rna9558, rna9558 (mRNA) Nannochloropsis gaditana

Overview
Namerna9558
Unique Namerna9558
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length959
Alignment locationKK037254.1:166328..168216 +

Link to JBrowse

Properties
Property NameValue
Product26s proteasome non-atpase regulatory subunit 12
Orig transcript idgnl|cribi|Naga_100319g5.4370.mrna
Orig protein idgnl|cribi|Naga_100319g5.4370
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:166328..168216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100319g5gene9279Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9558rna9558-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21148.1cds9527Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9558 ID=rna9558|Name=rna9558|organism=Nannochloropsis gaditana|type=mRNA|length=959bp
TTACTCTAATCTCGCATCGTTATCATTGTATCTCATGAAGGTAGACCCAC
AGCACAAACATGCTTCTACGCACTGCTGCAGCTTCAAGTCGCAAGGCCGT
TGCCTGTTGCATGTTTCCCAAAGCTGCTTTGGGCCGACAGGGCTACACCA
AGGTTCAGGTCTTGCAAGCCGCCTATTTGAGTACTGCAAGTAAAGAGACT
TACACCGAACGACAAGCTAGGACAGGGCGCCCCGTCTCTCCGCATGTGAC
CATCTACAAATTCCCAATCACCGCGCTCACCTCCATCTCTACGCGTGTGA
CGGGTGGCGTCTTGACTGTCGGACTGACTGGTATCTCTTTGCTCGCCCTG
GGCGGGGCAGATGTTCCGATGCTCATGTCGAGCCTGGGGAACTCTATGGT
GGGGGTACCGGCGAAGGTCTTATTCGGCTTTCCTTTGATCTTCCATTACG
GCTCAGGATTGCGGCACTTTGTACGTTTGGGTTTTGGATAGGGTGTGCAT
GCAGGCAGGAAGGATCATTACGTAGAAGCTTTGAGGTGCACTAGGTTGAA
TGCAGGCACGTGTCGTCCTTCCTCAGCCTGCATGAAGGGCGCTGTCAATC
TTTCACACGTGTCATGCGCCCATTGATTCATCATAACTCACTAATTTTTA
TCTTTCTATGTATCCGTGTGATCGTAGTTTTGGGACAACAATCCCAACTT
TCTGAACAACAAGGGGGTCGCTGAAGCCTCCTACATCCTCCTCGGCTCAA
CCGTCGCGATATCGTTGGTATCTGGATTTGTCACTCTGGCACCCTCCTCG
TCGGACGGAAAGAAATAAACTTTCACAGTTTTGATTTTTGTTGAGTGGGG
TGTGCGGAAAATGCGGCTATTCCAGGCGAATGATAGACAGGGATCCTGGC
AAACATATTTGTTTAAATGGAAGAAAGAAAGGCCGATGAATGAGTCAAGG
ATGAAGCAC
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protein sequence of rna9558

>rna9558-protein ID=rna9558-protein|Name=rna9558|organism=Nannochloropsis gaditana|type=polypeptide|length=446bp
MDGQLIEKKDCSAAVAAALPEAKSLADAGKLAEAVELLLGVEKQARMGND
VTSLKEVVLATIRLVREKKDWEQMNATLTQISKRRSQNKAAISAMVQEAM
GPSYLDATPDVETKRKLIVTLRDITDGKIFVETERARLTRTLSHLLEAEG
KVAEACDIIQDVHVETYGSLDKQEKLEFILEQIRLTLAKKDFIRTYIIAK
KVTKKLLEGEDPALQALKLKFYRLMIEYHSLAEKEAFEIAQHYHSIYNTP
VVRAEESEWRAALSACVLFLIIAPHSNQQSDMLHRLVRQEEDQLAQLPVY
KEILKTYTTREIIQYPLPQLPDIESHPALTLYGHELAQHWLQQLRTRVIQ
HNIRVLSAYYKKIRLSRAADLLSLDVSELENNISTLVSEGALYARIDRPA
NQVSFAPTKIAEETLSDWAADISELLRLVERTTHLINKEQMLHKVV
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mRNA from alignment at KK037254.1:166328..168216+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9558 ID=rna9558|Name=rna9558|organism=Nannochloropsis gaditana|type=mRNA|length=1889bp|location=Sequence derived from alignment at KK037254.1:166328..168216+ (Nannochloropsis gaditana)
TTCGTCGTCCGTCGATCATCGGGCGAAGCAGGACTACGCAACAAGGAAAA ATGTCACATGCAAAACCCCGCAGGGCTGTTATTTCTGTGAAAAAGCACCA CAGAGGTAAAAAAACAGTGCACTGAATTACTCTTCTTGCGTCAAATTTTG CTTGTCGGACTCCTACGCCTCTACTGCTTCAAAGCCTTCATCGAATTCTT CCAGCGTTCCTCTTTCGCCAAGTTTCATTTCCCTGTCTGATGATCAGCAC TCATTTCTTACTATAACATACAGTTTTTGGAAACTATGGACGGGCAGCTG ATTGAAAAGAAGGATTGCTCAGCTGCAGTCGCCGCCGCGCTTCCGGAAGC GAAATCTTTGGCCGATGCAGGCAAGCTGGCTGAAGCTGTAGAGCTCCTCC TAGGTGTGGAGAAACAAGCGCGCATGGGTAATGATGTGACCAGCTTGAAA GAAGTGGTCTTAGCCACAATACGACTTGtgcgagaaaagaaagatTGGGA GCAGATGAACGCGACTTTGACCCAAATCAGCAAGCGGCGGTCGCAGAACA AGGCCGCAATCTCAGCCATGGTGCaggaggccatgggcccTTCCTACTTG GACGCCACCCCTGACgtggagacgaagaggaagctgaTCGTCACGCTCCG CGATATAACGGATGGGAAAATTTTCGTAGAGACTGAGCGCGCGCGCCTTA CCCGGACCCTTTCACACCTcttggaagcggaggggaaggtcgCCGAGGCT TGCGATATCATCCAGGACGTCCATGTGGAGACGTATGGCTCCCTGGACAA ACAAGAGAAGCTCGAATTTATTCTTGAGCAGATTCGTCTCACCTTGGCCA AGAAGGACTTCATACGCACGTACATCATCGCCAAGAAGGTGACCAAGAAG ctgttggagggggaggacccAGCCTTGCAAGCCTTGAAGCTGAAGTTCTA TCGGCTGATGATTGAGTACCACTCACTGGCCGAGAAGGAAGCATTCGAAA TAGCACAGCACTATCACTCCATCTATAATACTCCTGTAGTGCGtgcggag gaaagcgagtgGCGAGCGGCGCTGAGTGCctgcgtcctctttctcattaT CGCCCCGCATTCCAACCAGCAGAGCGATATGCTCCACCGACTCGtccggc aggaggaggatcagCTCGCCCAGCTTCCTGTTTACAAAGAGATCCTCAAG ACCTACACGACCCGGGAAATCATCCAATACCCTCTGCCCCAACTCCCCGA CATCGAGTCGCACCCCGCCTTGACACTGTACGGCCATGAGCTTGCGCAAC ACTGGCTCCAGCAGCTGCGAACTCGGGTGATTCAACACAACATCCGGGTA CTCTCTGCGTACTACAAGAAGATTCGGTTGAGCCGCGCTGCGGACCTTTT GTCGCTGGATGTTTCAGAGCTAGAGAATAACATCTCCACGTTGGTGAGCG AGGGGGCCTTATACGCGCGCATCGACCGGCCCGCCAACCAAGTCAGTTTT GCCCCGACAAAAATAGCGGAGGAGACCCTTTCAGACTGGGCGGCGGACAT ATCGGAATTGCTTCGGTTAGTGGAGCGCACCACGCATTTAATAAATAAGG AGCAGATGTTGCATAAGGTGGTGTAGTGGGAGtcgcaaggaggggggaac aGGGAGAAAAGCAATGGCAGGCCACTACGGAAGGGGTAAAATTGAAATAA CGTTTGTGTTCGAGACCAAAATAGAACGGAATGGCTCGCTCATAGTCAGA CAACATGTTTCCGTCCCTTTTTcgattttcttctttttgaaaGGAGATTA AGCGAGAGCCCGAATTTGTTTTTCGTTTCGAAAATCTTACGCAAACTGCC GTGACCATACGCGGCATTGCAGAACTTGGCAACACTCCT
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Coding sequence (CDS) from alignment at KK037254.1:166328..168216+

>rna9558 ID=rna9558|Name=rna9558|organism=Nannochloropsis gaditana|type=CDS|length=1341bp|location=Sequence derived from alignment at KK037254.1:166328..168216+ (Nannochloropsis gaditana)
ATGGACGGGCAGCTGATTGAAAAGAAGGATTGCTCAGCTGCAGTCGCCGC
CGCGCTTCCGGAAGCGAAATCTTTGGCCGATGCAGGCAAGCTGGCTGAAG
CTGTAGAGCTCCTCCTAGGTGTGGAGAAACAAGCGCGCATGGGTAATGAT
GTGACCAGCTTGAAAGAAGTGGTCTTAGCCACAATACGACTTGtgcgaga
aaagaaagatTGGGAGCAGATGAACGCGACTTTGACCCAAATCAGCAAGC
GGCGGTCGCAGAACAAGGCCGCAATCTCAGCCATGGTGCaggaggccatg
ggcccTTCCTACTTGGACGCCACCCCTGACgtggagacgaagaggaagct
gaTCGTCACGCTCCGCGATATAACGGATGGGAAAATTTTCGTAGAGACTG
AGCGCGCGCGCCTTACCCGGACCCTTTCACACCTcttggaagcggagggg
aaggtcgCCGAGGCTTGCGATATCATCCAGGACGTCCATGTGGAGACGTA
TGGCTCCCTGGACAAACAAGAGAAGCTCGAATTTATTCTTGAGCAGATTC
GTCTCACCTTGGCCAAGAAGGACTTCATACGCACGTACATCATCGCCAAG
AAGGTGACCAAGAAGctgttggagggggaggacccAGCCTTGCAAGCCTT
GAAGCTGAAGTTCTATCGGCTGATGATTGAGTACCACTCACTGGCCGAGA
AGGAAGCATTCGAAATAGCACAGCACTATCACTCCATCTATAATACTCCT
GTAGTGCGtgcggaggaaagcgagtgGCGAGCGGCGCTGAGTGCctgcgt
cctctttctcattaTCGCCCCGCATTCCAACCAGCAGAGCGATATGCTCC
ACCGACTCGtccggcaggaggaggatcagCTCGCCCAGCTTCCTGTTTAC
AAAGAGATCCTCAAGACCTACACGACCCGGGAAATCATCCAATACCCTCT
GCCCCAACTCCCCGACATCGAGTCGCACCCCGCCTTGACACTGTACGGCC
ATGAGCTTGCGCAACACTGGCTCCAGCAGCTGCGAACTCGGGTGATTCAA
CACAACATCCGGGTACTCTCTGCGTACTACAAGAAGATTCGGTTGAGCCG
CGCTGCGGACCTTTTGTCGCTGGATGTTTCAGAGCTAGAGAATAACATCT
CCACGTTGGTGAGCGAGGGGGCCTTATACGCGCGCATCGACCGGCCCGCC
AACCAAGTCAGTTTTGCCCCGACAAAAATAGCGGAGGAGACCCTTTCAGA
CTGGGCGGCGGACATATCGGAATTGCTTCGGTTAGTGGAGCGCACCACGC
ATTTAATAAATAAGGAGCAGATGTTGCATAAGGTGGTGTAG
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Synonyms
Publications