EWM21145.1, cds9526 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|585101213|gb|EWM21145.1| (succinate dehydrogenase cytochrome b subunit [Nannochloropsis gaditana]) HSP 1 Score: 285.804 bits (730), Expect = 1.619e-97 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFVRLGFG 143
MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFVRLGFG
Sbjct: 1 MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFVRLGFG 143
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|585101212|gb|EWM21144.1| (succinate dehydrogenase cytochrome b subunit [Nannochloropsis gaditana]) HSP 1 Score: 276.559 bits (706), Expect = 2.547e-93 Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query: 1 MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHF 137
MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHF
Sbjct: 1 MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHF 137
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|299470359|emb|CBN78408.1| (SDH3, succinate dehydrogenase subunit 3 [Ectocarpus siliculosus]) HSP 1 Score: 108.227 bits (269), Expect = 4.105e-27 Identity = 56/95 (58.95%), Postives = 65/95 (68.42%), Query Frame = 0
Query: 44 SKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFV 138
KE+YT RQARTGRPVSPHVTIY FP AL+SI+ RVTG L GL GIS L G D LMS+LG+S VG K+ FPL++HY +RH V
Sbjct: 48 EKESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTV 142
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|325182722|emb|CCA17177.1| (transmembrane protein putative [Albugo laibachii Nc14]) HSP 1 Score: 90.5077 bits (223), Expect = 3.043e-20 Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 0
Query: 26 RQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPA-----KVLFGFPLIFHYGSGLRHF 137
R T ++ L + T+++ +Y++RQAR GRPVSPHV IY PITA++SI+ RVTG L+VG S AL G DVP L+ S + V +PA K+ FPL +H + +RH
Sbjct: 12 RNTLTSLRQLAMSTSVTSNQPSYSQRQARLGRPVSPHVQIYAMPITAVSSITNRVTGVGLSVGFVAASSYALVGGDVPSLIHS---AQVSIPAFTPLSKLFVAFPLSYHTLAAIRHM 125
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|1072224552|gb|OEU09302.1| (succinate dehydrogenase cytochrome b subunit [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 89.7373 bits (221), Expect = 6.761e-20 Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0
Query: 45 KETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLAL--GGADVPMLMSSLGNS--MVGVPAKVLFGFPLIFHYGSGLRHFVRLGF 142
K+ YTER RTGRPVSPHV IY PI AL+SI+TRVTG +L+ G G+ + L G +M ++G++ + PAK+ FP+++H GLRHFV F
Sbjct: 43 KQNYTERMNRTGRPVSPHVQIYSMPIGALSSITTRVTGILLSFGALGVGGIDLIGGSGSALSVMEAIGDTSFFISGPAKLAVAFPIVYHSFGGLRHFVWDQF 144
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|698795150|ref|XP_009830604.1| (succinate dehydrogenase, cytochrome b556 subunit [Aphanomyces astaci] >gi|574114180|gb|ETV79668.1| succinate dehydrogenase, cytochrome b556 subunit [Aphanomyces astaci]) HSP 1 Score: 87.8113 bits (216), Expect = 2.416e-19 Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 0
Query: 47 TYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGN--SMVGVPAKVLFGFPLIFHYGSGLRH 136
+YTERQAR GRPVSPHV IY FPITAL+SI+ RVTG L+ G + L++ GADVP L+ S +K + FP+ +H+ G R
Sbjct: 25 SYTERQARLGRPVSPHVEIYAFPITALSSITNRVTGTALSGGFAAVGALSVIGADVPSLIYSAQEIIPFFAPVSKFVVAFPITYHFLCGARQ 116
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|1210523243|dbj|GAX17880.1| (succinate dehydrogenase (ubiquinone) cytochrome b560 subunit [Fistulifera solaris]) HSP 1 Score: 88.1965 bits (217), Expect = 2.563e-19 Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 0
Query: 47 TYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLAL-GGADVPM-LMSSLGNS--MVGVPAKVLFGFPLIFHYGSGLRHFV 138
Y++R TGRPVSPHVT+Y FP AL+SI+ RVTG L+VG G+ L+ L GG + LM ++G+ +V AK FP+++HY + +RHF+
Sbjct: 46 NYSKRMKETGRPVSPHVTVYAFPTVALSSITNRVTGCALSVGCAGLGLVELVGGTGTSLSLMQTIGSQGFVVAAAAKFTVSFPIVYHYFAAIRHFM 141
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|673042921|ref|XP_008875421.1| (succinate dehydrogenase, cytochrome b556 subunit [Aphanomyces invadans] >gi|574469094|gb|ETV96110.1| succinate dehydrogenase, cytochrome b556 subunit [Aphanomyces invadans]) HSP 1 Score: 87.4261 bits (215), Expect = 3.266e-19 Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 0
Query: 47 TYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSM--VGVPAKVLFGFPLIFHYGSGLRHFV 138
+YTERQAR GRPVSPHV IY FPITAL+SI+ RVTG ++ G + L++ GADVP L+ S + +K + FP+ +H+ G R V
Sbjct: 25 SYTERQARLGRPVSPHVEIYAFPITALSSITNRVTGIAMSGGFAAVGALSIVGADVPALLYSAQEVIPFFAPVSKFVVAFPISYHFLCGARQAV 118
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|922863231|gb|KOO30708.1| (succinate dehydrogenase cytochrome b560 mitochondrial [Chrysochromulina sp. CCMP291]) HSP 1 Score: 87.4261 bits (215), Expect = 3.969e-19 Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 0
Query: 46 ETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSS-LGNSMVGVPAKVLFGFPLIFHYGSGLRHFV 138
TY+E+ TGRP+SPH+TIY +P A++S+ R TG +L++G GI+ +AL A +P + + +S + P K GFPL++H+ +RH V
Sbjct: 17 STYSEKMDATGRPISPHITIYAWPTIAISSVMMRATGMMLSIGTAGIAFMALPSATMPQDFAQYMASSSLAAPTKFAVGFPLVYHWFGAIRHAV 110
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|397611682|gb|EJK61431.1| (hypothetical protein THAOC_18084 [Thalassiosira oceanica]) HSP 1 Score: 86.2705 bits (212), Expect = 4.088e-18 Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 0
Query: 45 KETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTG---ISLLALGGADVPMLMSSLGNS--MVGVPAKVLFGFPLIFHYGSGLRHFV 138
KE Y+ R A TGRP+SPHVTIY FP+ AL+SI+ RVTG +L+ G G + L+ GA V LMS++G S ++ AK FP ++HY G RH +
Sbjct: 88 KENYSARMAATGRPISPHVTIYSFPVGALSSITNRVTGVMLSFGAAGLGAVELVGGSGAGVD-LMSAIGGSGGVMAAGAKFAVAFPFVYHYMGGARHLI 185 The following BLAST results are available for this feature:
BLAST of EWM21145.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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