EWM21128.1, cds9535 (CDS) Nannochloropsis gaditana

Overview
NameEWM21128.1
Unique Namecds9535
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:188896..189585 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21128.1
Productpoly binding cytoplasmic isoform cra_c
Orig transcript idgnl|cribi|Naga_100041g5.3698.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:188896..189585 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM21128.1 vs. NCBI_GenBank
Match: gi|585101195|gb|EWM21128.1| (poly binding cytoplasmic isoform cra_c [Nannochloropsis gaditana])

HSP 1 Score: 468.774 bits (1205), Expect = 3.211e-167
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0
Query:    1 MPPHTSLIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDSAEGVVVFVGNLPWSVTSEALQELFKEYNPLDVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKFYSTTGGRRT 229
            MPPHTSLIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDSAEGVVVFVGNLPWSVTSEALQELFKEYNPLDVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKFYSTTGGRRT
Sbjct:    1 MPPHTSLIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDSAEGVVVFVGNLPWSVTSEALQELFKEYNPLDVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKFYSTTGGRRT 229          
BLAST of EWM21128.1 vs. NCBI_GenBank
Match: gi|585102973|gb|EWM22467.1| (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 191.815 bits (486), Expect = 3.223e-56
Identity = 93/216 (43.06%), Postives = 142/216 (65.74%), Query Frame = 0
Query:    6 SLIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDSAEGVVVFVGNLPWSVTSEALQELFKEYNPLDVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKFY 221
            +L+ +   E A++A+E L G+E++ R L+VREDR+ ++  EG VVFVGNLPW +T+  L+ +F E++P DVH+KTNM+GRSRGF L++F  +E A  AI  ++G  ++ R I VR DR   E      +G+       +D VT  N+ W T +  L   +++AG VV  +IQRHADT RSKGWAI  + + +E  NA+ +L++TV+  R ++++FY
Sbjct:   47 ALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEM-----MGHSPATMEASDTVTCGNIPWHTGDEVLACHMAQAGRVVSCQIQRHADTLRSKGWAIIRYVTVEEGTNAVRSLHRTVLDDRTLNVRFY 257          

HSP 2 Score: 76.2554 bits (186), Expect = 1.088e-12
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 0
Query:   50 VFVGNLPWSVTSEALQELFKEY-NPLDVHVKTNM-AGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKF 220
            VFVGNL W  T+++L  + +     L V V+ +   GRS+G+ALV F  AE A  A+  L G ++EGRP+ VR DR + E  EG  V  G             NL W      L ++ S+  +   V I+ +  +GRS+G+ +  F S +EA  AI  ++   V++R I ++ 
Sbjct:    5 VFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVG-------------NLPWDMTASGLRTVFSEF-SPYDVHIKTNM-SGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRL 162          

HSP 3 Score: 67.0106 bits (162), Expect = 2.202e-9
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 0
Query:  143 LTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMK 219
            ++  V + NL+W T    L +++  AG V+GVE+Q H+DTGRSKGWA+ TF + ++A  A+  L    V  RP+ ++
Sbjct:    1 MSKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVR 77          
BLAST of EWM21128.1 vs. NCBI_GenBank
Match: gi|299471941|emb|CBN79621.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 160.614 bits (405), Expect = 4.946e-44
Identity = 93/265 (35.09%), Postives = 133/265 (50.19%), Query Frame = 0
Query:    7 LIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDSAEGVVVFVGNLPWSVTSEALQELFKEYNPLDVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQ---------------------------------------------------QAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKF 220
            L+ Y+ P +A  AIE LN  +L  R +H+R DR  ++++ G  VFVGNLPWS T E LQ++F  Y P D HVKTNMAGRSRGF +++F   E+   AI+ +  YQ++ RPIQVR DR+                                                   +   GE E    GG  GG    V + NLAW T + +L++    AG VV   +Q  A +GRSKGW +  ++S  E   A+  LN T++ +R ++++ 
Sbjct:   97 LVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIGGGGEGGGGGGGGGRRGRGSSGGGGGGGGGGGGGDGGGGGGGEPCPGFGGKPRGGEKEEKLFGG-GGGDACTVFVGNLAWGTTDDDLLATFQTAGAVVSAHVQ-IAPSGRSKGWGLVKYSSPTETETAVTELNNTMLHERRLTVRL 359          

HSP 2 Score: 79.337 bits (194), Expect = 9.781e-14
Identity = 56/175 (32.00%), Postives = 84/175 (48.00%), Query Frame = 0
Query:   50 VFVGNLPWSVTSEALQELFKEYNPL-DVHVKTNM-AGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADT---GRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMK 219
            VFVGNL W  TSE L+        +    V+++  +GRS+G+ LV + D  +A  AI  LN   L GRPI +R DR++ EA            GG    V + NL W+T + +L  + +            H  T   GRS+G+ I  FA+ +    AI+ +    +  RPI ++
Sbjct:   54 VFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEAS-----------GGFP--VFVGNLPWSTTDEDLQQIFAPY-----EPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVR 210          

HSP 3 Score: 60.4622 bits (145), Expect = 3.433e-7
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 0
Query:  147 VTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKF 220
            V + NL+W T   +L + +   G VV  E+Q HAD+GRSKGW + T+A    A  AI  LN   +  RPI ++ 
Sbjct:   54 VFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRL 127          
BLAST of EWM21128.1 vs. NCBI_GenBank
Match: gi|553179889|ref|XP_005852780.1| (hypothetical protein NGA_0682100 [Nannochloropsis gaditana CCMP526] >gi|422295750|gb|EKU23049.1| hypothetical protein NGA_0682100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 133.65 bits (335), Expect = 3.993e-35
Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = 0
Query:    6 SLIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDSAEGVVVFVGNLPWSVTSEALQELFKEYNPLDVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTT 156
            +L+ +   E A++A+E L G+E++ R L+VREDR+ ++  EG VVFVGNLPW +T+  L+ +F E++P DVH+KTNM+GRSRGF L++F  +E A  AI  ++G  ++ R I VR DR   E      +G+       +D VT  N+ W T
Sbjct:   47 ALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDRAHLEM-----MGHSPATMEASDTVTCGNIPWHT 192          

HSP 2 Score: 76.2554 bits (186), Expect = 2.712e-13
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 0
Query:   50 VFVGNLPWSVTSEALQELFKEYNP-LDVHVKTNM-AGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKF 220
            VFVGNL W  T+++L  + +     L V V+ +   GRS+G+ALV F  AE A  A+  L G ++EGRP+ VR DR + E  EG  V  G             NL W      L ++ S+  +   V I+ +  +GRS+G+ +  F S +EA  AI  ++   V++R I ++ 
Sbjct:    5 VFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVG-------------NLPWDMTASGLRTVFSEF-SPYDVHIKTNM-SGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRL 162          

HSP 3 Score: 66.6254 bits (161), Expect = 8.641e-10
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 0
Query:  143 LTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMK 219
            ++  V + NL+W T    L +++  AG V+GVE+Q H+DTGRSKGWA+ TF + ++A  A+  L    V  RP+ ++
Sbjct:    1 MSKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVR 77          
BLAST of EWM21128.1 vs. NCBI_GenBank
Match: gi|255089439|ref|XP_002506641.1| (predicted protein [Micromonas commoda] >gi|226521914|gb|ACO67899.1| predicted protein [Micromonas commoda])

HSP 1 Score: 115.161 bits (287), Expect = 1.836e-27
Identity = 74/232 (31.90%), Postives = 108/232 (46.55%), Query Frame = 0
Query:    7 LIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDSA-----------------EGVVVFVGNLPWSVTSEALQELFKEYNPL-DVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKF 220
            ++ YS    A  AI+ L+G  L +R + VRED++   SA                 +G   +VGNL W    E+L     +   +    V     GRS+G+ LV F   + A  AI  L+   L+GR I VR +R    A +  G   G P      ++ + NL W+T   +L  +  + GTV+  E   HADTGRSKGW    F +R++A  AI   N   +  RP+ +K 
Sbjct:   51 IVEYSNVNEAQVAIQTLDGHTLGDRNITVREDKAPTKSAPSKSGGNRSTIGDTPAADGCRCYVGNLAWETNEESLIAHCSQVGTVVQAEVAKQPGGRSKGWGLVDFETPDAANSAINTLHNSDLQGRSIIVRLERAGG-ANKSGGPNAGRPEASSGLQIVVRNLPWSTTSEDLRQVFQQVGTVIKAEAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGVELEHRPMQIKL 281          

