EWM21149.1, cds9528 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM21149.1
Unique Name	cds9528
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037254.1:168996..170519 -

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Properties


Property Name	Value
Protein id	EWM21149.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100319g3.4371.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:168996..170519 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR004088	KH_dom_type_1

Homology

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BLAST of EWM21149.1 vs. NCBI_GenBank
Match: gi|585101217|gb|EWM21149.1| (hypothetical protein Naga_100319g3 [Nannochloropsis gaditana])

HSP 1 Score: 1029.62 bits (2661), Expect = 0.000e+0
Identity = 507/507 (100.00%), Postives = 507/507 (100.00%), Query Frame = 0

Query:    1 MVAEVKAVLNGKDLNNGSSKGVLAIPKAVELAQKEEEDVITTTKVEPASGPATTQQNVTSSKKKKTAASKKEQTLTQQDSKGTANKENDKVSEKTEETSGKAETHEASAGSASISAMKPKNNAIKSSISANGAVANVTKEVQTSSATNKNVPPSQQPQRVQQTQQRTLPFQPYAGIPPFNQLRETNLQDWPPDRGLTFIRPCPSGTSSLEKLSMLKNCPQILAYIQSFSGADWMEATFSPQPCIRLTATTQMPGGKATAEAILRLSDEMVLQWLHRFDPQMPIWAMFVCPAMLSGLMVGKQAVNLKKIEESSSARVWAAPRDSEAQYVSFFICSNNYEATRSAYALLEARAHNQMEMAMTSVQHPPPPPPPLSSVAPTAPAKASGAGSRPVPSASAPSEGTEVALARLAIPSPPADDDTSSTDMEPSTQQSSGDSTPPATHKSGRRVPPPSSPSGRARTPDGGAASPSGPDSKASDKGESASSDVLGEAANLQSSTPQKESQAKKGP 507
            MVAEVKAVLNGKDLNNGSSKGVLAIPKAVELAQKEEEDVITTTKVEPASGPATTQQNVTSSKKKKTAASKKEQTLTQQDSKGTANKENDKVSEKTEETSGKAETHEASAGSASISAMKPKNNAIKSSISANGAVANVTKEVQTSSATNKNVPPSQQPQRVQQTQQRTLPFQPYAGIPPFNQLRETNLQDWPPDRGLTFIRPCPSGTSSLEKLSMLKNCPQILAYIQSFSGADWMEATFSPQPCIRLTATTQMPGGKATAEAILRLSDEMVLQWLHRFDPQMPIWAMFVCPAMLSGLMVGKQAVNLKKIEESSSARVWAAPRDSEAQYVSFFICSNNYEATRSAYALLEARAHNQMEMAMTSVQHPPPPPPPLSSVAPTAPAKASGAGSRPVPSASAPSEGTEVALARLAIPSPPADDDTSSTDMEPSTQQSSGDSTPPATHKSGRRVPPPSSPSGRARTPDGGAASPSGPDSKASDKGESASSDVLGEAANLQSSTPQKESQAKKGP
Sbjct:    1 MVAEVKAVLNGKDLNNGSSKGVLAIPKAVELAQKEEEDVITTTKVEPASGPATTQQNVTSSKKKKTAASKKEQTLTQQDSKGTANKENDKVSEKTEETSGKAETHEASAGSASISAMKPKNNAIKSSISANGAVANVTKEVQTSSATNKNVPPSQQPQRVQQTQQRTLPFQPYAGIPPFNQLRETNLQDWPPDRGLTFIRPCPSGTSSLEKLSMLKNCPQILAYIQSFSGADWMEATFSPQPCIRLTATTQMPGGKATAEAILRLSDEMVLQWLHRFDPQMPIWAMFVCPAMLSGLMVGKQAVNLKKIEESSSARVWAAPRDSEAQYVSFFICSNNYEATRSAYALLEARAHNQMEMAMTSVQHPPPPPPPLSSVAPTAPAKASGAGSRPVPSASAPSEGTEVALARLAIPSPPADDDTSSTDMEPSTQQSSGDSTPPATHKSGRRVPPPSSPSGRARTPDGGAASPSGPDSKASDKGESASSDVLGEAANLQSSTPQKESQAKKGP 507

The following BLAST results are available for this feature:

BLAST of EWM21149.1 vs. NCBI_GenBank

BLAST of EWM21149.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585101217\|gb\|EWM21149.1\|	0.000e+0	100.00	hypothetical protein Naga_100319g3 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna9559	rna9559	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications