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Properties
| Property Name | Value |
|---|
| Product | Rubisco LS methyltransferase, substrate-binding domain protein |
| Orig transcript id | gnl|cribi|Naga_100041g11.3707.mrna |
| Orig protein id | gnl|cribi|Naga_100041g11.3707 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037254.1 | supercontig | KK037254.1:199277..201612 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9572 ID=rna9572|Name=rna9572|organism=Nannochloropsis gaditana|type=mRNA|length=2199bp
GCAATAATCACCTTACCCGTGGGCTGAAGTCAACAGCTTATATCCTCATG
CATAACAGGGGGAAAGGAAACCGCTCCGGTGTTTCCCTATGCACCGGACC
TCATCCTCTAGCTACCTCGTCCTCGCTTTACTTCTACTACTAGCTACCAG
TTCTGAACCGTTTTCTTTTGGCTGGCTTTTTTCGAGGAATAAACTGTCGA
AGAAGTGCGTTGCATAACCGTACTCTAGGTTACGCATTTCAGAGCTACTA
GTGCTCATATGTATTGGAAATCTGCACAAGCTATAGCAGAACAGCCTTTC
CATCAAATTATGCAACAAGCTCAGAACGATTACTGCTACCCTTGGCTAGA
AGGCAAGAAGCTGGTAAATGCGAGACAGAGTCATGAGCAATCTGTAGATG
ACGTACTTTTAATGTGCCATGATCGTATCTCAGTTGGTGACAAAGAAATG
AAAATGACAGAGCACCGTGTGAACAGCAACATGGATAACGAAGAAGACGA
AGAGAAACGGCGCATAAATCGATTTCTGACTTGGCTACGAGCACATGGCG
CGCGTTGTGACAAGATTGAGTGGCCCTCCTACGCCACTGGCAGCCAGATT
CGGGGTGCCGTCGCCCTGGACGACATCAACAGCAATGAGGACATGGTCAG
CATTCCTGAGCCCCTTCTTCTCACTCCGGACGTAGCTTTGAAGGACCCCG
ACATTGGCAAAGTCTTCGAAGATAATCTGGAGGACTTTTCAGATGAGGAC
ATGCTGCTGATCCTCCTGATGCATGAACGCGGCAAAGGGGAGACATCCTT
CTTCTATCCCTACCTAGCCACCTTGCCCCGCCTGCCCGACACCCTCCTGA
ACTGGAACGAAGAAGGCTTATCCTGGCTACAGGATGAGGGCCTAAGCTTG
GAGGTCTTCTTGCGGGAGAGCCAGCTGACCGCTCACTACACCAGGCTGGT
TGAGGAGAAGCTGAAGGCGGGATGGCCGGGGCTGTTTGGTGAAGCCCCAG
ACGACGCGTCCGACAGCGAGAGCAAGGGAGCCGACCCATATTCCCTGGAG
AATTTCAGGTTTGCCTGGCTGACTATCCAGGCGCGGGCGTTCGGGCGACG
ACTGCCGTACTCGGCCCTGATTCCGCTTTGCGACTCCTTCAACCACGCAA
ACGTCGCGGTCACGTACAGGCTGGAGCCGGCGTCCGTCGCTCTGAACAGA
GAGGGCGGGAGGCAGAGAGAAGAGGATGTGCGCTTGGAAGGACAGATACT
ATTTCCCTGTCCTGATTCCAGATCGCCGCCGCGCGTCTTTCACCTGTCCC
CCAGCGGAAGCAACCGCTACAAGAAAGGAGAGGAGGTTTTCACGTCCTAC
GGGCGACGCACGAACGCGGAGCTCCTCCTTTTCTATGGCTTCGCGCTTCT
CGACAATGAGCACGAGTCTGTGGCCTTAAGTATGCCTGGTATCCCCTCCC
CACCTTCTTGGTTTCAGGCCTCCCTCTCGGCGCTGGGCACAGCTGGCAGC
GTGGGCGGGAGGGCCCGGTCCATGGCCGAGGATGTGCTGCGGCCGTCGCA
CTTACTCTTCGCGGGAGCTACAGAAGTGCCGAGTGAGCTGGTTGCCTATT
TTCGAGCGCTGACTGCTTGTTGCAGCATGAATGAAAAGGATGTTGTGGAG
CAGAAGCTCGATTACATGCAGCATTTCCCCTGCTCACGGCACGAGAGGGA
CGCCTTTTCTACCTTGGGGGCCCACATGAGTGCCTCGTTGGCAGCTTTCC
CCACCTCAATCGAGGAGGATGAAGTAGAGCTCCTTGCCAGTTTGGCCGCG
TCTAAAGGCAGTGAAGGAAAACGACGGGAAGTAGAGCCATGGGAAAACAA
AGGGATCCGTGATGCAGGGGTCAAGGGGGAGAATGCAAGTTGTCGACTCG
CGGCTCTTACATACCGACTAACTCGGAAGCGGGTTATCAAACACCATTTA
GAACTGGTCGACAAAAGACTGGCGGCGCTGAATGCAACTCTAAGAATGGA
GAGGAGCCAAGAGACAGCTTTCGTGGTAACGGAGAATGCCTCGGAAAGAA
AAAAGAAGAAATGAAAGTTGAGATACCCTTGTACTTCACATAGCTACTTC
GGCCAATTCTCAAATGGACTTGGCGACTGTGGCAAATCTTATGCAACGCC
AGTCTTAAATTACACAGGTTACCGCCAGCAAGATTGTCCTACTTGGATG back to topprotein sequence of rna9572 >rna9572-protein ID=rna9572-protein|Name=rna9572|organism=Nannochloropsis gaditana|type=polypeptide|length=622bp
MHRTSSSSYLVLALLLLLATSSEPFSFGWLFSRNKLSKKQQAQNDYCYPW
LEGKKLVNARQSHEQSVDDVLLMCHDRISVGDKEMKMTEHRVNSNMDNEE
DEEKRRINRFLTWLRAHGARCDKIEWPSYATGSQIRGAVALDDINSNEDM
VSIPEPLLLTPDVALKDPDIGKVFEDNLEDFSDEDMLLILLMHERGKGET
SFFYPYLATLPRLPDTLLNWNEEGLSWLQDEGLSLEVFLRESQLTAHYTR
LVEEKLKAGWPGLFGEAPDDASDSESKGADPYSLENFRFAWLTIQARAFG
RRLPYSALIPLCDSFNHANVAVTYRLEPASVALNREGGRQREEDVRLEGQ
ILFPCPDSRSPPRVFHLSPSGSNRYKKGEEVFTSYGRRTNAELLLFYGFA
LLDNEHESVALSMPGIPSPPSWFQASLSALGTAGSVGGRARSMAEDVLRP
SHLLFAGATEVPSELVAYFRALTACCSMNEKDVVEQKLDYMQHFPCSRHE
RDAFSTLGAHMSASLAAFPTSIEEDEVELLASLAASKGSEGKRREVEPWE
NKGIRDAGVKGENASCRLAALTYRLTRKRVIKHHLELVDKRLAALNATLR
MERSQETAFVVTENASERKKKK back to topmRNA from alignment at KK037254.1:199277..201612- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9572 ID=rna9572|Name=rna9572|organism=Nannochloropsis gaditana|type=mRNA|length=2336bp|location=Sequence derived from alignment at KK037254.1:199277..201612- (Nannochloropsis gaditana)
CTCATGCATAACAGGGGGAAAGGAAACCGCTCCGGTGTTTCCCTATGCAC
CGGACCTCATCCTCTAGCTACCTCGTCCTCGCTTTACTTCTACTACTAGC
TACCAGTTCTGAACCGTTTTCTTTTGGCTGGCTTTTTTCGAGGAATAAAC
TGTCGAAGAAGGTATGCACCTTGTTTTCCCGGTCTCAAAGCAATCATAAT
TTCACATATGTCAACGTTTTTTGCCATTTTACATCACACAAGTGCGTTGC
ATAACCGTACTCTAGGTTACGCATTTCAGAGCTACTAGTGCTCATATGTA
TTGGAAATCTGCACAAGCTATAGCAGAACAGCCTTTCCATCAAATTATGG
TGGGCTCTATTGTGTTTTTGCTATGCCCTCTACTTTTGCACGTGTCAACT
CACGTCTCTACATGCTTTTCCTTTGCTCCATTTCCTTTCAACCTCCAAGC
AACAAGCTCAGAACGATTACTGCTACCCTTGGCTAGAAGGCAAGAAGCTG
GTAAATGCGAGACAGAGTCATGAGCAATCTGTAGATGACGTACTTTTAAT
GTGCCATGATCGTATCTCAGTTGGTGACAAAGAAATGAAAATGACAGAGC
ACCGTGTGAACAGCAACATGGATAACGAAGAAGACGAAGAGAAACGGCGC
ATAAATCGATTTCTGACTTGGCTACGAGCACATGGCGCGCGTTGTGACAA
GATTGAGTGGCCCTCCTACGCCACTGGCAGCCAGATTCGGGGTGCCGTCG
CCCTGGACGACATCAACAGCAATGAGGACATGGTCAGCATTCCTGAGCCC
CTTCTTCTCACTCCGGACGTAGCTTTGAAGGACCCCGACATTGGCAAAGT
CTTCGAAGATAATCTGGAGGACTTTTCAGATGAGGACATGCTGCTGATCC
TCCTGATGCATGAACGCGGCAAAGGGGAGACATCCTTCTTCTATCCCTAC
CTAGCCACCTTGCCCCGCCTGCCCGACACCCTCCTGAACTGGAACGAAGA
AGGCTTATCCTGGCTACAGGATGAGGGCCTAAGCTTGGAGGTCTTCTTGC
GGGAGAGCCAGCTGACCGCTCACTACACCAGGCTGGTTGAGGAGAAGCTG
AAGGCGGGATGGCCGGGGCTGTTTGGTGAAGCCCCAGACGACGCGTCCGA
CAGCGAGAGCAAGGGAGCCGACCCATATTCCCTGGAGAATTTCAGGTTTG
CCTGGCTGACTATCCAGGCGCGGGCGTTCGGGCGACGACTGCCGTACTCG
GCCCTGATTCCGCTTTGCGACTCCTTCAACCACGCAAACGTCGCGGTCAC
GTACAGGCTGGAGCCGGCGTCCGTCGCTCTGAACAGAGAGGGCGGGAGGC
AGAGAGAAGAGGATGTGCGCTTGGAAGGACAGATACTATTTCCCTGTCCT
GATTCCAGATCGCCGCCGCGCGTCTTTCACCTGTCCCCCAGCGGAAGCAA
CCGCTACAAGAAAGGAGAGGAGGTTTTCACGTCCTACGGGCGACGCACGA
ACGCGGAGCTCCTCCTTTTCTATGGCTTCGCGCTTCTCGACAATGAGCAC
GAGTCTGTGGCCTTAAGTATGCCTGGTATCCCCTCCCCACCTTCTTGGTT
TCAGGCCTCCCTCTCGGCGCTGGGCACAGCTGGCAGCGTGGGCGGGAGGG
CCCGGTCCATGGCCGAGGATGTGCTGCGGCCGTCGCACTTACTCTTCGCG
GGAGCTACAGAAGTGCCGAGTGAGCTGGTTGCCTATTTTCGAGCGCTGAC
TGCTTGTTGCAGCATGAATGAAAAGGATGTTGTGGAGCAGAAGCTCGATT
ACATGCAGCATTTCCCCTGCTCACGGCACGAGAGGGACGCCTTTTCTACC
TTGGGGGCCCACATGAGTGCCTCGTTGGCAGCTTTCCCCACCTCAATCGA
GGAGGATGAAGTAGAGCTCCTTGCCAGTTTGGCCGCGTCTAAAGGCAGTG
AAGGAAAACGACGGGAAGTAGAGCCATGGGAAAACAAAGGGATCCGTGAT
GCAGGGGTCAAGGGGGAGAATGCAAGTTGTCGACTCGCGGCTCTTACATA
CCGACTAACTCGGAAGCGGGTTATCAAACACCATTTAGAACTGGTCGACA
AAAGACTGGCGGCGCTGAATGCAACTCTAAGAATGGAGAGGAGCCAAGAG
ACAGCTTTCGTGGTAACGGAGAATGCCTCGGAAAGAAAAAAGAAGAAATG
AAAGTTGAGATACCCTTGTACTTCACATAGCTACTTCGGCCAATTCTCAA
ATGGACTTGGCGACTGTGGCAAATCTTATGCAACGCCAGTCTTAAATTAC
ACAGGTTACCGCCAGCAAGATTGTCCTACTTGGATG back to topCoding sequence (CDS) from alignment at KK037254.1:199277..201612- >rna9572 ID=rna9572|Name=rna9572|organism=Nannochloropsis gaditana|type=CDS|length=3738bp|location=Sequence derived from alignment at KK037254.1:199277..201612- (Nannochloropsis gaditana)
CAACAAGCTCAGAACGATTACTGCTACCCTTGGCTAGAAGGCAAGAAGCT
GGTAAATGCGAGACAGAGTCATGAGCAATCTGTAGATGACGTACTTTTAA
TGTGCCATGATCGTATCTCAGTTGGTGACAAAGAAATGAAAATGACAGAG
CACCGTGTGAACAGCAACATGGATAACGAAGAAGACGAAGAGAAACGGCG
CATAAATCGATTTCTGACTTGGCTACGAGCACATGGCGCGCGTTGTGACA
AGATTGAGTGGCCCTCCTACGCCACTGGCAGCCAGATTCGGGGTGCCGTC
GCCCTGGACGACATCAACAGCAATGAGGACATGGTCAGCATTCCTGAGCC
CCTTCTTCTCACTCCGGACGTAGCTTTGAAGGACCCCGACATTGGCAAAG
TCTTCGAAGATAATCTGGAGGACTTTTCAGATGAGGACATGCTGCTGATC
CTCCTGATGCATGAACGCGGCAAAGGGGAGACATCCTTCTTCTATCCCTA
CCTAGCCACCTTGCCCCGCCTGCCCGACACCCTCCTGAACTGGAACGAAG
AAGGCTTATCCTGGCTACAGGATGAGGGCCTAAGCTTGGAGGTCTTCTTG
CGGGAGAGCCAGCTGACCGCTCACTACACCAGGCTGGTTGAGGAGAAGCT
GAAGGCGGGATGGCCGGGGCTGTTTGGTGAAGCCCCAGACGACGCGTCCG
ACAGCGAGAGCAAGGGAGCCGACCCATATTCCCTGGAGAATTTCAGGTTT
GCCTGGCTGACTATCCAGGCGCGGGCGTTCGGGCGACGACTGCCGTACTC
GGCCCTGATTCCGCTTTGCGACTCCTTCAACCACGCAAACGTCGCGGTCA
CGTACAGGCTGGAGCCGGCGTCCGTCGCTCTGAACAGAGAGGGCGGGAGG
CAGAGAGAAGAGGATGTGCGCTTGGAAGGACAGATACTATTTCCCTGTCC
TGATTCCAGATCGCCGCCGCGCGTCTTTCACCTGTCCCCCAGCGGAAGCA
ACCGCTACAAGAAAGGAGAGGAGGTTTTCACGTCCTACGGGCGACGCACG
AACGCGGAGCTCCTCCTTTTCTATGGCTTCGCGCTTCTCGACAATGAGCA
CGAGTCTGTGGCCTTAAGTATGCCTGGTATCCCCTCCCCACCTTCTTGGT
TTCAGGCCTCCCTCTCGGCGCTGGGCACAGCTGGCAGCGTGGGCGGGAGG
GCCCGGTCCATGGCCGAGGATGTGCTGCGGCCGTCGCACTTACTCTTCGC
GGGAGCTACAGAAGTGCCGAGTGAGCTGGTTGCCTATTTTCGAGCGCTGA
CTGCTTGTTGCAGCATGAATGAAAAGGATGTTGTGGAGCAGAAGCTCGAT
TACATGCAGCATTTCCCCTGCTCACGGCACGAGAGGGACGCCTTTTCTAC
CTTGGGGGCCCACATGAGTGCCTCGTTGGCAGCTTTCCCCACCTCAATCG
AGGAGGATGAAGTAGAGCTCCTTGCCAGTTTGGCCGCGTCTAAAGGCAGT
GAAGGAAAACGACGGGAAGTAGAGCCATGGGAAAACAAAGGGATCCGTGA
TGCAGGGGTCAAGGGGGAGAATGCAAGTTGTCGACTCGCGGCTCTTACAT
ACCGACTAACTCGGAAGCGGGTTATCAAACACCATTTAGAACTGGTCGAC
AAAAGACTGGCGGCGCTGAATGCAACTCTAAGAATGGAGAGGAGCCAAGA
GACAGCTTTCGTGGTAACGGAGAATGCCTCGGAAAGAAAAAAGAAGAAAT
GAATGCACCGGACCTCATCCTCTAGCTACCTCGTCCTCGCTTTACTTCTA
CTACTAGCTACCAGTTCTGAACCGTTTTCTTTTGGCTGGCTTTTTTCGAG
GAATAAACTGTCGAAGAAGCAACAAGCTCAGAACGATTACTGCTACCCTT
GGCTAGAAGGCAAGAAGCTGGTAAATGCGAGACAGAGTCATGAGCAATCT
GTAGATGACGTACTTTTAATGTGCCATGATCGTATCTCAGTTGGTGACAA
AGAAATGAAAATGACAGAGCACCGTGTGAACAGCAACATGGATAACGAAG
AAGACGAAGAGAAACGGCGCATAAATCGATTTCTGACTTGGCTACGAGCA
CATGGCGCGCGTTGTGACAAGATTGAGTGGCCCTCCTACGCCACTGGCAG
CCAGATTCGGGGTGCCGTCGCCCTGGACGACATCAACAGCAATGAGGACA
TGGTCAGCATTCCTGAGCCCCTTCTTCTCACTCCGGACGTAGCTTTGAAG
GACCCCGACATTGGCAAAGTCTTCGAAGATAATCTGGAGGACTTTTCAGA
TGAGGACATGCTGCTGATCCTCCTGATGCATGAACGCGGCAAAGGGGAGA
CATCCTTCTTCTATCCCTACCTAGCCACCTTGCCCCGCCTGCCCGACACC
CTCCTGAACTGGAACGAAGAAGGCTTATCCTGGCTACAGGATGAGGGCCT
AAGCTTGGAGGTCTTCTTGCGGGAGAGCCAGCTGACCGCTCACTACACCA
GGCTGGTTGAGGAGAAGCTGAAGGCGGGATGGCCGGGGCTGTTTGGTGAA
GCCCCAGACGACGCGTCCGACAGCGAGAGCAAGGGAGCCGACCCATATTC
CCTGGAGAATTTCAGGTTTGCCTGGCTGACTATCCAGGCGCGGGCGTTCG
GGCGACGACTGCCGTACTCGGCCCTGATTCCGCTTTGCGACTCCTTCAAC
CACGCAAACGTCGCGGTCACGTACAGGCTGGAGCCGGCGTCCGTCGCTCT
GAACAGAGAGGGCGGGAGGCAGAGAGAAGAGGATGTGCGCTTGGAAGGAC
AGATACTATTTCCCTGTCCTGATTCCAGATCGCCGCCGCGCGTCTTTCAC
CTGTCCCCCAGCGGAAGCAACCGCTACAAGAAAGGAGAGGAGGTTTTCAC
GTCCTACGGGCGACGCACGAACGCGGAGCTCCTCCTTTTCTATGGCTTCG
CGCTTCTCGACAATGAGCACGAGTCTGTGGCCTTAAGTATGCCTGGTATC
CCCTCCCCACCTTCTTGGTTTCAGGCCTCCCTCTCGGCGCTGGGCACAGC
TGGCAGCGTGGGCGGGAGGGCCCGGTCCATGGCCGAGGATGTGCTGCGGC
CGTCGCACTTACTCTTCGCGGGAGCTACAGAAGTGCCGAGTGAGCTGGTT
GCCTATTTTCGAGCGCTGACTGCTTGTTGCAGCATGAATGAAAAGGATGT
TGTGGAGCAGAAGCTCGATTACATGCAGCATTTCCCCTGCTCACGGCACG
AGAGGGACGCCTTTTCTACCTTGGGGGCCCACATGAGTGCCTCGTTGGCA
GCTTTCCCCACCTCAATCGAGGAGGATGAAGTAGAGCTCCTTGCCAGTTT
GGCCGCGTCTAAAGGCAGTGAAGGAAAACGACGGGAAGTAGAGCCATGGG
AAAACAAAGGGATCCGTGATGCAGGGGTCAAGGGGGAGAATGCAAGTTGT
CGACTCGCGGCTCTTACATACCGACTAACTCGGAAGCGGGTTATCAAACA
CCATTTAGAACTGGTCGACAAAAGACTGGCGGCGCTGAATGCAACTCTAA
GAATGGAGAGGAGCCAAGAGACAGCTTTCGTGGTAACGGAGAATGCCTCG
GAAAGAAAAAAGAAGAAATGAATGCACCGGACCTCATCCTCTAGCTACCT
CGTCCTCGCTTTACTTCTACTACTAGCTACCAGTTCTGAACCGTTTTCTT
TTGGCTGGCTTTTTTCGAGGAATAAACTGTCGAAGAAG back to top
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