HSP 2 Score: 105.916 bits (263), Expect = 6.652e-24
Identity = 63/185 (34.05%), Postives = 101/185 (54.59%), Query Frame = 0
Query:   50 VFVGNLPWSVTSEALQELFKEYNPLD-VHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLT----DRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKFYSTTGGRRT 229
            ++VGN+PWS T + L+ +F     +  V + T   GRSRG+ +V++++   A VAI  L+G+ L  R I VR D+   ++   +  GN   +G        R  + NLAW T E  L++  S+ GTVV  E+ +    GRSKGW +  F + D A +AINTL+ + ++ R I ++     G  ++
Sbjct:    9 LYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQGRSRGYGIVEYSNVNEAQVAIQTLDGHTLGDRNITVREDKAPTKSAPSKSGGNRSTIGDTPAADGCRCYVGNLAWETNEESLIAHCSQVGTVVQAEVAKQPG-GRSKGWGLVDFETPDAANSAINTLHNSDLQGRSIIVRLERAGGANKS 192          

HSP 3 Score: 74.3294 bits (181), Expect = 3.000e-12
Identity = 44/134 (32.84%), Postives = 69/134 (51.49%), Query Frame = 0
Query:    7 LIHYSAPEVAAKAIEALNGQELDNRKLHVREDRS------------YLDSAEGVVVFVGNLPWSVTSEALQELFKEYNPLD-----VHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDR 123
            L+ +  P+ A  AI  L+  +L  R + VR +R+              +++ G+ + V NLPWS TSE L+++F++   +       H  T   GRS+G+  V F   E A  AI   NG +LE RP+Q++ DR
Sbjct:  153 LVDFETPDAANSAINTLHNSDLQGRSIIVRLERAGGANKSGGPNAGRPEASSGLQIVVRNLPWSTTSEDLRQVFQQVGTVIKAEAVCHADT---GRSKGWGTVLFETREQAQAAIQGFNGVELEHRPMQIKLDR 283          
BLAST of EWM21128.1 vs. NCBI_GenBank
Match: gi|303284108|ref|XP_003061345.1| (hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla CCMP1545] >gi|226457696|gb|EEH54995.1| hypothetical protein MICPUCDRAFT_60999 [Micromonas pusilla CCMP1545])

HSP 1 Score: 110.923 bits (276), Expect = 1.270e-25
Identity = 77/246 (31.30%), Postives = 110/246 (44.72%), Query Frame = 0
Query:    7 LIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDS------------------------AEGVVVFVGNLPWSVTSEALQELFKEY-------NPLDVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGG-PVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKF 220
            ++ YS+   A  AI  L G  L +R L VRED +   +                        AEG   ++GNL W  T+E+L   F++Y       + ++  V     GRS+G+ LV F     A  AI  L+   L+GR I VR +R         G  N G P      ++ + NL WTT   +L  +  + G VV  +   HADTGRSKGW    F +R++A  AI   N   +  RP+ +K 
Sbjct:   52 IVEYSSAAEAQAAIAQLEGHTLGDRNLTVREDNAPTKTANSGGGSKSGGGRGSGNVMGETPAAEGCRCYIGNLAWETTAESLVGAFEDYPHFSSVGSVVNAEVAKQPGGRSKGWGLVDFESPAAAESAIATLHNSDLQGRSIIVRLERAGGATKGPGGGANAGRPEASSGLQIVVRNLPWTTTSEDLRQVFQQVGNVVKADAVCHADTGRSKGWGTVLFETREQAQAAIQGFNGVELESRPMQIKL 297          

HSP 2 Score: 71.2478 bits (173), Expect = 4.875e-11
Identity = 43/136 (31.62%), Postives = 69/136 (50.74%), Query Frame = 0
Query:    7 LIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYL--------------DSAEGVVVFVGNLPWSVTSEALQELFKEYNPLD-----VHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDR 123
            L+ + +P  A  AI  L+  +L  R + VR +R+                +++ G+ + V NLPW+ TSE L+++F++   +       H  T   GRS+G+  V F   E A  AI   NG +LE RP+Q++ DR
Sbjct:  167 LVDFESPAAAESAIATLHNSDLQGRSIIVRLERAGGATKGPGGGANAGRPEASSGLQIVVRNLPWTTTSEDLRQVFQQVGNVVKADAVCHADT---GRSKGWGTVLFETREQAQAAIQGFNGVELESRPMQIKLDR 299          

HSP 3 Score: 67.3958 bits (163), Expect = 1.098e-9
Identity = 58/191 (30.37%), Postives = 86/191 (45.03%), Query Frame = 0
Query:   50 VFVGNLPWSVTSEALQELFKEYNPL-DVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEG-------------VGNGGPVGGLTDRVTLTNLAWTTEEGELVSL------LSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKF 220
            ++VGNLPWS   + L+ +F     +  V +     GRSRG+ +V+++ A  A  AI  L G+ L  R + VR D    +     G             +G      G   R  + NLAW T    LV         S  G+VV  E+ +    GRSKGW +  F S   A +AI TL+ + ++ R I ++ 
Sbjct:   10 LYVGNLPWSTDVDELRAIFSSCGAITHVDIPKGRQGRSRGYGIVEYSSAAEAQAAIAQLEGHTLGDRNLTVREDNAPTKTANSGGGSKSGGGRGSGNVMGETPAAEGC--RCYIGNLAWETTAESLVGAFEDYPHFSSVGSVVNAEVAKQPG-GRSKGWGLVDFESPAAAESAIATLHNSDLQGRSIIVRL 197          
BLAST of EWM21128.1 vs. NCBI_GenBank
Match: gi|145354241|ref|XP_001421399.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144581636|gb|ABO99692.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 104.76 bits (260), Expect = 1.676e-23
Identity = 69/195 (35.38%), Postives = 98/195 (50.26%), Query Frame = 0
Query:   42 LDSAEGVVVFVGNLPWSVTSEALQELFKEYNPLD-VHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDR-----QQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAG-TVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKFYSTTGGRRT 229
            +D      ++VGN+PWS T E L+ELF E   +  V + T   GRSRG+ LV+F     A  A+T ++G  L  R I VR D+               V    P GG   R    NLAW T E  L S  +  G  VV  E+ R +  GRSKGWA+  FA+ +EA NAI  ++ + ++ R I ++      G+++
Sbjct:    3 VDGGSSARLYVGNIPWSTTIEDLRELFAECGGVTRVDIPTGRQGRSRGYGLVEFNSEAEAQAAVTRMDGTPLGDRTITVREDKAPTKAAGGAKKASASVLGDAPAGGDGCRCYFGNLAWETSEETLTSHCASFGVNVVQCEVARQSG-GRSKGWALVDFATPEEAQNAIEQMHNSEIQGRSIIVRVERPGAGQKS 196          

HSP 2 Score: 95.9005 bits (237), Expect = 3.385e-20
Identity = 69/234 (29.49%), Postives = 106/234 (45.30%), Query Frame = 0
Query:    7 LIHYSAPEVAAKAIEALNGQELDNRKLHVREDRS--------------YLDSA----EGVVVFVGNLPWSVTSEALQELFKEY--NPLDVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKF 220
            L+ +++   A  A+  ++G  L +R + VRED++               L  A    +G   + GNL W  + E L      +  N +   V     GRS+G+ALV F   E A  AI  ++  +++GR I VR +R    AG+        P      ++ + NL WTT   +L  +  + G VV      H DTGRSKGW    F +R++A  AI   N   +  RP+ +K 
Sbjct:   53 LVEFNSEAEAQAAVTRMDGTPLGDRTITVREDKAPTKAAGGAKKASASVLGDAPAGGDGCRCYFGNLAWETSEETLTSHCASFGVNVVQCEVARQSGGRSKGWALVDFATPEEAQNAIEQMHNSEIQGRSIIVRVER--PGAGQKSARVETRPENSSGLQIVVRNLPWTTTSEDLRQVFQQVGNVVNAVAVCHTDTGRSKGWGTVLFETREQAQAAIQGFNGVELEHRPMQIKL 284          

