rna9559, rna9559 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9559
Unique Name	rna9559
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1889
Alignment location	KK037254.1:168081..170836 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100319g3.4371.mrna
Orig protein id	gnl\|cribi\|Naga_100319g3.4371
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:168081..170836 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100319g3	gene9280	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21149.1	cds9528	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9559	rna9559-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:168081..170836-
coding sequence from alignment at KK037254.1:168081..170836-

mRNA sequence

>rna9559 ID=rna9559|Name=rna9559|organism=Nannochloropsis gaditana|type=mRNA|length=1889bp
TTCGTCGTCCGTCGATCATCGGGCGAAGCAGGACTACGCAACAAGGAAAA
ATGTCACATGCAAAACCCCGCAGGGCTGTTATTTCTGTGAAAAAGCACCA
CAGAGGTAAAAAAACAGTGCACTGAATTACTCTTCTTGCGTCAAATTTTG
CTTGTCGGACTCCTACGCCTCTACTGCTTCAAAGCCTTCATCGAATTCTT
CCAGCGTTCCTCTTTCGCCAAGTTTCATTTCCCTGTCTGATGATCAGCAC
TCATTTCTTACTATAACATACAGTTTTTGGAAACTATGGACGGGCAGCTG
ATTGAAAAGAAGGATTGCTCAGCTGCAGTCGCCGCCGCGCTTCCGGAAGC
GAAATCTTTGGCCGATGCAGGCAAGCTGGCTGAAGCTGTAGAGCTCCTCC
TAGGTGTGGAGAAACAAGCGCGCATGGGTAATGATGTGACCAGCTTGAAA
GAAGTGGTCTTAGCCACAATACGACTTGTGCGAGAAAAGAAAGATTGGGA
GCAGATGAACGCGACTTTGACCCAAATCAGCAAGCGGCGGTCGCAGAACA
AGGCCGCAATCTCAGCCATGGTGCAGGAGGCCATGGGCCCTTCCTACTTG
GACGCCACCCCTGACGTGGAGACGAAGAGGAAGCTGATCGTCACGCTCCG
CGATATAACGGATGGGAAAATTTTCGTAGAGACTGAGCGCGCGCGCCTTA
CCCGGACCCTTTCACACCTCTTGGAAGCGGAGGGGAAGGTCGCCGAGGCT
TGCGATATCATCCAGGACGTCCATGTGGAGACGTATGGCTCCCTGGACAA
ACAAGAGAAGCTCGAATTTATTCTTGAGCAGATTCGTCTCACCTTGGCCA
AGAAGGACTTCATACGCACGTACATCATCGCCAAGAAGGTGACCAAGAAG
CTGTTGGAGGGGGAGGACCCAGCCTTGCAAGCCTTGAAGCTGAAGTTCTA
TCGGCTGATGATTGAGTACCACTCACTGGCCGAGAAGGAAGCATTCGAAA
TAGCACAGCACTATCACTCCATCTATAATACTCCTGTAGTGCGTGCGGAG
GAAAGCGAGTGGCGAGCGGCGCTGAGTGCCTGCGTCCTCTTTCTCATTAT
CGCCCCGCATTCCAACCAGCAGAGCGATATGCTCCACCGACTCGTCCGGC
AGGAGGAGGATCAGCTCGCCCAGCTTCCTGTTTACAAAGAGATCCTCAAG
ACCTACACGACCCGGGAAATCATCCAATACCCTCTGCCCCAACTCCCCGA
CATCGAGTCGCACCCCGCCTTGACACTGTACGGCCATGAGCTTGCGCAAC
ACTGGCTCCAGCAGCTGCGAACTCGGGTGATTCAACACAACATCCGGGTA
CTCTCTGCGTACTACAAGAAGATTCGGTTGAGCCGCGCTGCGGACCTTTT
GTCGCTGGATGTTTCAGAGCTAGAGAATAACATCTCCACGTTGGTGAGCG
AGGGGGCCTTATACGCGCGCATCGACCGGCCCGCCAACCAAGTCAGTTTT
GCCCCGACAAAAATAGCGGAGGAGACCCTTTCAGACTGGGCGGCGGACAT
ATCGGAATTGCTTCGGTTAGTGGAGCGCACCACGCATTTAATAAATAAGG
AGCAGATGTTGCATAAGGTGGTGTAGTGGGAGTCGCAAGGAGGGGGGAAC
AGGGAGAAAAGCAATGGCAGGCCACTACGGAAGGGGTAAAATTGAAATAA
CGTTTGTGTTCGAGACCAAAATAGAACGGAATGGCTCGCTCATAGTCAGA
CAACATGTTTCCGTCCCTTTTTCGATTTTCTTCTTTTTGAAAGGAGATTA
AGCGAGAGCCCGAATTTGTTTTTCGTTTCGAAAATCTTACGCAAACTGCC
GTGACCATACGCGGCATTGCAGAACTTGGCAACACTCCT

protein sequence of rna9559

>rna9559-protein ID=rna9559-protein|Name=rna9559|organism=Nannochloropsis gaditana|type=polypeptide|length=507bp
MVAEVKAVLNGKDLNNGSSKGVLAIPKAVELAQKEEEDVITTTKVEPASG
PATTQQNVTSSKKKKTAASKKEQTLTQQDSKGTANKENDKVSEKTEETSG
KAETHEASAGSASISAMKPKNNAIKSSISANGAVANVTKEVQTSSATNKN
VPPSQQPQRVQQTQQRTLPFQPYAGIPPFNQLRETNLQDWPPDRGLTFIR
PCPSGTSSLEKLSMLKNCPQILAYIQSFSGADWMEATFSPQPCIRLTATT
QMPGGKATAEAILRLSDEMVLQWLHRFDPQMPIWAMFVCPAMLSGLMVGK
QAVNLKKIEESSSARVWAAPRDSEAQYVSFFICSNNYEATRSAYALLEAR
AHNQMEMAMTSVQHPPPPPPPLSSVAPTAPAKASGAGSRPVPSASAPSEG
TEVALARLAIPSPPADDDTSSTDMEPSTQQSSGDSTPPATHKSGRRVPPP
SSPSGRARTPDGGAASPSGPDSKASDKGESASSDVLGEAANLQSSTPQKE
SQAKKGP

mRNA from alignment at KK037254.1:168081..170836-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9559 ID=rna9559|Name=rna9559|organism=Nannochloropsis gaditana|type=mRNA|length=2756bp|location=Sequence derived from alignment at KK037254.1:168081..170836- (Nannochloropsis gaditana)
CTCGCTGTTGCTCCATGGCGTAAGGCATATCTACCGATCTTGCAAGGATT
CACTGCTTGCAGTCGAAGCCGGTCTATGCTCTTTCCAGGCTCGCTTTCCC
GGGGACATCTCCCTGCCCAAGTGGCCATCAAGGTGCTCAATCTTTATACA
TTATACTTCATTCTTATATTCGTAATCAGTTCACTGCTCACGTTTTTTCA
TTTTCCTCTCGCGTAACTGGGTTGTCTCACGGCTCACCTCCTGTGAATTG
AAGACGACCTTGCAGGAGCAAGCCAGTATTCCTCGGGTCCTTTACAACAC
CCCAAAGCTAATAAACAATGGTCGCAGAAGTCAAGGCAGTCTTAAATGGT
AAAGATTTAAACAACGGTAGCAGTAAAGGCGTGTTAGCTATACCCAAGGC
TGTCGAATTAGCGCAAAAAGAGGAGGAAGATGTTATCACAACCACAAAGG
TGGAACCCGCCTCAGGGCCGGCAACAACGCAACAGAATGTCACGTCGAGT
AAGAAAAAGAAAACAGCAGCCAGCAAAAAAGAGCAGACTCTGACACAACA
GGATAGCAAGGGCACTGCAAACAAAGAGAACGACAAGGTATCTGAGAAGA
CTGAGGAGACGAGCGGGAAGGCCGAGACTCATGAGGCCTCGGCCGGTAGT
GCAAGCATCTCAGCAATGAAACCGAAAAACAATGCCATCAAGTCCTCCAT
CTCTGCGAATGGCGCAGTGGCCAATGTAACCAAGGAAGTCCAGACGTCTT
CAGCCACCAACAAGAACGTCCCACCATCACAGCAACCACAACGAGTGCAG
CAAACGCAGCAACGCACTCTGCCGTTTCAGCCCTACGCCGGTATTCCTCC
CTTCAACCAGCTTCGCGAGACAAATTTGCAGGATTGGCCCCCGGACCGCG
GCCTGACTTTTATTCGCCCCTGCCCCAGCGGGACTTCCTCACTGGAGAAG
TTGAGCATGCTGAAAAACTGTCCGCAGATTCTCGCCTACATTCAATCATT
CTCGGGGGCTGATTGGATGGAAGCCACGTTCTCCCCACAACCTTGCATTC
GCTTGACGGCCACCACACAGATGCCCGGGGGGAAAGCGACGGCTGAGGCG
ATCCTGCGCCTCTCGGACGAGATGGTTCTACAGTGGCTTCATCGCTTCGA
CCCCCAGATGCCGATATGGGCTATGTTCGTGTGCCCCGCCATGCTGTCGG
GGCTGATGGTGGGCAAGCAAGCCGTGAATCTGAAGAAGATCGAGGAAAGT
TCCTCTGCACGTGTGTGGGCGGCGCCGCGGGACTCGGAGGCGCAGTACGT
GAGCTTCTTCATTTGCAGCAATAACTATGAAGCGACACGCAGCGCCTATG
CCCTCTTGGAGGCGCGGGCGCACAATCAAATGGAAATGGCCATGACCAGC
GTCCAGCACCCACCCCCACCTCCCCCACCCCTCTCCTCCGTTGCTCCAAC
CGCCCCGGCCAAAGCCAGCGGGGCCGGATCGCGGCCCGTCCCTAGCGCCT
CCGCCCCCTCGGAGGGTACGGAGGTGGCACTAGCCCGCCTCGCCATTCCA
TCCCCGCCCGCTGACGACGACACTTCTTCTACTGACATGGAGCCCTCTAC
ACAGCAGTCATCTGGGGACAGCACGCCCCCCGCCACCCATAAATCGGGCA
GACGTGTGCCCCCGCCGTCGTCTCCATCAGGCCGCGCTCGCACGCCCGAT
GGAGGCGCCGCATCACCCTCAGGGCCCGACAGCAAGGCATCAGACAAAGG
CGAGAGCGCCAGCAGCGACGTCCTCGGGGAGGCTGCCAACCTCCAGAGCA
GTACTCCCCAGAAGGAGAGTCAGGCAAAGAAGGGGCCATGAGCAGGACAA
ACCGATGAAGGGGAAAGAGGGGCAGTCGTAGAGAAGCCCAGCGGCCTTCG
GGCCCCGATGGGGGAGCCAAACAATGCGCCAGGTTGACAGAAATATTGCG
CTGCATTGAAAGCAATAGTACGGCTTCTCGGGAGCAAGCATTCTAGAGGA
AAGTTACGGCCGAAGGGTCCGGGAGGAATAACACGAGGACTAGACAGCTT
AAATAAAAAAGGTAGGGAGGGTATCGACCGAACAGTCTTATTTCGATCCC
ATTTGTCCACCGATTAACATTAATCAAGATTGTACCTCAGGATACATTGT
CTCATCACGTGTGTGGCTGCTGAAAATTAATGACATGTGCTTTGCAAATG
GAACATGATTATGACTGGTTCTGATGAACCGAGCAATGAAAGACGTTCTG
GGCGGTCGGGACAGGACAGTCATTCAGAGGAGACAATATTTTCTTTTTAA
GCATTTGATTGTGGCGTAGAGGCGGCACGGCGCAGGGCGGAGTATACATA
TAGCTTACCGAGGAAGTAAGAACCGTAAGTTGGCAAGTGCCCACACTAGA
CGACTGGGAAAAACCAAACACGGCGTTGTCTAAATGCTTGAATTCCGACA
GAGTCGTCCCCTAACCGCTCACTGGGTGCAAATGCGCTCGTAGTGCTAGT
GGCAAGTGTACTCGAGGAAGTGTCGCCGTGGCTCCCAAGAGGTTCACCTC
CATATTTTTGTTGAAATTTTTTCCTCACGTGAACCGAAAGTTGTTGGGCC
TTGCCGTGGCGCCAAACATGAGGAGTGTTGCCAAGTTCTGCAATGCCGCG
TATGGTCACGGCAGTTTGCGTAAGATTTTCGAAACGAAAAACAAATTCGG
GCTCTCGCTTAATCTCCTTTCAAAAAGAAGAAAATCGAAAAAGGGACGGA
AACATG

Coding sequence (CDS) from alignment at KK037254.1:168081..170836-

>rna9559 ID=rna9559|Name=rna9559|organism=Nannochloropsis gaditana|type=CDS|length=1524bp|location=Sequence derived from alignment at KK037254.1:168081..170836- (Nannochloropsis gaditana)
ATGGTCGCAGAAGTCAAGGCAGTCTTAAATGGTAAAGATTTAAACAACGG
TAGCAGTAAAGGCGTGTTAGCTATACCCAAGGCTGTCGAATTAGCGCAAA
AAGAGGAGGAAGATGTTATCACAACCACAAAGGTGGAACCCGCCTCAGGG
CCGGCAACAACGCAACAGAATGTCACGTCGAGTAAGAAAAAGAAAACAGC
AGCCAGCAAAAAAGAGCAGACTCTGACACAACAGGATAGCAAGGGCACTG
CAAACAAAGAGAACGACAAGGTATCTGAGAAGACTGAGGAGACGAGCGGG
AAGGCCGAGACTCATGAGGCCTCGGCCGGTAGTGCAAGCATCTCAGCAAT
GAAACCGAAAAACAATGCCATCAAGTCCTCCATCTCTGCGAATGGCGCAG
TGGCCAATGTAACCAAGGAAGTCCAGACGTCTTCAGCCACCAACAAGAAC
GTCCCACCATCACAGCAACCACAACGAGTGCAGCAAACGCAGCAACGCAC
TCTGCCGTTTCAGCCCTACGCCGGTATTCCTCCCTTCAACCAGCTTCGCG
AGACAAATTTGCAGGATTGGCCCCCGGACCGCGGCCTGACTTTTATTCGC
CCCTGCCCCAGCGGGACTTCCTCACTGGAGAAGTTGAGCATGCTGAAAAA
CTGTCCGCAGATTCTCGCCTACATTCAATCATTCTCGGGGGCTGATTGGA
TGGAAGCCACGTTCTCCCCACAACCTTGCATTCGCTTGACGGCCACCACA
CAGATGCCCGGGGGGAAAGCGACGGCTGAGGCGATCCTGCGCCTCTCGGA
CGAGATGGTTCTACAGTGGCTTCATCGCTTCGACCCCCAGATGCCGATAT
GGGCTATGTTCGTGTGCCCCGCCATGCTGTCGGGGCTGATGGTGGGCAAG
CAAGCCGTGAATCTGAAGAAGATCGAGGAAAGTTCCTCTGCACGTGTGTG
GGCGGCGCCGCGGGACTCGGAGGCGCAGTACGTGAGCTTCTTCATTTGCA
GCAATAACTATGAAGCGACACGCAGCGCCTATGCCCTCTTGGAGGCGCGG
GCGCACAATCAAATGGAAATGGCCATGACCAGCGTCCAGCACCCACCCCC
ACCTCCCCCACCCCTCTCCTCCGTTGCTCCAACCGCCCCGGCCAAAGCCA
GCGGGGCCGGATCGCGGCCCGTCCCTAGCGCCTCCGCCCCCTCGGAGGGT
ACGGAGGTGGCACTAGCCCGCCTCGCCATTCCATCCCCGCCCGCTGACGA
CGACACTTCTTCTACTGACATGGAGCCCTCTACACAGCAGTCATCTGGGG
ACAGCACGCCCCCCGCCACCCATAAATCGGGCAGACGTGTGCCCCCGCCG
TCGTCTCCATCAGGCCGCGCTCGCACGCCCGATGGAGGCGCCGCATCACC
CTCAGGGCCCGACAGCAAGGCATCAGACAAAGGCGAGAGCGCCAGCAGCG
ACGTCCTCGGGGAGGCTGCCAACCTCCAGAGCAGTACTCCCCAGAAGGAG
AGTCAGGCAAAGAAGGGGCCATGA

Synonyms

Publications