rna9551, rna9551 (mRNA) Nannochloropsis gaditana

Overview
Namerna9551
Unique Namerna9551
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1153
Alignment locationKK037254.1:155685..157091 +

Link to JBrowse

Properties
Property NameValue
Productnadh dehydrogenase
Orig transcript idgnl|cribi|Naga_100108g20.7745.mrna
Orig protein idgnl|cribi|Naga_100108g20.7745
GeneNUOI
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:155685..157091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NUOIgene9273Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9551rna9551-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21160.1cds9520Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9551 ID=rna9551|Name=rna9551|organism=Nannochloropsis gaditana|type=mRNA|length=1153bp
ACTGGCGGCGTTGGTCCAATTTACGGTTGACACATTTCAATATGCGTTAT
AGCGCAAGATCCATAAGCGTGCTGCTTTGGGTGCCAGCCCCCACTTATCA
TCACATGGTCGGGCATCACTCCTGTCCACCTGTCTGAGCGAAGATTGCCC
ACCCCATCGCTCTGAGCGTCCTACGGCCACCCACCGCTTTTCTCCACCTC
CTCCTCATACGTTTCCTGTTTGTCAGCCTGCCTCGTTCCCACGTTTAAGA
ATGTATATCACAGTGATGAAATCGCATTTCGGTCCAGGTTTGTCACGGCA
CTATCTGGTGAAATGGTGCGGTGCGCCCTCTTTTTCTTCATTCGCTCACT
ATTTATCACATATTGTCCCCCCATGCTTTTCCTCTTTTTCTTCTCGCTCT
TTGTGTTGTTTCCCCACGCAGAAAGAAGTCTTAGGACGCCCAAAATAATG
GCCGAGGACGATCCTATCATGGACGTGGCGGAGGGTGGAGAGGAGGGAGG
CGAGGAGGCGGCTGCCCCTGCCGTGGAGGAGGAGTTGGAGTTGAACGAAG
AGTCAGCTCTTCGCGGCGTTCTCCGCAAGGCGCTTGTGCACGATGGCCTT
CAACGTGGTCTGCATGAGAGTGCCAAGGCTCTCGATCGACACTCTGCTAA
ACTCTGCGTCCTCGCCCGCGACGTAGACTCGGACGAGTACAAGACGCTGG
TCACAGCGCTTTGCAAAGAAGGGAGTGTGCCTCTCCTCTACATCGAAACG
CGCGAGAAGCTCGGGGAGTACGTGGGCCTGGCCAAAATGGACAAGGAGGG
AAACCTGCGCGGTAAGGTGCAAAAGTGCTCGGTGGCCGTGGTCACGGACT
TCGGCGAGGAGTCTCGAGAGTACCACAAGCTGCAGGAATTCATCGCTAAG
AGCCAGGAATAAGCAGACTTCAAGGGCGCAATACTTCGTGCGAGCGAGTG
AAATGGTTTTTTTTCAACCTTACGCACCACTTTAATGTCTTGGTTTGGCT
CTGTAAGCGCGCGCTAGAACGAGAGGAACCTCCTTTCCTCGGAGGGGTTC
CCCACCCTTTTCCCCCTTGCCCATGTCCTCGACCCGTGCGATGAAAATGT
GCACGTGGACCATGGCAGTTAAGAAAAGAAGAAAGGGAAAGGGTATACAG
AAG
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protein sequence of rna9551

>rna9551-protein ID=rna9551-protein|Name=rna9551|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MASQLLTRVLQRGLPPSASLRSSIRPAVQAPLVQASLALSSSNKSTPPAP
LQEPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGH
LSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKT
TRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLA
NGDKWEVAIARNLAAEHLYR
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mRNA from alignment at KK037254.1:155685..157091+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9551 ID=rna9551|Name=rna9551|organism=Nannochloropsis gaditana|type=mRNA|length=1407bp|location=Sequence derived from alignment at KK037254.1:155685..157091+ (Nannochloropsis gaditana)
ATGTAGCGTAGCGCTTGACGGTGAAAAATGAGTTTTCAGTGACCAAGGTG
GCGGTAAAATGCACTGCTACCGCATCCCTGCTTTCGCCTTGCACCTGTTA
GGAGCATTCTTTGTATTTTTAGGAAGGATGGCCTGGATATGACGGCGAGA
TTCTAGGTCCAGGTTTGTCTGCGTTTGTGCAAGCGCAATCGCATCGATGT
GATCCTGTGCTCTTCTGCTCAAGTCAACAAATTTGCGTTTCACTTCCCAC
AGAGGCATGGCATCGCAGCTTCTCACCCGTGTGTTGCAGCGGGgactgcc
tccctcagccAGTCTTCGGTCGAGCATCCGCCCGGCCGTACAGGCTCCCC
TGGTACAGGCAAGCCTCGCAttgagcagcagcaacaaatctactcctccc
gccccattACAAGAACCCAAGACGAGCTTCTCAGAAGTCTTGGACAGGGC
GACGAACATTTTCTTCCTGACCGAGTTAATGCGTGGCTTTTGGCTGTCCT
TCGAGGTATCGATGAAGCCAAAAGTGACCATCAATTACCCTTTTGAAAAG
GGACACCTCTCACCGCGCTTTCGAGGAgagcacgccctccgccggtATCC
GAACGGAGAGGAACGCTGCATTGCGTGCAAGTTGTGCGAAGCCATTTGCC
CTGCGCAGGCCATCACTATCGAAGCAGAGCAACGGGCGGATGGGTCCAGG
AAGACCACCCGGTACGACATCGACATGACCAAGTGTATCTTCTGTGGCTT
CTGCCAGGAGGCTTGCCCGGTGGATGCCATTGTCGAGGGTCCTAATTTCG
AATTTGCAACGGAAACGCACGAAGAGCTGTTGTacgacaaggagaagctT
CTGGCCAACGGGGATAAATGGGAGGTGGCGATTGCGCGGAACTTGGCAGC
CGAGCATCTGTACCGATGAGGTGGAGTGGGATagcaaggagaggatgggc
gGGAGTAGtgtcggcggggaggagatgataAAGGGTGTAAGATGATGAAG
GGGGGCAGGCATGATTGTCTGAATGAAGGAACGGGACGGAGCCTCGGAGG
CAAGGCGTGGGAGAGTGGCCCCGAGGAGTTTGAGTCTTGGTTGTGAAAGG
GGTGGCTgcatgggaagggaggccaAACGCAGAAATTGGGCCGAGTAGTG
CacatgaaaaggagggggaaactGGATttgaagaaagaaaaggtgaCGAG
ATGAATCaggcagaggaagcgagcacggtcgccttctttctctgaCTCCA
GAGCCTTTGACGGGAACCGATGCGGCCCAGGCGATCAACTTTGTTGCCCC
CCCCTTGGGGCCCTTCACTTTATACGGGCACTTAATAGCCCCTACCCCTG
CTTTCCGCCGAGGCTGAACCCTGGCGCCCGGTTGCGAGACGCGGCTTCAA
CACCGCC
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Coding sequence (CDS) from alignment at KK037254.1:155685..157091+

>rna9551 ID=rna9551|Name=rna9551|organism=Nannochloropsis gaditana|type=CDS|length=663bp|location=Sequence derived from alignment at KK037254.1:155685..157091+ (Nannochloropsis gaditana)
ATGGCATCGCAGCTTCTCACCCGTGTGTTGCAGCGGGgactgcctccctc
agccAGTCTTCGGTCGAGCATCCGCCCGGCCGTACAGGCTCCCCTGGTAC
AGGCAAGCCTCGCAttgagcagcagcaacaaatctactcctcccgcccca
ttACAAGAACCCAAGACGAGCTTCTCAGAAGTCTTGGACAGGGCGACGAA
CATTTTCTTCCTGACCGAGTTAATGCGTGGCTTTTGGCTGTCCTTCGAGG
TATCGATGAAGCCAAAAGTGACCATCAATTACCCTTTTGAAAAGGGACAC
CTCTCACCGCGCTTTCGAGGAgagcacgccctccgccggtATCCGAACGG
AGAGGAACGCTGCATTGCGTGCAAGTTGTGCGAAGCCATTTGCCCTGCGC
AGGCCATCACTATCGAAGCAGAGCAACGGGCGGATGGGTCCAGGAAGACC
ACCCGGTACGACATCGACATGACCAAGTGTATCTTCTGTGGCTTCTGCCA
GGAGGCTTGCCCGGTGGATGCCATTGTCGAGGGTCCTAATTTCGAATTTG
CAACGGAAACGCACGAAGAGCTGTTGTacgacaaggagaagctTCTGGCC
AACGGGGATAAATGGGAGGTGGCGATTGCGCGGAACTTGGCAGCCGAGCA
TCTGTACCGATGA
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Synonyms
Publications