HSP 3 Score: 76.2554 bits (186), Expect = 6.720e-13
Identity = 44/134 (32.84%), Postives = 72/134 (53.73%), Query Frame = 0
Query:    6 SLIHYSAPEVAAKAIEALNGQELDNRKLHVREDR-----------SYLDSAEGVVVFVGNLPWSVTSEALQELFKEYNPLD-----VHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDR 123
            +L+ ++ PE A  AIE ++  E+  R + VR +R           +  +++ G+ + V NLPW+ TSE L+++F++   +       H  T   GRS+G+  V F   E A  AI   NG +LE RP+Q++ DR
Sbjct:  156 ALVDFATPEEAQNAIEQMHNSEIQGRSIIVRVERPGAGQKSARVETRPENSSGLQIVVRNLPWTTTSEDLRQVFQQVGNVVNAVAVCHTDT---GRSKGWGTVLFETREQAQAAIQGFNGVELEHRPMQIKLDR 286          
BLAST of EWM21128.1 vs. NCBI_GenBank
Match: gi|612397995|ref|XP_007514517.1| (predicted protein [Bathycoccus prasinos] >gi|412986331|emb|CCO14757.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 104.375 bits (259), Expect = 2.506e-23
Identity = 67/180 (37.22%), Postives = 96/180 (53.33%), Query Frame = 0
Query:   50 VFVGNLPWSVTSEALQELFKEYNPLDVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGG-PVGGLTD--------RVTLTNLAWTTEEGELVSLLSKAG-TVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMK 219
            ++VGN+PWS T E LQ LF +    ++ + T    RSRG+ALV F+D   A  A+  +NG+ L  R I VR D    +A +    G+GG PV   T+        R  + NLAW T+E  L+      G  V+  E+ R +  GRSKGWA+  FAS++ A   +  L+ T  R R I ++
Sbjct:   11 LYVGNIPWSTTVEELQGLFTDAE--NIEIPTGRQNRSRGYALVSFSDESAAQSAMQAMNGHALGDRNISVRADNPLPKAPKSSSRGSGGAPVQRPTNLPEAEEGCRCYVGNLAWETDEQALIEHCQTIGHPVLRCEVARQSG-GRSKGWALIDFASKEAADAGVKALHDTECRARSIIVR 187          

HSP 2 Score: 97.4413 bits (241), Expect = 9.900e-21
Identity = 67/239 (28.03%), Postives = 105/239 (43.93%), Query Frame = 0
Query:    6 SLIHYSAPEVAAKAIEALNGQELDNRKLHVREDR----------------------SYLDSAEGVVVFVGNLPWSVTSEALQELFKE--YNPLDVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEGVGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKF 220
            +L+ +S    A  A++A+NG  L +R + VR D                       +  ++ EG   +VGNL W    +AL E  +   +  L   V     GRS+G+AL+ F   E A   +  L+  +   R I VR +R    A   +      P      ++ + NL W+T   +L  +  + GTVV  +   H DTGRSKGW    F ++++A  AI   N   +  RP+ +K 
Sbjct:   49 ALVSFSDESAAQSAMQAMNGHALGDRNISVRADNPLPKAPKSSSRGSGGAPVQRPTNLPEAEEGCRCYVGNLAWETDEQALIEHCQTIGHPVLRCEVARQSGGRSKGWALIDFASKEAADAGVKALHDTECRARSIIVRAERPGGAAAT-KPPREIRPENSSGLQIVVRNLPWSTTSDDLRQVFQQVGTVVDAKSTCHDDTGRSKGWGTVLFETQEQAQAAIAGFNGVELEGRPMQIKI 286          

HSP 3 Score: 75.0998 bits (183), Expect = 1.739e-12
Identity = 44/133 (33.08%), Postives = 72/133 (54.14%), Query Frame = 0
Query:    6 SLIHYSAPEVAAKAIEALNGQELDNRKLHVREDRS------------YLDSAEGVVVFVGNLPWSVTSEALQELFKEYNPLDVHVKTNM---AGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDR 123
            +LI +++ E A   ++AL+  E   R + VR +R               +++ G+ + V NLPWS TS+ L+++F++   + V  K+      GRS+G+  V F   E A  AI   NG +LEGRP+Q++ DR
Sbjct:  157 ALIDFASKEAADAGVKALHDTECRARSIIVRAERPGGAAATKPPREIRPENSSGLQIVVRNLPWSTTSDDLRQVFQQVGTV-VDAKSTCHDDTGRSKGWGTVLFETQEQAQAAIAGFNGVELEGRPMQIKIDR 288          
BLAST of EWM21128.1 vs. NCBI_GenBank
Match: gi|936528378|emb|CDO54123.1| (similar to Saccharomyces cerevisiae YNL004W HRB1 Poly(A+) RNA-binding protein [Geotrichum candidum])

