rna9566, rna9566 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9566
Unique Name	rna9566
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1885
Alignment location	KK037254.1:187842..190758 +

Link to JBrowse

Properties


Property Name	Value
Product	poly binding cytoplasmic isoform cra_c
Orig transcript id	gnl\|cribi\|Naga_100041g5.3698.mrna
Orig protein id	gnl\|cribi\|Naga_100041g5.3698
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:187842..190758 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g5	gene9287	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9566	rna9566-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21128.1	cds9535	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:187842..190758+
coding sequence from alignment at KK037254.1:187842..190758+

mRNA sequence

>rna9566 ID=rna9566|Name=rna9566|organism=Nannochloropsis gaditana|type=mRNA|length=1885bp
CCCGGACGCACACACATTCACACAGGCACGCACGCGCAGACGGGCTGCGT
ATGATGACCAACGGGCATGCCTCCCTACCGGCCACGCCGGCGTCACCTTT
TAAGGAGGGAAGGGCACTCTGGAGTATCACCGGGAAGCTTGAGGGGCGGA
CGAGCGAGGGGAAGGAGGCGTTGGACTCTTTGCACGACAATGCCATGGAG
TACATGCGTTCATGTTTCAACACTGCAAAGCGACGTCTCACCGAAGACAG
CAGTCTGTGCGAGAGGAGTCCGCAACGGAAAGGTACCACGGCGCCCGAGA
ATACTCCTACTTCCGCGACAGGGAGTGATTGGTCAATTAAAAAACAAAGA
AGATCCGTGGCAGAAGCCGAACAAATGGCACTCGTCAAAGCAAAGGTTGC
TCTCTTTGAAAGCTACAGAAGCGCAACGACACATAAGCATTCAAGTCCCA
GCACCATAGTCTCTGATCCTGTCTCCGCCATCGCCATAACCCCCAAGAAA
AGCATACGCCTCACCCCAAGCAAGAGCGCCAGCGACAGTCCCAGTACCAC
CAGCTACCACGCGGTATTCCCAGGCTTGAATCTAGGGGAGACCATGACGC
TGGCCTCAACCTCTGCGCGAAGCTTCCAGATCTCCGTGTCGCGCATACCG
GAGGAGGCGGAAGACGAGGGGGCGGGCGAGGAGACTTCTCGGGAGGGGAG
AGGGGCGGCGGGTGCTACCTTCAATGCCGGGAAGCCCTTCCGTGGAGCCT
TACGGGAATCCCCCACGCTGAGGCAGTCGCTGCAACCCTCGCTCGGACTA
CCGGCGCATCATGCGCCCAAGACTCTGGAAGCAGCGAGGGGGGGACCCGG
TCCTGGGGGAGCCGGTGGACGCACGACGCCCGACCAGCCGCTGACCGCCC
ATCACATTACGCGGGCCATGAAAGGGCTCCAGCTCACTGAAATTCCCGAG
AGCTCTTCCATAGAGCCTGGGAAGGGGTCAGACAAGGGGAAGCTGGGCGA
GGGAGGCGAAGGCGGAGGGCTCATCGAGACGGGCCCGGCCCCCATCATCG
AATGTAACGGCAGTGGCGTGCACCCGCTCGAAGGGACACGACCGGCGTCG
CACTGTAGTAGCGGTGCGGGCGGCGTGGGAGGCTTCCTGGGCATTGTCCA
GAAGACCCTGGGACTGAGCTGGCAATGTGCCGCCCTCCCTCCCACTCACA
CCTCTGCCATCAACACGATGGCGAGCTCCACCAGCTCGCCCTTGGAGCCG
CTGCCTCCTTTGGACCCCGCGGACACATACCCGATGTCCGACAGCGATGA
GGAGGGAAGACCGCTGGGGGAGGATGTGGTCGGCAGTGACGAGGAGGCCT
GGGACAGGCGACGAAGGTCGGCCAAGAAGATCCCCGATTGGGCCCGCGGC
ACCACGCTAGCCGCTGCCTTGGATAGGCAATTCACGACCGATCCCGCCAC
TTGGGTGGACCCGGACACCATCTTCCCCGAGGTGCCGCCCACATGTAATT
TGGAAGAAATTTTCAAGGTTCGCAAAAAACGGTACTACAAACGGACCAGT
AGTGGAATGTGGGAAAAGGATGGATTGACTCCCGTGGAGAGAATGACTTA
CAGGCGTGCGATGGCTTGTGAGCGGAAAGGGGAAGAGGTCTCAGTAAATG
GAGGAAACAGCAGTCGGGTGGGGGTTAGCAACATAAGCATTGTGGGCAAG
AAGGAATAAATATCTGACCGACGTGTATCTGGAACAAAATATGCGCCGTT
TGAAACATATAAGTTATCTTATTCATCTGAAGGGTTTTATGTGATATCAT
GGCGGGAGAGTTCGAAAAAGTGAACTCATACAGGAAGTGACGCATAGCTG
TACAACATTGAAAAGTAGACGTGATTCGACCACTC

protein sequence of rna9566

>rna9566-protein ID=rna9566-protein|Name=rna9566|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MPPHTSLIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDSAEGVVV
FVGNLPWSVTSEALQELFKEYNPLDVHVKTNMAGRSRGFALVKFTDAEVA
GVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLT
NLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEAL
NAINTLNKTVVRQRPISMKFYSTTGGRRT

mRNA from alignment at KK037254.1:187842..190758+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9566 ID=rna9566|Name=rna9566|organism=Nannochloropsis gaditana|type=mRNA|length=2917bp|location=Sequence derived from alignment at KK037254.1:187842..190758+ (Nannochloropsis gaditana)
GCGTGCATCTCAGGGCTGGAGGCGCGATGAAATCCCAATCGACACAAGAA
GAGCCCTCGCCAGGCTGAGAGAAAGCCGAACATTCATCCGCGGACAAAAC
GGATGCCTTTTCACGCGTTCTACCAACCATTCTCCGCACAAGGCGCAGCA
GGGTGGCGACTAAgtcgaggagaagctgcTAGATCTGAATATGGCAGGTG
AGTAGCCAACTGAATCTGAGATCGAAGTTCGGCGGTGTTTAtctggggag
aaggaggacaagattTTGTGCTCTTTCCAGATGACAGGGCGAGCGTCGTG
GGGACAGTGTTTTTTTATATTGCTGCGGCCCTCGTAGACCATGTCAAGGG
ACTTGTTTAGTACAATGTTCATAGAGCTTATCATGTCTCGGTAGAGATCC
TggtctttctctcccatACCGGGAGACATGGAACACGGCGGGGCGTGCTG
CAGCAGACATTTGCTCTTCCATGATTTTCATCCTGACCACTGGATGTGCT
ACCACATTCCTTGCCCTCAATGTTGTAACTTACCTATCTACATGCCACAG
CTGCAGGGACGGCGACGAACGTGGTGTTTGTTGGCAATTTGGCCTGGAGC
ACGTCGGAGGAGAGCCTGCGAGCCCTGGCCTCCACGGTTGGACCAGTACT
GTCCGTGCAGATCCAGACTCATGCCGACACTGGCCGCTCAAAGGGATGGG
GGTGAGTCCATCGAGGGTGGAGTGGAGTGGATggccgaggggagggaggc
tgttGTATAGCTTgctcggggggagggccttctGTTGTCAGAACCCCGAT
GCGCCAAATGGGTGGAGAAGAGCCTGGCGTCAATCAATTTGCACTGCGAG
AGGGACATGGGGAAGATTTAGAGGACTGAGGTTTTAAAAGCAAGGATTTC
TCACCGCGCTTGAGAAGCCCATGCCGGGTCGACGGATGTGGGTCCTCTCT
GCACGGGCATTTGCGCACCATTTCATGCACAAGTCTGAAAAAGATCTGCC
AACTCGGAGCAGGCAGCTCTTGCTTAGGATCACTTCTTCATTCATTCATC
TTCTATGCCACCCCATACCAGCCTCATCCATTACAGTGCCCCGGAGgtcg
ccgccaaggccatcgAGGCCTTGAACGGACAGGAGCTAGACAACAGGAAG
CTCCACGTGCGGGAGGATCGCTCCTATCTGGactcggcggagggggtggt
ggtcTTCGTAGGGAATCTGCCGTGGTCGGTTACGAGCGAGGCGCTGCAGG
AGCTCTTCAAGGAGTACAACCCGCTGGACGTGCACGTGAAGACGAATATG
GCGGGCCGGAGCAGGGGCTTCGCGTTGGTAAAGTTCACGGACGCCGAGGT
GGCGGGAGTGGCCATCACGAACCTGAACGGCTATCAGTTGGAGGGCAGGC
CCATCCAGGTCCGGTTCGACCGGCAGcaggcagaggcgggggaaggggag
ggcgtgggcaaCGGGGGCCCGGTGGGCGGCCTGACGGACCGGGTGACGCT
GACAAACCTGGCCTggacgacggaggagggggagctaGTGAGCCTGCTCT
CCAAGGCAGGGACGGTGGTGGGCGTAGAGATCCAGCGGCATGCGGACACG
GGGCGAAGCAAGGGGTGGGCGATCGCCACCTTTGCCAGTCGAGACGAGGC
CTTGAACGCGATCAACACTCTGAACAAGACGGTGGTGCGACAGCGACCGA
TTAGCATGAAGTTTTACTCGACCACTGGCGGGCGGCGGACCTGAGGGGGT
CCCCCTCTGTCTTCCTACGCTTTCGGCGCCCGTGGTGGgtacgggagggg
agggagggggggggggagatgggggggttagaggcgccgggggaaggtgg
tgaaAGCTGAGGACGACAACTAGTGCATTCGAGGAAATGAGGGTGAGTTT
GGAAAGAAATCGCTGAAGTTCTAGTGCCTGGCTGCGGTTTcagaaaaagg
gagacacaggcgggggggcggggagggctgGGTCTGCGAAAACGAGGTGG
TCACTGCGGTCTCACAATGCTAGTTTGTCGTCGAATGTGACGGCGTTTTG
CGGAGATATGCGACCACAATGGAGCTTTTAGATGGGGGCTTAATGAATTG
CGGGAAGATAGGGCAGGGTCTCGCTGTAGTAGCCGGGACGGTTTTTTTGG
GTGGGGCTAGTGCATTCTGAAAGCGATAATGAAGGAAGAGTAAGGCCGAC
GAAGAGAACATTGCGACGAAAAAATCTGCTGAgatggagaaaagagaggc
aagaggacggagatggCAGACATTGGAGCATGCCAATGAATGACCACGCA
GCGGTGAGACACAGCGGAACGCCGTCGGAGCCGAGGGCTTGAAGATTTGG
AAGGAGATGACGTAGGAGGAGGCGCATCGAATGGCCTCCGCGAAATTGTT
TGCTTAATGCATGTTGCCCTTATCAGCGAACACTTGCTCCCGGGGACGAC
CGTGTATAGAGATTGGGCGGGATAGGGACACCTGGAGAAGAGGATCTTAT
TGCCAGATGCTAATTCGGAAGCAATGGACTTATCGCACCTTGCTTCATTT
TGAAATGaacttttttcccccccccgtgtcTTTCGTCACAGCATACCACT
TTTTTAAAGAGATTGATCACCAGCGACGTCCGACTCGAAAAAGCATCAAA
CTTTTATCCCCTGACGCTTTTCACACCTTCAAACACCGAAAGGACTCTTA
AATAGATCGCACCATCCTTGACTGCAATTCTGTTCCTCTGAACTGGAACC
AATCTTCCGGCGTCGGAAACGTGTTCGGGATGCGCCTCTTCACTCTCCTT
CCCTAGTCGCCGGACCAACGATTCGCGCAGAGCGTGCACCTGTAAAATGT
CGTCATGGGCTCATCTGCGGATCGTATCTGCATTTGCACGAAGAATGCCT
CCATGCTATCGCAAAAA

Coding sequence (CDS) from alignment at KK037254.1:187842..190758+

>rna9566 ID=rna9566|Name=rna9566|organism=Nannochloropsis gaditana|type=CDS|length=690bp|location=Sequence derived from alignment at KK037254.1:187842..190758+ (Nannochloropsis gaditana)
ATGCCACCCCATACCAGCCTCATCCATTACAGTGCCCCGGAGgtcgccgc
caaggccatcgAGGCCTTGAACGGACAGGAGCTAGACAACAGGAAGCTCC
ACGTGCGGGAGGATCGCTCCTATCTGGactcggcggagggggtggtggtc
TTCGTAGGGAATCTGCCGTGGTCGGTTACGAGCGAGGCGCTGCAGGAGCT
CTTCAAGGAGTACAACCCGCTGGACGTGCACGTGAAGACGAATATGGCGG
GCCGGAGCAGGGGCTTCGCGTTGGTAAAGTTCACGGACGCCGAGGTGGCG
GGAGTGGCCATCACGAACCTGAACGGCTATCAGTTGGAGGGCAGGCCCAT
CCAGGTCCGGTTCGACCGGCAGcaggcagaggcgggggaaggggagggcg
tgggcaaCGGGGGCCCGGTGGGCGGCCTGACGGACCGGGTGACGCTGACA
AACCTGGCCTggacgacggaggagggggagctaGTGAGCCTGCTCTCCAA
GGCAGGGACGGTGGTGGGCGTAGAGATCCAGCGGCATGCGGACACGGGGC
GAAGCAAGGGGTGGGCGATCGCCACCTTTGCCAGTCGAGACGAGGCCTTG
AACGCGATCAACACTCTGAACAAGACGGTGGTGCGACAGCGACCGATTAG
CATGAAGTTTTACTCGACCACTGGCGGGCGGCGGACCTGA

Synonyms

Publications