EWM21145.1, cds9526 (CDS) Nannochloropsis gaditana

Overview
NameEWM21145.1
Unique Namecds9526
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:165968..166066 -
Alignment locationKK037254.1:165562..165628 -
Alignment locationKK037254.1:165070..165335 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21145.1
Productsuccinate dehydrogenase cytochrome b subunit
Orig transcript idgnl|cribi|Naga_100319g6.4367.mrna
GeneSDH3
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:165968..166066 -
KK037254.1supercontigKK037254.1:165562..165628 -
KK037254.1supercontigKK037254.1:165070..165335 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR000701Succ_DH_Fumarate_Rdtase_TM-su
Homology
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|585101213|gb|EWM21145.1| (succinate dehydrogenase cytochrome b subunit [Nannochloropsis gaditana])

HSP 1 Score: 285.804 bits (730), Expect = 1.619e-97
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query:    1 MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFVRLGFG 143
            MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFVRLGFG
Sbjct:    1 MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFVRLGFG 143          
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|585101212|gb|EWM21144.1| (succinate dehydrogenase cytochrome b subunit [Nannochloropsis gaditana])

HSP 1 Score: 276.559 bits (706), Expect = 2.547e-93
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query:    1 MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHF 137
            MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHF
Sbjct:    1 MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHF 137          
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|299470359|emb|CBN78408.1| (SDH3, succinate dehydrogenase subunit 3 [Ectocarpus siliculosus])

HSP 1 Score: 108.227 bits (269), Expect = 4.105e-27
Identity = 56/95 (58.95%), Postives = 65/95 (68.42%), Query Frame = 0
Query:   44 SKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFV 138
             KE+YT RQARTGRPVSPHVTIY FP  AL+SI+ RVTG  L  GL GIS   L G D   LMS+LG+S VG   K+   FPL++HY   +RH V
Sbjct:   48 EKESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTV 142          
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|325182722|emb|CCA17177.1| (transmembrane protein putative [Albugo laibachii Nc14])

HSP 1 Score: 90.5077 bits (223), Expect = 3.043e-20
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 0
Query:   26 RQGYTKVQVLQAAYLSTASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPA-----KVLFGFPLIFHYGSGLRHF 137
            R   T ++ L  +   T+++ +Y++RQAR GRPVSPHV IY  PITA++SI+ RVTG  L+VG    S  AL G DVP L+ S   + V +PA     K+   FPL +H  + +RH 
Sbjct:   12 RNTLTSLRQLAMSTSVTSNQPSYSQRQARLGRPVSPHVQIYAMPITAVSSITNRVTGVGLSVGFVAASSYALVGGDVPSLIHS---AQVSIPAFTPLSKLFVAFPLSYHTLAAIRHM 125          
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|1072224552|gb|OEU09302.1| (succinate dehydrogenase cytochrome b subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 89.7373 bits (221), Expect = 6.761e-20
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0
Query:   45 KETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLAL--GGADVPMLMSSLGNS--MVGVPAKVLFGFPLIFHYGSGLRHFVRLGF 142
            K+ YTER  RTGRPVSPHV IY  PI AL+SI+TRVTG +L+ G  G+  + L  G      +M ++G++   +  PAK+   FP+++H   GLRHFV   F
Sbjct:   43 KQNYTERMNRTGRPVSPHVQIYSMPIGALSSITTRVTGILLSFGALGVGGIDLIGGSGSALSVMEAIGDTSFFISGPAKLAVAFPIVYHSFGGLRHFVWDQF 144          
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|698795150|ref|XP_009830604.1| (succinate dehydrogenase, cytochrome b556 subunit [Aphanomyces astaci] >gi|574114180|gb|ETV79668.1| succinate dehydrogenase, cytochrome b556 subunit [Aphanomyces astaci])

HSP 1 Score: 87.8113 bits (216), Expect = 2.416e-19
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 0
Query:   47 TYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGN--SMVGVPAKVLFGFPLIFHYGSGLRH 136
            +YTERQAR GRPVSPHV IY FPITAL+SI+ RVTG  L+ G   +  L++ GADVP L+ S           +K +  FP+ +H+  G R 
Sbjct:   25 SYTERQARLGRPVSPHVEIYAFPITALSSITNRVTGTALSGGFAAVGALSVIGADVPSLIYSAQEIIPFFAPVSKFVVAFPITYHFLCGARQ 116          
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|1210523243|dbj|GAX17880.1| (succinate dehydrogenase (ubiquinone) cytochrome b560 subunit [Fistulifera solaris])