HSP 1 Score: 106.301 bits (264), Expect = 4.194e-23
Identity = 74/248 (29.84%), Postives = 117/248 (47.18%), Query Frame = 0
Query:    7 LIHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDSA-------------------EGVVVFVGNLPWSVTSEALQELFKEYNPL-DVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDR---------QQAEAGEGEGVGNGGPVGG-LTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKFYSTT 224
            ++ YS  E A KAI+ L   + D R++ VREDR   +S+                   +G  +F+ NLP+S   + L++LF+E   +    V TN  GRS+G   V F++   A +AI   NG++++GR ++VR DR             A E     +G    G +++ + + NL W T + +LV L    GTV   +IQ    +GRS G  +  F +   A  AI   +      RP+ + F S +
Sbjct:  149 IVEYSTREEAQKAIDKLTNLDFDGREIFVREDRETDNSSRGRHPPPPSSSRDRPPPPSDGSQLFIANLPYSAGWQDLKDLFREAGDIVRADVYTNNTGRSKGVGTVLFSNPNDAEIAIEKFNGFEMDGRALEVRVDRLVRGGPAPDASRPAPEPNAFTDGARGNGPMSETIFVDNLPWATTDNDLVELFQTVGTVERAQIQLEP-SGRSAGSGVVKFDTPASADIAIEKFHNYNYGNRPLKLSFVSYS 395          
BLAST of EWM21128.1 vs. NCBI_GenBank
Match: gi|1069841021|ref|XP_018213089.1| (hypothetical protein OGAPODRAFT_15196 [Ogataea polymorpha] >gi|1037332866|gb|OBA18412.1| hypothetical protein OGAPODRAFT_15196 [Ogataea polymorpha])

HSP 1 Score: 100.138 bits (248), Expect = 1.179e-21
Identity = 71/241 (29.46%), Postives = 111/241 (46.06%), Query Frame = 0
Query:    8 IHYSAPEVAAKAIEALNGQELDNRKLHVREDRSYLDS----------------AEGVVVFVGNLPWSVTSEALQELFKEYNPL-DVHVKTNMAGRSRGFALVKFTDAEVAGVAITNLNGYQLEGRPIQVRFDRQQAEAGEGEG-----------VGNGGPVGGLTDRVTLTNLAWTTEEGELVSLLSKAGTVVGVEIQRHADTGRSKGWAIATFASRDEALNAINTLNKTVVRQRPISMKF 220
            + ++  ++  +AI   +    + R++ VRED    +                  EG  VF+GNLP+SV  + L++LFK   P+    V+ +  GRS+GF  V F ++E A  AI + NGY ++GR I+VR  +Q  +  +G             VG G P     D +   NL W T E +L  L     +V   E+Q   D  R  G A+  F   D A+ A+N L+     +R + + F
Sbjct:    4 VEFANKDLVQEAISKFDRTMYEGREIFVREDLPPPEKENTGREERRRNAPPPLTEGYEVFIGNLPFSVRWQDLKDLFKSCGPIIRADVREDHRGRSKGFGTVIFENSEDADRAIADFNGYDMDGRRIEVRLGKQFNKEPQGAAESRNSEFVAGVVGQGEP----NDTIFADNLPWETSETDLYDLFGSIASVKRAELQ-FDDLNRPAGTAVVQFQELDGAIAAVNQLDNYEYGRRRLRVSF 239          
The following BLAST results are available for this feature:
BLAST of EWM21128.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101195|gb|EWM21128.1|3.211e-167100.00poly binding cytoplasmic isoform cra_c [Nannochlor... [more]
gi|585102973|gb|EWM22467.1|3.223e-5643.06rna binding protein [Nannochloropsis gaditana][more]
gi|299471941|emb|CBN79621.1|4.946e-4435.09conserved unknown protein [Ectocarpus siliculosus][more]
gi|553179889|ref|XP_005852780.1|3.993e-3543.05hypothetical protein NGA_0682100 [Nannochloropsis ... [more]
gi|255089439|ref|XP_002506641.1|1.836e-2731.90predicted protein [Micromonas commoda] >gi|2265219... [more]
gi|303284108|ref|XP_003061345.1|1.270e-2531.30hypothetical protein MICPUCDRAFT_60999 [Micromonas... [more]
gi|145354241|ref|XP_001421399.1|1.676e-2335.38predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|612397995|ref|XP_007514517.1|2.506e-2337.22predicted protein [Bathycoccus prasinos] >gi|41298... [more]
gi|936528378|emb|CDO54123.1|4.194e-2329.84similar to Saccharomyces cerevisiae YNL004W HRB1 P... [more]
gi|1069841021|ref|XP_018213089.1|1.179e-2129.46hypothetical protein OGAPODRAFT_15196 [Ogataea pol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9566rna9566Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications