rna9557, rna9557 (mRNA) Nannochloropsis gaditana

Overview
Namerna9557
Unique Namerna9557
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length752
Alignment locationKK037254.1:164602..166125 -

Link to JBrowse

Properties
Property NameValue
Productsuccinate dehydrogenase cytochrome b subunit
Orig transcript idgnl|cribi|Naga_100319g6.4367.mrna
Orig protein idgnl|cribi|Naga_100319g6.4367
GeneSDH3
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:164602..166125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SDH3gene9278Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9557rna9557-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21145.1cds9526Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9557 ID=rna9557|Name=rna9557|organism=Nannochloropsis gaditana|type=mRNA|length=752bp
TTACTCTAATCTCGCATCGTTATCATTGTATCTCATGAAGGTAGACCCAC
AGCACAAACATGCTTCTACGCACTGCTGCAGCTTCAAGTCGCAAGGCCGT
TGCCTGTTGCATGTTTCCCAAAGCTGCTTTGGGCCGACAGGGCTACACCA
AGGTTCAGGTCTTGCAAGCCGCCTATTTGAGTACTGCAAGTAAAGAGACT
TACACCGAACGACAAGCTAGGACAGGGCGCCCCGTCTCTCCGCATGTGAC
CATCTACAAATTCCCAATCACCGCGCTCACCTCCATCTCTACGCGTGTGA
CGGGTGGCGTCTTGACTGTCGGACTGACTGGTATCTCTTTGCTCGCCCTG
GGCGGGGCAGATGTTCCGATGCTCATGTCGAGCCTGGGGAACTCTATGGT
GGGGGTACCGGCGAAGGTCTTATTCGGCTTTCCTTTGATCTTCCATTACG
GCTCAGGATTGCGGCACTTTTTTTGGGACAACAATCCCAACTTTCTGAAC
AACAAGGGGGTCGCTGAAGCCTCCTACATCCTCCTCGGCTCAACCGTCGC
GATATCGTTGGTATCTGGATTTGTCACTCTGGCACCCTCCTCGTCGGACG
GAAAGAAATAAACTTTCACAGTTTTGATTTTTGTTGAGTGGGGTGTGCGG
AAAATGCGGCTATTCCAGGCGAATGATAGACAGGGATCCTGGCAAACATA
TTTGTTTAAATGGAAGAAAGAAAGGCCGATGAATGAGTCAAGGATGAAGC
AC
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protein sequence of rna9557

>rna9557-protein ID=rna9557-protein|Name=rna9557|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTE
RQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGA
DVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFVRLGFG
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mRNA from alignment at KK037254.1:164602..166125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9557 ID=rna9557|Name=rna9557|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp|location=Sequence derived from alignment at KK037254.1:164602..166125- (Nannochloropsis gaditana)
TTACTCTAATCTCGCATCGTTATCATTGTATCTCATGAAGGTAGACCCAC
AGCACAAACATGCTTCTACGCACTGCTGCAGCTTCAAGTCGCAAGGCCGT
TGCCTGTTGCATGTTTCCCAAAGCTGCTTTGGGCCGACAGGGCTACACCA
AGGTTCAGGTAAGTAAGTGGCAGACCACAGCTACGAGAATGACCCAAAGA
GATAGGCAACGCGATTGTAGTATGTCTCATGAGATTCTCTACGAGACGCG
TGACTGAGCGGGCTCGACGTAACTACACTGATTCACGCCGTGGTGCGGGT
GTAGTCTCGGCAGTGCGAGAATGGCCCTTGCTGCAAGCCAAATGTTAGAA
GTACTTAAAATTTGGAAATTTGAATGCACGTGTAGTCGGAAGATGCTGGA
AGGTCTACATTTGGACGTAGAAGGCCAGCACTCGGATCGGACCGTACGGC
ATGAATCTACTTGCCCCGCCTAAGTGCCAAATCATTCTCCTTCACAGGTC
TTGCAAGCCGCCTATTTGAGTACTGCAAGTAAAGAGACTTACACCGAACG
ACAAGCTAGGACAGGTTAGTTCTATTAGTCTGCAGGCACATGTACATCTT
GTCATGTCGTTTTCAAATCGCTCGTTCTTTAATTGACCTGTAAATTCCCG
CTATGTGCGCGCGAGAGGAATTCGTTTTGTGCGGATTTCACAACGCATAA
ATTATGCATCAAGTCGTTTGTTGGTTCTTCGAATGTCTCTGAAATGACGT
CGTCCCGGTCCTATCTTCCTCCGCACGCGTGTCCTCGCAGGGCGCCCCGT
CTCTCCGCATGTGACCATCTACAAATTCCCAATCACCGCGCTCACCTCCA
TCTCTACGCGTGTGACGGGTGGCGTCTTGACTGTCGGACTGACTGGTATC
TCTTTGCTCGCCCTGGGCGGGGCAGATGTTCCGATGCTCATGTCGAGCCT
GGGGAACTCTATGGTGGGGGTACCGGCGAAGGTCTTATTCGGCTTTCCTT
TGATCTTCCATTACGGCTCAGGATTGCGGCACTTTGTACGTTTGGGTTTT
GGATAGGGTGTGCATGCAGGCAGGAAGGATCATTACGTAGAAGCTTTGAG
GTGCACTAGGTTGAATGCAGGCACGTGTCGTCCTTCCTCAGCCTGCATGA
AGGGCGCTGTCAATCTTTCACACGTGTCATGCGCCCATTGATTCATCATA
ACTCACTAATTTTTATCTTTCTATGTATCCGTGTGATCGTAGTTTTGGGA
CAACAATCCCAACTTTCTGAACAACAAGGGGGTCGCTGAAGCCTCCTACA
TCCTCCTCGGCTCAACCGTCGCGATATCGTTGGTATCTGGATTTGTCACT
CTGGCACCCTCCTCGTCGGACGGAAAGAAATAAACTTTCACAGTTTTGAT
TTTTGTTGAGTGGGGTGTGCGGAAAATGCGGCTATTCCAGGCGAATGATA
GACAGGGATCCTGGCAAACATATTTGTTTAAATGGAAGAAAGAAAGGCCG
ATGAATGAGTCAAGGATGAAGCAC
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Coding sequence (CDS) from alignment at KK037254.1:164602..166125-

>rna9557 ID=rna9557|Name=rna9557|organism=Nannochloropsis gaditana|type=CDS|length=1296bp|location=Sequence derived from alignment at KK037254.1:164602..166125- (Nannochloropsis gaditana)
GGCGCCCCGTCTCTCCGCATGTGACCATCTACAAATTCCCAATCACCGCG
CTCACCTCCATCTCTACGCGTGTGACGGGTGGCGTCTTGACTGTCGGACT
GACTGGTATCTCTTTGCTCGCCCTGGGCGGGGCAGATGTTCCGATGCTCA
TGTCGAGCCTGGGGAACTCTATGGTGGGGGTACCGGCGAAGGTCTTATTC
GGCTTTCCTTTGATCTTCCATTACGGCTCAGGATTGCGGCACTTTGTACG
TTTGGGTTTTGGATAGGTCTTGCAAGCCGCCTATTTGAGTACTGCAAGTA
AAGAGACTTACACCGAACGACAAGCTAGGACAGATGCTTCTACGCACTGC
TGCAGCTTCAAGTCGCAAGGCCGTTGCCTGTTGCATGTTTCCCAAAGCTG
CTTTGGGCCGACAGGGCTACACCAAGGTTCAGGGCGCCCCGTCTCTCCGC
ATGTGACCATCTACAAATTCCCAATCACCGCGCTCACCTCCATCTCTACG
CGTGTGACGGGTGGCGTCTTGACTGTCGGACTGACTGGTATCTCTTTGCT
CGCCCTGGGCGGGGCAGATGTTCCGATGCTCATGTCGAGCCTGGGGAACT
CTATGGTGGGGGTACCGGCGAAGGTCTTATTCGGCTTTCCTTTGATCTTC
CATTACGGCTCAGGATTGCGGCACTTTGTACGTTTGGGTTTTGGATAGGT
CTTGCAAGCCGCCTATTTGAGTACTGCAAGTAAAGAGACTTACACCGAAC
GACAAGCTAGGACAGATGCTTCTACGCACTGCTGCAGCTTCAAGTCGCAA
GGCCGTTGCCTGTTGCATGTTTCCCAAAGCTGCTTTGGGCCGACAGGGCT
ACACCAAGGTTCAGGGCGCCCCGTCTCTCCGCATGTGACCATCTACAAAT
TCCCAATCACCGCGCTCACCTCCATCTCTACGCGTGTGACGGGTGGCGTC
TTGACTGTCGGACTGACTGGTATCTCTTTGCTCGCCCTGGGCGGGGCAGA
TGTTCCGATGCTCATGTCGAGCCTGGGGAACTCTATGGTGGGGGTACCGG
CGAAGGTCTTATTCGGCTTTCCTTTGATCTTCCATTACGGCTCAGGATTG
CGGCACTTTGTACGTTTGGGTTTTGGATAGGTCTTGCAAGCCGCCTATTT
GAGTACTGCAAGTAAAGAGACTTACACCGAACGACAAGCTAGGACAGATG
CTTCTACGCACTGCTGCAGCTTCAAGTCGCAAGGCCGTTGCCTGTTGCAT
GTTTCCCAAAGCTGCTTTGGGCCGACAGGGCTACACCAAGGTTCAG
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Synonyms
Publications