HSP 1 Score: 88.1965 bits (217), Expect = 2.563e-19
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 0
Query:   47 TYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLAL-GGADVPM-LMSSLGNS--MVGVPAKVLFGFPLIFHYGSGLRHFV 138
             Y++R   TGRPVSPHVT+Y FP  AL+SI+ RVTG  L+VG  G+ L+ L GG    + LM ++G+   +V   AK    FP+++HY + +RHF+
Sbjct:   46 NYSKRMKETGRPVSPHVTVYAFPTVALSSITNRVTGCALSVGCAGLGLVELVGGTGTSLSLMQTIGSQGFVVAAAAKFTVSFPIVYHYFAAIRHFM 141          
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|673042921|ref|XP_008875421.1| (succinate dehydrogenase, cytochrome b556 subunit [Aphanomyces invadans] >gi|574469094|gb|ETV96110.1| succinate dehydrogenase, cytochrome b556 subunit [Aphanomyces invadans])

HSP 1 Score: 87.4261 bits (215), Expect = 3.266e-19
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 0
Query:   47 TYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSM--VGVPAKVLFGFPLIFHYGSGLRHFV 138
            +YTERQAR GRPVSPHV IY FPITAL+SI+ RVTG  ++ G   +  L++ GADVP L+ S    +      +K +  FP+ +H+  G R  V
Sbjct:   25 SYTERQARLGRPVSPHVEIYAFPITALSSITNRVTGIAMSGGFAAVGALSIVGADVPALLYSAQEVIPFFAPVSKFVVAFPISYHFLCGARQAV 118          
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|922863231|gb|KOO30708.1| (succinate dehydrogenase cytochrome b560 mitochondrial [Chrysochromulina sp. CCMP291])

HSP 1 Score: 87.4261 bits (215), Expect = 3.969e-19
Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 0
Query:   46 ETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSS-LGNSMVGVPAKVLFGFPLIFHYGSGLRHFV 138
             TY+E+   TGRP+SPH+TIY +P  A++S+  R TG +L++G  GI+ +AL  A +P   +  + +S +  P K   GFPL++H+   +RH V
Sbjct:   17 STYSEKMDATGRPISPHITIYAWPTIAISSVMMRATGMMLSIGTAGIAFMALPSATMPQDFAQYMASSSLAAPTKFAVGFPLVYHWFGAIRHAV 110          
BLAST of EWM21145.1 vs. NCBI_GenBank
Match: gi|397611682|gb|EJK61431.1| (hypothetical protein THAOC_18084 [Thalassiosira oceanica])

HSP 1 Score: 86.2705 bits (212), Expect = 4.088e-18
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 0
Query:   45 KETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTG---ISLLALGGADVPMLMSSLGNS--MVGVPAKVLFGFPLIFHYGSGLRHFV 138
            KE Y+ R A TGRP+SPHVTIY FP+ AL+SI+ RVTG +L+ G  G   + L+   GA V  LMS++G S  ++   AK    FP ++HY  G RH +
Sbjct:   88 KENYSARMAATGRPISPHVTIYSFPVGALSSITNRVTGVMLSFGAAGLGAVELVGGSGAGVD-LMSAIGGSGGVMAAGAKFAVAFPFVYHYMGGARHLI 185          
The following BLAST results are available for this feature:
BLAST of EWM21145.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101213|gb|EWM21145.1|1.619e-97100.00succinate dehydrogenase cytochrome b subunit [Nann... [more]
gi|585101212|gb|EWM21144.1|2.547e-93100.00succinate dehydrogenase cytochrome b subunit [Nann... [more]
gi|299470359|emb|CBN78408.1|4.105e-2758.95SDH3, succinate dehydrogenase subunit 3 [Ectocarpu... [more]
gi|325182722|emb|CCA17177.1|3.043e-2043.59transmembrane protein putative [Albugo laibachii N... [more]
gi|1072224552|gb|OEU09302.1|6.761e-2047.06succinate dehydrogenase cytochrome b subunit [Frag... [more]
gi|698795150|ref|XP_009830604.1|2.416e-1948.91succinate dehydrogenase, cytochrome b556 subunit [... [more]
gi|1210523243|dbj|GAX17880.1|2.563e-1945.83succinate dehydrogenase (ubiquinone) cytochrome b5... [more]
gi|673042921|ref|XP_008875421.1|3.266e-1947.87succinate dehydrogenase, cytochrome b556 subunit [... [more]
gi|922863231|gb|KOO30708.1|3.969e-1940.43succinate dehydrogenase cytochrome b560 mitochondr... [more]
gi|397611682|gb|EJK61431.1|4.088e-1847.47hypothetical protein THAOC_18084 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9557rna9557Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications