGCCGTGGCCG
CTCCCACGCACCATTTAAGACATGGATCTGGAGACACTGGCCTCTCCTGA
TGGTCGGCTCATTCGGAGCTTTCTATCTGATCCATCGGCTCTCGCATATG
GGTTCCTCCACTTCAGCACCTAAAGTCACGTCACAAAGTGCACAGCAGCT
GCGTAGCGATTCAAGTCGTGTGCAGAATGGCAAGGTGCGCCTGAGTGACC
TGATCGGCGCAAGTATTCACCTGTCGGAGGTAGCGGCCCATGAGATAACT
GACGTTAAATTCGGAGGCAAAGAGGCCACTGAGGTGAAAGGCAAGACCGA
TGAAGGTGTCGACGAGCCAGTAACGTTGGCGGATGCTCGGAGCAATAGCG
TGTTCGTCAACGGACTTAGAGAATTGTTTCCGGGCATCAGTATTCTTTCC
GAGGAGACGGACCCGGACCTGGAAGAGGTTGGCATTTCGGCCATCAATGG
GGTGGAGCTCACGCATGATCCCTGGCTAGACTTGAAGGATATATTGATCA
CAGTCGATCCTTTGGACGCCACGAAGGAGTTCACAGAAAACTTGCTGCAC
TTTGTGACTACCATGGTATGCGTGGTGCATAAGGGCAAGCCCATAGCAGG
CATCATTAACGAGCCCTTCGTCAAAGATGAGGCGGCAGTCTGGGGCGTGG
CATTGGACAAAGCAACAGAAGGGGCGGACTTACGAGTGAGTCACGGCCTG
CAGCCCTCGACAGAGGACACGGTCGCGGGGGCGGACAAAGTAGTAATTTC
GCGGTCTCACACAGGGAGTGGCGCCGATGTCGTGTCAGAATATTTACCCG
GCAAGCAGCCTGTGTTTGCAGGAGGTTCAGGATATAAGGCCTTGCGCGTG
CTGGAAGGCGATGCTAATGCATACGTGCATGTAACCAAGATAAAATCATG
GGACGTGTGCGCGGCCGACGCGGTCGTGCATGCGGCTGGTGGTAAATTCA
CCAATTTGAAGGGAGAACGACTTGTGTACGAGAAAGATGACCCCTTGATT
TCAGGCGGGATCATCGCTGCGGCCGACTCCAAGATGCATGCCTGGTATGT
GGAAAAGCTAGCTCCCTTTCTATCGAGCCACGGCGACAAGCAGAGGATTT
AAGAAAGGAAGAGCGAAATATAGTGGGGTGGTGAGGCATGGGCCAAACGA
GCAGGTGAAAATAGTGAAAGATTTGTGTCTAGATGGGGTAAAGTGTATCA
GTGTACCAACAAATCCAATCCATTCATCGGACTACACAAGTGAAAGAATA
AAATCATGTATTATGATA

protein sequence of rna9574

>rna9574-protein ID=rna9574-protein|Name=rna9574|organism=Nannochloropsis gaditana|type=polypeptide|length=566bp
MASPSELRTPQAVTSALIVKGALANVLGFPIGGTTIGTHYSEGHRVRLTV
QIGQAPDPTETQFIQVAETINTILAANQPVHVFKLARHRAQTSYKNAMYN
RHAVPESITELTIAYIEKIAFSCTAEAVVASTGMVGAITINKTKFRSAKK
ELEIQYTVSTPSESGPAVLAVAKEDDETLPSSEAISLLNSDTVRQASGGK
GNEKGGNGGSIGSASGEGGQVVTPWEVEGDQEIDYDKLIKSFGSMRITES
LVSRIERLTNRKCHRFLRRGLFFSHRDLTQLLDLYEKGTKFYLYTGRGPS
SESLHLGHLIPFHFTRYLQEAFDVPLVIQLTDDEKFQFKQGLALEECHRL
AYENAKDVIACGFDVKKTFIFSDLDYIQHLYPTVLKIQKLVTFNQARGIF
GFTESDSCGKIAFPAVQAAPSFPSSFPVPLKGCLDMPCLIPCAIDQDAYF
RMTRDVAPRLGCKKPSLIHSKFFPGLEVSGCGGAKIERAIMRGAGLQLFE
AGYNCDCINLRWDISEGFFFKPCVLTDERDIPMYLPTPPFPLPPVTVPPR
AKAARCPPRPSSRPSM

mRNA from alignment at KK037254.1:203474..205912+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9574 ID=rna9574|Name=rna9574|organism=Nannochloropsis gaditana|type=mRNA|length=2439bp|location=Sequence derived from alignment at KK037254.1:203474..205912+ (Nannochloropsis gaditana)
ttcttctcgacTTGACGACGCTCGCAGCTATGAAAGAAACCGCTAGTTCC
AGATTTCTACCGCTAGTTCCAGATTTCTTTTTTTATTTTGCTCGGGAGAT
ACCTAATCTTACGATATATGCTCCCATCGCGACCTGCTTGGACGCACTCC
TAGGGTGACGATAATGGCCAGCCCATCGGAATTAAGAACCCCTCAAGCGG
TCACTAGTGCCCTTATCGTAAAGGTAAATATTTCTAGAGCCATTTCGCAT
GTTCTGcatctttttcttgcctCCAAAAAACCTTAAACAATAAGCCTCCC
CCCTAATTCCCATGTACCCGCAAACTTTATCCAGGGGGCTCTTGCAAATG
TGCTGGGTTTCCCTATTGGAGGCACAACGATCGGGACGCACTACTCCGAA
GGGCATCGTGTCCGATTGACCGTACAGATAGGACAAGCTCCCGACCCAAC
GGAGACACAATTTATCCAAGTTGCTGAGACCATCAACACCATTCTGGCTG
CGAACCAACCCGTTCATGTCTTCAAACTTGCCAGACACCGAGCCCAGACA
TCCTATAAAAACGCCATGTACAACAGGCATGCTGTTCCGGAGAGCATCAC
AGAGCTGACGATCGCATATATCGAAAAAATTGCTTTTTCGTGCACGGCGG
AGGCCGTTGTAGCTAGCACAGGGATGGTGGGCGCAATTACCATCAATAAA
ACCAAATTTCGTTCAGCTAAAAAGGAGTTGGAGATTCAGTACACAGTGTC
AACCCCGTCTGAGTCTGGGCCGGCTGTACTGGCGGTGGCgaaggaagacg
atgagACACTTCCCTCTTCCGAAGCGATTTCCCTCCTGAACAGTGACACC
GTGCGCCAGGCGTctggtgggaaagggaatgaaaaaggaggaaatggtgg
aAGCATAGGAAGTGCTTCGGGAGAAGGTGGCCAGGTGGTGACGCCCTGGG
AGGTAGAAGGCGACCAAGAGATCGACTACGACAAATTGATCAAGAGCTTC
GGGTCCATGCGCATCACGGAGAGCTTGGTCTCGCGCATCGAGCGGCTGAC
AAATCGAAAGTGTCACCGATTCTTAAGGCGGGGCCTGTTTTTCTCCCACC
GAGACCTAACACAGCTTCTAGATCTGTACGAGAAGGGCACCAAGTTTTAC
CTGTACACGGGGCgcggcccttcctccgagaGCCTGCACCTCGGGCACCT
CATCCCCTTCCACTTCACCCGCTACCTCCAGGAGGCTTTCGACGTCCCTT
TAGTCATTCAGTTGACAGATGACGAGAAGTTTCAGTTCAAGCAAGGGCTG
GCTTTGGAGGAATGCCACCGATTAGCCTATGAGAACGCTAAGGACGTGAT
CGCCTGTGGCTTCGACGTGAAGAAGACCTTCATCTTCAGCGACCTCGACT
ACATCCAGCACCTTTACCCGACAGTTTTAAAAATCCAGAAGCTCGTGACC
TTCAATCAAGCTCGAGGCATCTTTGGCTTCACAGAGTCAGACTCGTGCGG
GAAAATTGCCTTCCCAGCAGTCCAGgcggccccttccttcccctcctcct
tccctgttcCACTCAAAGGCTGCTTGGATATGCCCTGCCTTATACCTTGC
GCGATTGACCAAGACGCATACTTTCGGATGACGCGGGACGTGGCACCTCG
CTTGGGGTGCAAGAAACCGTCGCTCATCCATTCCAAATTCTTTCCGGGGC
TGGAGGTGAGTGGTTGCGGAGGGGCGAAGATAGAGCGTGCAATCATGCGA
GGCGCAGGACTACAACTTTTTGAAGCAGGCTATAATTGTGATTGTATTAA
TCTCCGTTGGGATATAAGTGAAGGATTTTTCTTTAAACCATGTGTGCTTA
CTGACGAGCGCGATATTCCCATGTATTTACCCAcaccgccctttcccctc
ccacctgtcACCGTGCCTCCCAGGGCAAAGGCGGCAAGATGTCCGCCTCG
GCCGAGCAGTCGGCCATCTATGTGACGGATACCGGCAAGAAGATCAAAAC
CAAGATCGGTCGGGCCTTCTCGGGCGGTCAGGAGACTGCCGAGCTCCAGA
AGGAGCTGGGGGCGGacctggaggtggacgtaGCTTATCAATACCTGACC
TTCTTcttggaggacgacgacgaatTGGAGACGATCGGCAGGGAGTATAA
GGCAGGCAGGATGATGACTGGGCAGGTCAAGGGCCGGCTGATTGAGCTGT
TGACAGCCATGGTCAAGGAGCACCAGGACCTGAGGGCAACCGTCGGGGAC
GAGGTCTTGAGAGAGTTCATGCGTGTGCGAGAGCTTGAGTTTTAAAATGG
GGCTATGCATGGGCTTACAGAAGGGCTTGatagagaaggagaaagaagta
TCCGCTCGATCGATCGACACGGCCATTCCGCCGACCTCCATGATGCAGGT
TGCCCTCACTCTTGGCGTCAcaatgatgatgatggtgtC

Coding sequence (CDS) from alignment at KK037254.1:203474..205912+

>rna9574 ID=rna9574|Name=rna9574|organism=Nannochloropsis gaditana|type=CDS|length=3402bp|location=Sequence derived from alignment at KK037254.1:203474..205912+ (Nannochloropsis gaditana)
ATGGCCAGCCCATCGGAATTAAGAACCCCTCAAGCGGTCACTAGTGCCCT
TATCGTAAAGGGGGCTCTTGCAAATGTGCTGGGTTTCCCTATTGGAGGCA
CAACGATCGGGACGCACTACTCCGAAGGGCATCGTGTCCGATTGACCGTA
CAGATAGGACAAGCTCCCGACCCAACGGAGACACAATTTATCCAAGTTGC
TGAGACCATCAACACCATTCTGGCTGCGAACCAACCCGTTCATGTCTTCA
AACTTGCCAGACACCGAGCCCAGACATCCTATAAAAACGCCATGTACAAC
AGGCATGCTGTTCCGGAGAGCATCACAGAGCTGACGATCGCATATATCGA
AAAAATTGCTTTTTCGTGCACGGCGGAGGCCGTTGTAGCTAGCACAGGGA
TGGTGGGCGCAATTACCATCAATAAAACCAAATTTCGTTCAGCTAAAAAG
GAGTTGGAGATTCAGTACACAGTGTCAACCCCGTCTGAGTCTGGGCCGGC
TGTACTGGCGGTGGCgaaggaagacgatgagACACTTCCCTCTTCCGAAG
CGATTTCCCTCCTGAACAGTGACACCGTGCGCCAGGCGTctggtgggaaa
gggaatgaaaaaggaggaaatggtggaAGCATAGGAAGTGCTTCGGGAGA
AGGTGGCCAGGTGGTGACGCCCTGGGAGGTAGAAGGCGACCAAGAGATCG
ACTACGACAAATTGATCAAGAGCTTCGGGTCCATGCGCATCACGGAGAGC
TTGGTCTCGCGCATCGAGCGGCTGACAAATCGAAAGTGTCACCGATTCTT
AAGGCGGGGCCTGTTTTTCTCCCACCGAGACCTAACACAGCTTCTAGATC
TGTACGAGAAGGGCACCAAGTTTTACCTGTACACGGGGCgcggcccttcc
tccgagaGCCTGCACCTCGGGCACCTCATCCCCTTCCACTTCACCCGCTA
CCTCCAGGAGGCTTTCGACGTCCCTTTAGTCATTCAGTTGACAGATGACG
AGAAGTTTCAGTTCAAGCAAGGGCTGGCTTTGGAGGAATGCCACCGATTA
GCCTATGAGAACGCTAAGGACGTGATCGCCTGTGGCTTCGACGTGAAGAA
GACCTTCATCTTCAGCGACCTCGACTACATCCAGCACCTTTACCCGACAG
TTTTAAAAATCCAGAAGCTCGTGACCTTCAATCAAGCTCGAGGCATCTTT
GGCTTCACAGAGTCAGACTCGTGCGGGAAAATTGCCTTCCCAGCAGTCCA
GgcggccccttccttcccctcctccttccctgttcCACTCAAAGGCTGCT
TGGATATGCCCTGCCTTATACCTTGCGCGATTGACCAAGACGCATACTTT
CGGATGACGCGGGACGTGGCACCTCGCTTGGGGTGCAAGAAACCGTCGCT
CATCCATTCCAAATTCTTTCCGGGGCTGGAGGTGAGTGGTTGCGGAGGGG
CGAAGATAGAGCGTGCAATCATGCGAGGCGCAGGACTACAACTTTTTGAA
GCAGGCTATAATTGTGATTGTATTAATCTCCGTTGGGATATAAGTGAAGG
ATTTTTCTTTAAACCATGTGTGCTTACTGACGAGCGCGATATTCCCATGT
ATTTACCCAcaccgccctttcccctcccacctgtcACCGTGCCTCCCAGG
GCAAAGGCGGCAAGATGTCCGCCTCGGCCGAGCAGTCGGCCATCTATGTG
AATGGCCAGCCCATCGGAATTAAGAACCCCTCAAGCGGTCACTAGTGCCC
TTATCGTAAAGGGGGCTCTTGCAAATGTGCTGGGTTTCCCTATTGGAGGC
ACAACGATCGGGACGCACTACTCCGAAGGGCATCGTGTCCGATTGACCGT
ACAGATAGGACAAGCTCCCGACCCAACGGAGACACAATTTATCCAAGTTG
CTGAGACCATCAACACCATTCTGGCTGCGAACCAACCCGTTCATGTCTTC
AAACTTGCCAGACACCGAGCCCAGACATCCTATAAAAACGCCATGTACAA
CAGGCATGCTGTTCCGGAGAGCATCACAGAGCTGACGATCGCATATATCG
AAAAAATTGCTTTTTCGTGCACGGCGGAGGCCGTTGTAGCTAGCACAGGG
ATGGTGGGCGCAATTACCATCAATAAAACCAAATTTCGTTCAGCTAAAAA
GGAGTTGGAGATTCAGTACACAGTGTCAACCCCGTCTGAGTCTGGGCCGG
CTGTACTGGCGGTGGCgaaggaagacgatgagACACTTCCCTCTTCCGAA
GCGATTTCCCTCCTGAACAGTGACACCGTGCGCCAGGCGTctggtgggaa
agggaatgaaaaaggaggaaatggtggaAGCATAGGAAGTGCTTCGGGAG
AAGGTGGCCAGGTGGTGACGCCCTGGGAGGTAGAAGGCGACCAAGAGATC
GACTACGACAAATTGATCAAGAGCTTCGGGTCCATGCGCATCACGGAGAG
CTTGGTCTCGCGCATCGAGCGGCTGACAAATCGAAAGTGTCACCGATTCT
TAAGGCGGGGCCTGTTTTTCTCCCACCGAGACCTAACACAGCTTCTAGAT
CTGTACGAGAAGGGCACCAAGTTTTACCTGTACACGGGGCgcggcccttc
ctccgagaGCCTGCACCTCGGGCACCTCATCCCCTTCCACTTCACCCGCT
ACCTCCAGGAGGCTTTCGACGTCCCTTTAGTCATTCAGTTGACAGATGAC
GAGAAGTTTCAGTTCAAGCAAGGGCTGGCTTTGGAGGAATGCCACCGATT
AGCCTATGAGAACGCTAAGGACGTGATCGCCTGTGGCTTCGACGTGAAGA
AGACCTTCATCTTCAGCGACCTCGACTACATCCAGCACCTTTACCCGACA
GTTTTAAAAATCCAGAAGCTCGTGACCTTCAATCAAGCTCGAGGCATCTT
TGGCTTCACAGAGTCAGACTCGTGCGGGAAAATTGCCTTCCCAGCAGTCC
AGgcggccccttccttcccctcctccttccctgttcCACTCAAAGGCTGC
TTGGATATGCCCTGCCTTATACCTTGCGCGATTGACCAAGACGCATACTT
TCGGATGACGCGGGACGTGGCACCTCGCTTGGGGTGCAAGAAACCGTCGC
TCATCCATTCCAAATTCTTTCCGGGGCTGGAGGTGAGTGGTTGCGGAGGG
GCGAAGATAGAGCGTGCAATCATGCGAGGCGCAGGACTACAACTTTTTGA
AGCAGGCTATAATTGTGATTGTATTAATCTCCGTTGGGATATAAGTGAAG
GATTTTTCTTTAAACCATGTGTGCTTACTGACGAGCGCGATATTCCCATG
TATTTACCCAcaccgccctttcccctcccacctgtcACCGTGCCTCCCAG
GGCAAAGGCGGCAAGATGTCCGCCTCGGCCGAGCAGTCGGCCATCTATGT
GA

Synonyms

Publications