rna9550, rna9550 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9550
Unique Name	rna9550
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1589
Alignment location	KK037254.1:154428..155580 -

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Properties


Property Name	Value
Product	40s ribosomal protein s12
Orig transcript id	gnl\|cribi\|Naga_100108g19.7738.mrna
Orig protein id	gnl\|cribi\|Naga_100108g19.7738
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:154428..155580 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100108g19	gene9272	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21153.1	cds9519	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9550	rna9550-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:154428..155580-
coding sequence from alignment at KK037254.1:154428..155580-

mRNA sequence

>rna9550 ID=rna9550|Name=rna9550|organism=Nannochloropsis gaditana|type=mRNA|length=1589bp
GACATGGGCAATCCCCACGTGCCGCGCCTTAGGTCGCGACGAGTACGCCT
TTACAAGCTACGATTGATTGTATGGGCATACAGGTAACGGCGTGCTCAAC
GGAGCATGTACGACTTGCGCTGTGATATACAGGAAAGCCAACGCACAATC
AAACGTACCGGGAGACATTGCTCTGCTCTCACACATCAAATTCACGGGCT
GCATCATGAGATGCGTATCCCGCGCACATCTTTGGGTGTGACAACATGGC
ATTGGAGTCTTGAGGGCATTACAACCTCGCAAAGTCGACAACCTTCAAGC
GCTCAAATTGCAGGGATTCGGATGGTAGCAGCAGAGCAACCGGGTGTCAT
GGCCACATTAAGCCCGCCCATCTCAGCGCTGATTGCGTGGACTGTTATAT
GTGGAACGGTAATCGTTCTCACGAACATCGCGAAGGTCACAAAATACATC
GACAAGGACAATGCAGGGATTGCCGTGGTATTCACGATTACCGCTGGGAT
CTGCACTTTTATACTCTGGTTGGTCACGTGGATGCAGCAATGGCACCCGC
TTTTGACGCCTACCCTCCCTGCCAAGGAATGAAGCTGTGGGTCGCGTACG
ACTTTTTTTCACTCGTCGGAGGCCGTTAGCTTGTGTATCTATTTGCATTC
AAGAGAGCGGGGGTTCAGGAAGATGTGACATCCAAGAAGATGAAAATTTA
TCACGGGGAAAAGCAAAGAACAAATTTGTTCACGGCATGATGCCGACCAC
CATGTGCTTTTTTCTTCATGGTCGGCTCGCAAATTGACTTGATTTGTCCA
GTTCCACACGGTGATTTCGCATTGCTTTGACGGCGCGGGGCGCACTGGAA
AGCAACCTCTCAACCTCCTGCCCCCTCCCTGGAGGGCCGCACATAGACCA
ACTAAGGACACCGCCCGCGCTGTTGTTCCGATGCCGGTAGCTGCTCAATT
ATTTCTCGTATCTATACAGTCTAGAAATATAGCAGTTTGTTGTGCAAGGG
ACGCCTTGCTCGAAGGGTGTCATGTTGGTTGGCAAGGCGCTTCCTGTCCT
CTTCTCCGTCTTCCTGGTCATAACAACACTCATTAATATCGTCGTGGATG
CTGCATCGGGCTTCCCTTTCTCTCTGGGTATCCGGGACAGCATCATGATT
GCTCATTCATTCAAGGGGGAGCAGTTTGGCCCCGCTCAAAATATTCACGG
TGCCACGTACACCGTGGACGTTACCTTCCGTAGTAAAAACCTGGTGCCGA
AAAACAATTGGGTAATTGACATCGGGGAGGCGTCCACGGCGCTGAGCCGC
ATTCTAAGCAAGTACAACTTTAAAAACCTAGACCAGGTCTTCCCCGAGGG
GGAGAACACGACGACGGAGTTCATGTGCCGTGCCATCCACCGAGACTTGG
CTGCGCATTTTTGCACCAATCGGGCCAAGAGCAAGGAAGAGCGTTTCAAG
GGCTCCATTTGTGTCAAGCTTTGGGAGAGTCACAAAGCGTGGGCTTGTTA
TGAGGCCATTGTCTGAGGAGACGGGACGAAGGATGCTGGGCTTACAAGGG
GGGGAAGGAAATTACTACCGCAAAATTAAATCCTAGACT

protein sequence of rna9550

>rna9550-protein ID=rna9550-protein|Name=rna9550|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MVRCALFFFIRSLFITYCPPMLFLFFFSLFVLFPHAERSLRTPKIMAEDD
PIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGL
HESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKL
GEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE

mRNA from alignment at KK037254.1:154428..155580-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9550 ID=rna9550|Name=rna9550|organism=Nannochloropsis gaditana|type=mRNA|length=1153bp|location=Sequence derived from alignment at KK037254.1:154428..155580- (Nannochloropsis gaditana)
ACTGGCGGCGTTGGTCCAATTTACGGTTGACACATTTCAATATGCGTTAT
AGCGCAAGATCCATAAGCGTGCTGCTTTGGGTGCCAGCCCCCACTTATCA
TCACATGGTCGGGCATCACTCCTGTCCACCTGTCTGAGCGAAGATTGCCC
ACCCCATCGCTCTGAGCGTCCTACGGCCACCCACCGCTTTTCTCCACCTC
CTCCTCATACGTTTCCTGTTTGTCAGCCTGCCTCGTTCCCACGTTTAAGA
ATGTATATCACAGTGATGAAATCGCATTTCGGTCCAGGTTTGTCACGGCA
CTATCTGGTGAAATGGTGCGGTGCGCCCTCTTTTTCTTCATTCGCTCACT
ATTTATCACATATTGTCCCCCCATGCTTTTCCTCTTTTTCTTCTCGCTCT
TTGTGTTGTTTCCCCACGCAGAAAGAAGTCTTAGGACGCCCAAAATAATG
GCCGAGGACGATCCTATCATGGACGTGGCGGAGGGTGGAGAGGAGGGAGG
CGAGGAGGCGGCTGCCCCTGCCGTGGAGGAGGAGTTGGAGTTGAACGAAG
AGTCAGCTCTTCGCGGCGTTCTCCGCAAGGCGCTTGTGCACGATGGCCTT
CAACGTGGTCTGCATGAGAGTGCCAAGGCTCTCGATCGACACTCTGCTAA
ACTCTGCGTCCTCGCCCGCGACGTAGACTCGGACGAGTACAAGACGCTGG
TCACAGCGCTTTGCAAAGAAGGGAGTGTGCCTCTCCTCTACATCGAAACG
CGCGAGAAGCTCGGGGAGTACGTGGGCCTGGCCAAAATGGACAAGGAGGG
AAACCTGCGCGGTAAGGTGCAAAAGTGCTCGGTGGCCGTGGTCACGGACT
TCGGCGAGGAGTCTCGAGAGTACCACAAGCTGCAGGAATTCATCGCTAAG
AGCCAGGAATAAGCAGACTTCAAGGGCGCAATACTTCGTGCGAGCGAGTG
AAATGGTTTTTTTTCAACCTTACGCACCACTTTAATGTCTTGGTTTGGCT
CTGTAAGCGCGCGCTAGAACGAGAGGAACCTCCTTTCCTCGGAGGGGTTC
CCCACCCTTTTCCCCCTTGCCCATGTCCTCGACCCGTGCGATGAAAATGT
GCACGTGGACCATGGCAGTTAAGAAAAGAAGAAAGGGAAAGGGTATACAG
AAG

Coding sequence (CDS) from alignment at KK037254.1:154428..155580-

>rna9550 ID=rna9550|Name=rna9550|organism=Nannochloropsis gaditana|type=CDS|length=600bp|location=Sequence derived from alignment at KK037254.1:154428..155580- (Nannochloropsis gaditana)
ATGGTGCGGTGCGCCCTCTTTTTCTTCATTCGCTCACTATTTATCACATA
TTGTCCCCCCATGCTTTTCCTCTTTTTCTTCTCGCTCTTTGTGTTGTTTC
CCCACGCAGAAAGAAGTCTTAGGACGCCCAAAATAATGGCCGAGGACGAT
CCTATCATGGACGTGGCGGAGGGTGGAGAGGAGGGAGGCGAGGAGGCGGC
TGCCCCTGCCGTGGAGGAGGAGTTGGAGTTGAACGAAGAGTCAGCTCTTC
GCGGCGTTCTCCGCAAGGCGCTTGTGCACGATGGCCTTCAACGTGGTCTG
CATGAGAGTGCCAAGGCTCTCGATCGACACTCTGCTAAACTCTGCGTCCT
CGCCCGCGACGTAGACTCGGACGAGTACAAGACGCTGGTCACAGCGCTTT
GCAAAGAAGGGAGTGTGCCTCTCCTCTACATCGAAACGCGCGAGAAGCTC
GGGGAGTACGTGGGCCTGGCCAAAATGGACAAGGAGGGAAACCTGCGCGG
TAAGGTGCAAAAGTGCTCGGTGGCCGTGGTCACGGACTTCGGCGAGGAGT
CTCGAGAGTACCACAAGCTGCAGGAATTCATCGCTAAGAGCCAGGAATAA

Synonyms

Publications