EWM21160.1, cds9520 (CDS) Nannochloropsis gaditana

Overview
NameEWM21160.1
Unique Namecds9520
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:155941..156603 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21160.1
Productnadh dehydrogenase
Orig transcript idgnl|cribi|Naga_100108g20.7745.mrna
GeneNUOI
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:155941..156603 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:00515394 iron, 4 sulfur cluster binding
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO:0051536iron-sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR0178964Fe4S_Fe-S-bd
IPR0179004Fe4S_Fe_S_CS
IPR010226NADH_quinone_OxRdtase_chainI
IPR0014504Fe4S-bd_dom
Homology
[Close]
BLAST of EWM21160.1 vs. NCBI_GenBank
Match: gi|553179292|ref|XP_005852679.1| (NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Nannochloropsis gaditana CCMP526] >gi|422295858|gb|EKU23157.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Nannochloropsis gaditana CCMP526] >gi|585101230|gb|EWM21160.1| nadh dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 457.218 bits (1175), Expect = 7.665e-163
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0 
Query:    1 MASQLLTRVLQRGLPPSASLRSSIRPAVQAPLVQASLALSSSNKSTPPAPLQEPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 220
            MASQLLTRVLQRGLPPSASLRSSIRPAVQAPLVQASLALSSSNKSTPPAPLQEPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR
Sbjct:    1 MASQLLTRVLQRGLPPSASLRSSIRPAVQAPLVQASLALSSSNKSTPPAPLQEPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 220
[Close]
BLAST of EWM21160.1 vs. NCBI_GenBank
Match: gi|1072237593|gb|OEU22320.1| (NADH-quinone oxidoreductase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 301.212 bits (770), Expect = 9.854e-101
Identity = 146/223 (65.47%), Postives = 171/223 (76.68%), Query Frame = 0 
Query:    1 MASQLLTRVLQRGLPPSASLRSSIRPAVQAPLVQASLALSSSNKSTPPAPLQEPK---TSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 220
            MAS  + +   RGL  +     +   A +      SLA +  + +T      E     T +  + DRA+ IFFLTE+ RGF L+FEVS+KPKVTINYPFE+G+LSPRFRGEHALRRYP G+ERCI+CKLCEAICPAQAITIEAE R DG+R+TTRYDIDMTKCI+CGFCQEACPVDAIVEGPN+EFATETHEELLYDKEKLL+NGDKWE  IA+NL +E LYR
Sbjct:    1 MASNFIRQSAYRGLVRTNGFYGTTTTAFR------SLATTPRSAATRDPDRNEDNILPTPWETIFDRASQIFFLTEIFRGFALAFEVSVKPKVTINYPFERGYLSPRFRGEHALRRYPTGDERCISCKLCEAICPAQAITIEAETREDGARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNYEFATETHEELLYDKEKLLSNGDKWEKQIAKNLMSEFLYR 217
[Close]
BLAST of EWM21160.1 vs. NCBI_GenBank
Match: gi|299470484|emb|CBN78476.1| (NUOI homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus siliculosus])

HSP 1 Score: 300.056 bits (767), Expect = 1.544e-100
Identity = 146/219 (66.67%), Postives = 170/219 (77.63%), Query Frame = 0 
Query:    2 ASQLLTRVLQRGLPPSASLRSSIRPAVQAPLVQASLALSSSNKSTPPAPLQEPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 220
            A  +L R L   +PP+     S++   ++   +A L + +         ++  +T     +DR +NI F+ E+ R  WLS EV  KPKVTINYPFEKG LSPRFRGEHALRRYP+GEERCI+CKLCEAICPAQAITIEAEQR DGSRKTTRYDIDMTKCI+CGFCQEACPVDAIVEGPN+EFATETHEELLYDKEKLLANGD+WEVAIA+NLAA+H YR
Sbjct:   30 AVAVLPRRLLSNMPPNPP---SVKSKERSEFREAKLPVDN---------IEFKETGLLTTIDRLSNIMFMAEIFRALWLSAEVFFKPKVTINYPFEKGPLSPRFRGEHALRRYPSGEERCISCKLCEAICPAQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 236
[Close]
BLAST of EWM21160.1 vs. NCBI_GenBank
Match: gi|23394377|gb|AAN31478.1| (NADH dehydrogenase [Phytophthora infestans])

HSP 1 Score: 296.204 bits (757), Expect = 2.894e-99
Identity = 143/213 (67.14%), Postives = 173/213 (81.22%), Query Frame = 0 
Query:    9 VLQRGLPPSASLRSSIRPAVQAPLVQASLALSSSNKSTPPAP-LQEPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 220
            VL+R     A+ +S  R A       A++A S+   +  PAP  Q+PK ++ EV+++ ++ FFL+++ R  WL++EV ++ KVTINYP+EKG LSPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIEAE RADG+R+TTRYDIDMTKCI+CGFCQEACPVDAIVEGPNFEFATE+HEELLYDK KLLANGDKWE  IA+NL+ E LYR
Sbjct:    5 VLRRSAAAVAAKQSLSRTA------PAAVAGSTRGFANIPAPGKQDPKPTWGEVIEKMSDTFFLSDVFRATWLAWEVHVERKVTINYPYEKGMLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATESHEELLYDKAKLLANGDKWEFEIAKNLSVEQLYR 211
[Close]
BLAST of EWM21160.1 vs. NCBI_GenBank
Match: gi|675199483|ref|XP_008908626.1| (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Phytophthora parasitica INRA-310] >gi|566019665|gb|ETI42576.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Phytophthora parasitica P1569] >gi|567956984|gb|ETK82594.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Phytophthora parasitica] >gi|567985644|gb|ETL35983.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Phytophthora parasitica] >gi|568015025|gb|ETL89202.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Phytophthora parasitica] >gi|568045305|gb|ETM42461.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Phytophthora parasitica] >gi|568091300|gb|ETN06124.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Phytophthora parasitica INRA-310] >gi|570323297|gb|ETO71245.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Phytophthora parasitica P1976] >gi|570947035|gb|ETP12292.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Phytophthora parasitica CJ01A1] >gi|970643725|gb|KUF84859.1| NADH dehydrogenase [Phytophthora nicotianae] >gi|970645205|gb|KUF85741.1| hypothetical protein AM588_10000998 [Phytophthora nicotianae])

HSP 1 Score: 295.434 bits (755), Expect = 5.342e-99
Identity = 136/187 (72.73%), Postives = 163/187 (87.17%), Query Frame = 0 
Query:   35 ASLALSSSNKSTPPAPLQ-EPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 220
            A++A S+   +  PAP + +PK ++ EV+++ ++ FFL+++ R  WL++EV ++ KVTINYP+EKG LSPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIEAE RADG+R+TTRYDIDMTKCI+CGFCQEACPVDAIVEGPNFEFATETHEELLYDK KLLANGDKWE  IA+NL+ E LYR
Sbjct:   25 AAVAGSARGFANIPAPGKVDPKPTWGEVIEKMSDTFFLSDVFRATWLAWEVHVERKVTINYPYEKGMLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKAKLLANGDKWEFEIAKNLSVEQLYR 211
[Close]
BLAST of EWM21160.1 vs. NCBI_GenBank
Match: gi|1173960641|gb|OQS06748.1| (NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 295.049 bits (754), Expect = 5.419e-99
Identity = 139/190 (73.16%), Postives = 161/190 (84.74%), Query Frame = 0 
Query:   31 PLVQASLALSSSNKSTPPAPLQEPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 220
            PL++A+ + S S        +Q+P  + +EV+++A N+FFL E+ R  WL+FE+ ++ KVTINYPFEKG LSPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIEAE RADGSR+TTRYDIDMTKCI+CGFCQEACPVDAIVEGPNFEFATETHEELLY+K KLLANGDKWE  IA NL+ E LYR
Sbjct:   12 PLLRAAPSASFSTDPRDSPVIQKP--TLNEVVEKAANLFFLGEIFRATWLAFEIHLEKKVTINYPFEKGLLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYNKAKLLANGDKWEFEIAHNLSVEQLYR 199
[Close]
BLAST of EWM21160.1 vs. NCBI_GenBank
Match: gi|953503128|emb|CEG35896.1| (nadh dehydrogenase [Plasmopara halstedii])

HSP 1 Score: 295.049 bits (754), Expect = 7.420e-99
Identity = 136/187 (72.73%), Postives = 160/187 (85.56%), Query Frame = 0 
Query:   37 LALSSSNKSTPPAPLQ---EPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 220
            +A S S +     P Q   +PK+++SEV+++ +N FFL+++ R  WL++E+ ++ KVTINYPFEKG LSPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIEAE RADG+R+TTRYDIDMTKCI+CGFCQEACPVDAIVEGPNFEFATETHEELLYDK KLL NGDKWE  IA+NL+ E LYR
Sbjct:   25 IAFSDSVRGFANVPAQGKPDPKSTWSEVIEKMSNTFFLSDVFRATWLAWEMHVERKVTINYPFEKGMLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKAKLLENGDKWEFEIAKNLSVEQLYR 211
[Close]
BLAST of EWM21160.1 vs. NCBI_GenBank
Match: gi|1214674040|gb|OWY96517.1| (NADH dehydrogenase [Phytophthora megakarya])

HSP 1 Score: 294.664 bits (753), Expect = 7.938e-99
Identity = 140/201 (69.65%), Postives = 168/201 (83.58%), Query Frame = 0 
Query:   21 RSSIRPAVQAPLVQASLALSSSNKSTPPAPLQ-EPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 220
            RS+   A +  + +A+ A   +N    PAP Q +PK ++ EV+++ ++ FFL+++ R  WLS+EV ++ KVTINYP+EKG LSPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIEAE RADG+R+TTRYDIDMTKCI+CGFCQEACPVDAIVEGPNFEFATE+HEELLYDK KLLANGDKWE  IA+NL+ E LYR
Sbjct:    8 RSAAAVAAKQSVSRATAARGFANV---PAPGQLDPKPTWGEVIEKMSDTFFLSDVFRATWLSWEVHVERKVTINYPYEKGMLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATESHEELLYDKAKLLANGDKWEFEIAKNLSVEQLYR 205
[Close]
BLAST of EWM21160.1 vs. NCBI_GenBank
Match: gi|673036526|ref|XP_008872224.1| (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Aphanomyces invadans] >gi|574471790|gb|ETV98796.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Aphanomyces invadans])

HSP 1 Score: 293.508 bits (750), Expect = 1.727e-98
Identity = 136/190 (71.58%), Postives = 157/190 (82.63%), Query Frame = 0 
Query:   31 PLVQASLALSSSNKSTPPAPLQEPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 220
            PL++++ ++S S  S+   P      +  EV+D+A N+FFL E+ R  WL++E+  + K TINYPFEKG LSPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIEAE R DG+R+TTRYDIDMTKCI+CGFCQEACPVDAIVEGPNFEFATETHEELLYDK KLLANGDKWE  IA NL+ E LYR
Sbjct:   15 PLMRSATSMSFSTDSSMKKP------TLGEVVDKAANLFFLGEIARATWLAWEIHTQKKTTINYPFEKGQLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPREDGARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKAKLLANGDKWEFEIAHNLSVEQLYR 198
[Close]
BLAST of EWM21160.1 vs. NCBI_GenBank
Match: gi|301098846|ref|XP_002898515.1| (NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor [Phytophthora infestans T30-4] >gi|262104940|gb|EEY62992.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor [Phytophthora infestans T30-4])

HSP 1 Score: 293.893 bits (751), Expect = 2.342e-98
Identity = 142/213 (66.67%), Postives = 172/213 (80.75%), Query Frame = 0 
Query:    9 VLQRGLPPSASLRSSIRPAVQAPLVQASLALSSSNKSTPPAP-LQEPKTSFSEVLDRATNIFFLTELMRGFWLSFEVSMKPKVTINYPFEKGHLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEQRADGSRKTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLANGDKWEVAIARNLAAEHLYR 220
            VL+R     A+ +S  R A       A++A S+   +  PAP  Q+PK ++ EV+++ ++ FFL+++ R  WL++EV ++ KVTINYP+EKG LSPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIEAE RADG+R+TT YDIDMTKCI+CGFCQEACPVDAIVEGPNFEFATE+HEELLYDK KLLANGDKWE  IA+NL+ E LYR
Sbjct:    5 VLRRSAAAVAAKQSLSRTA------PAAVAGSTRGFANIPAPGKQDPKPTWGEVIEKMSDTFFLSDVFRATWLAWEVHVERKVTINYPYEKGMLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGARRTTSYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATESHEELLYDKAKLLANGDKWEFEIAKNLSVEQLYR 211
The following BLAST results are available for this feature:
BLAST of EWM21160.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179292|ref|XP_005852679.1|7.665e-163100.00NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Na... [more]
gi|1072237593|gb|OEU22320.1|9.854e-10165.47NADH-quinone oxidoreductase [Fragilariopsis cylind... [more]
gi|299470484|emb|CBN78476.1|1.544e-10066.67NUOI homolog, NADH dehydrogenase (ubiquinone) subu... [more]
gi|23394377|gb|AAN31478.1|2.894e-9967.14NADH dehydrogenase [Phytophthora infestans][more]
gi|675199483|ref|XP_008908626.1|5.342e-9972.73NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
gi|1173960641|gb|OQS06748.1|5.419e-9973.16NADH dehydrogenase iron-sulfur protein 8, mitochon... [more]
gi|953503128|emb|CEG35896.1|7.420e-9972.73nadh dehydrogenase [Plasmopara halstedii][more]
gi|1214674040|gb|OWY96517.1|7.938e-9969.65NADH dehydrogenase [Phytophthora megakarya][more]
gi|673036526|ref|XP_008872224.1|1.727e-9871.58NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
gi|301098846|ref|XP_002898515.1|2.342e-9866.67NADH dehydrogenase iron-sulfur protein 8, mitochon... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9551rna9551Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications