rna9552, rna9552 (mRNA) Nannochloropsis gaditana

Overview
Namerna9552
Unique Namerna9552
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1407
Alignment locationKK037254.1:157563..157853 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103873g1.4580.mrna
Orig protein idgnl|cribi|Naga_103873g1.4580
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:157563..157853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103873g1gene9274Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9552rna9552-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21152.1cds9521Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9552 ID=rna9552|Name=rna9552|organism=Nannochloropsis gaditana|type=mRNA|length=1407bp
ATGTAGCGTAGCGCTTGACGGTGAAAAATGAGTTTTCAGTGACCAAGGTG
GCGGTAAAATGCACTGCTACCGCATCCCTGCTTTCGCCTTGCACCTGTTA
GGAGCATTCTTTGTATTTTTAGGAAGGATGGCCTGGATATGACGGCGAGA
TTCTAGGTCCAGGTTTGTCTGCGTTTGTGCAAGCGCAATCGCATCGATGT
GATCCTGTGCTCTTCTGCTCAAGTCAACAAATTTGCGTTTCACTTCCCAC
AGAGGCATGGCATCGCAGCTTCTCACCCGTGTGTTGCAGCGGGGACTGCC
TCCCTCAGCCAGTCTTCGGTCGAGCATCCGCCCGGCCGTACAGGCTCCCC
TGGTACAGGCAAGCCTCGCATTGAGCAGCAGCAACAAATCTACTCCTCCC
GCCCCATTACAAGAACCCAAGACGAGCTTCTCAGAAGTCTTGGACAGGGC
GACGAACATTTTCTTCCTGACCGAGTTAATGCGTGGCTTTTGGCTGTCCT
TCGAGGTATCGATGAAGCCAAAAGTGACCATCAATTACCCTTTTGAAAAG
GGACACCTCTCACCGCGCTTTCGAGGAGAGCACGCCCTCCGCCGGTATCC
GAACGGAGAGGAACGCTGCATTGCGTGCAAGTTGTGCGAAGCCATTTGCC
CTGCGCAGGCCATCACTATCGAAGCAGAGCAACGGGCGGATGGGTCCAGG
AAGACCACCCGGTACGACATCGACATGACCAAGTGTATCTTCTGTGGCTT
CTGCCAGGAGGCTTGCCCGGTGGATGCCATTGTCGAGGGTCCTAATTTCG
AATTTGCAACGGAAACGCACGAAGAGCTGTTGTACGACAAGGAGAAGCTT
CTGGCCAACGGGGATAAATGGGAGGTGGCGATTGCGCGGAACTTGGCAGC
CGAGCATCTGTACCGATGAGGTGGAGTGGGATAGCAAGGAGAGGATGGGC
GGGAGTAGTGTCGGCGGGGAGGAGATGATAAAGGGTGTAAGATGATGAAG
GGGGGCAGGCATGATTGTCTGAATGAAGGAACGGGACGGAGCCTCGGAGG
CAAGGCGTGGGAGAGTGGCCCCGAGGAGTTTGAGTCTTGGTTGTGAAAGG
GGTGGCTGCATGGGAAGGGAGGCCAAACGCAGAAATTGGGCCGAGTAGTG
CACATGAAAAGGAGGGGGAAACTGGATTTGAAGAAAGAAAAGGTGACGAG
ATGAATCAGGCAGAGGAAGCGAGCACGGTCGCCTTCTTTCTCTGACTCCA
GAGCCTTTGACGGGAACCGATGCGGCCCAGGCGATCAACTTTGTTGCCCC
CCCCTTGGGGCCCTTCACTTTATACGGGCACTTAATAGCCCCTACCCCTG
CTTTCCGCCGAGGCTGAACCCTGGCGCCCGGTTGCGAGACGCGGCTTCAA
CACCGCC
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protein sequence of rna9552

>rna9552-protein ID=rna9552-protein|Name=rna9552|organism=Nannochloropsis gaditana|type=polypeptide|length=81bp
MWTRFWSISPNPSTWSALSPTRTSPASKTAFWSVWVSTAPSGWAYRACAT
NSLPPSPRTPPPPPPPPPPPPPSVGRAAHPP
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mRNA from alignment at KK037254.1:157563..157853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9552 ID=rna9552|Name=rna9552|organism=Nannochloropsis gaditana|type=mRNA|length=291bp|location=Sequence derived from alignment at KK037254.1:157563..157853- (Nannochloropsis gaditana)
ATGTGGACCAGATTCTGGAGCATCTCGCCGTGTTCTGGGCGCAGACGGAG
GTGATCCTCGAGGTGCTACTCCAGAAATCCGAGCACGTGGAGCGCTTTGT
CGCCTACTCGCACAAGCCCCGCCTCAAAGACCGCTTTCTGGAGCGTCTGG
GTGAGTACCGCGCCTTCTGGGTGGGCGTACAGGGCATGTGCCACCAATTC
ACTGCCGCCGTCTCCCAGAACCCCTCCTCCTCCTCCTCCCCCTCCTCCAC
CTCCTCCTCCCTCCGTGGGCCGGGCGGCTCATCCACCCTAG
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Coding sequence (CDS) from alignment at KK037254.1:157563..157853-

>rna9552 ID=rna9552|Name=rna9552|organism=Nannochloropsis gaditana|type=CDS|length=492bp|location=Sequence derived from alignment at KK037254.1:157563..157853- (Nannochloropsis gaditana)
AAATCCGAGCACGTGGAGCGCTTTGTCGCCTACTCGCACAAGCCCCGCCT
CAAAGACCGCTTTCTGGAGCGTCTGGGTGAGTACCGCGCCTTCTGGGTGG
GCGTACAGGGCATGTGCCACCAATTCACTGCCGCCGTCTCCCAGAACCCC
TCCTCCTCCTCCTCCCCCTCCTCCACCTCCTCCTCCCTCCGTGGGCCGGG
CGGCTCATCCACCCTAGATGTGGACCAGATTCTGGAGCATCTCGCCAAAT
CCGAGCACGTGGAGCGCTTTGTCGCCTACTCGCACAAGCCCCGCCTCAAA
GACCGCTTTCTGGAGCGTCTGGGTGAGTACCGCGCCTTCTGGGTGGGCGT
ACAGGGCATGTGCCACCAATTCACTGCCGCCGTCTCCCAGAACCCCTCCT
CCTCCTCCTCCCCCTCCTCCACCTCCTCCTCCCTCCGTGGGCCGGGCGGC
TCATCCACCCTAGATGTGGACCAGATTCTGGAGCATCTCGCC
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Synonyms
Publications