EWM21153.1, cds9519 (CDS) Nannochloropsis gaditana

Overview
NameEWM21153.1
Unique Namecds9519
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:154669..155268 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21153.1
Product40s ribosomal protein s12
Orig transcript idgnl|cribi|Naga_100108g19.7738.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:154669..155268 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
IPR000530Ribosomal_S12e
Homology
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|585101223|gb|EWM21153.1| (40s ribosomal protein s12 [Nannochloropsis gaditana])

HSP 1 Score: 403.29 bits (1035), Expect = 3.088e-142
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MVRCALFFFIRSLFITYCPPMLFLFFFSLFVLFPHAERSLRTPKIMAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 199
            MVRCALFFFIRSLFITYCPPMLFLFFFSLFVLFPHAERSLRTPKIMAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE
Sbjct:    1 MVRCALFFFIRSLFITYCPPMLFLFFFSLFVLFPHAERSLRTPKIMAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 199          
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|553179283|ref|XP_005852676.1| (small subunit ribosomal protein S12e [Nannochloropsis gaditana CCMP526] >gi|422295855|gb|EKU23154.1| small subunit ribosomal protein S12e [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 307.375 bits (786), Expect = 5.151e-105
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:   46 MAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 199
            MAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE
Sbjct:    1 MAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 154          
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|901813186|gb|KMZ67677.1| (40S ribosomal protein S12 [Zostera marina])

HSP 1 Score: 129.798 bits (325), Expect = 3.446e-35
Identity = 72/153 (47.06%), Postives = 103/153 (67.32%), Query Frame = 0
Query:   46 MAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQ 198
            M+++ P++ VAE          APA+ E ++L   +AL+ VL+KAL HDG+ RGLHE AKA+++H+A+LC+LA D D  +Y  LV ALC + +V L+ + + + LGE+VGL K+D EG  R KV  CS  VV D+GEES   H +QE++ KSQ
Sbjct:    1 MSDEAPVIPVAE----------APALGEPMDLM--TALQLVLKKALAHDGISRGLHEVAKAIEKHAAQLCILAEDCDQPDYVKLVKALCADHNVHLVAVPSAKTLGEWVGLCKIDSEGKAR-KVVGCSCVVVKDYGEESEGLHIVQEYV-KSQ 139          
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|769810029|ref|XP_011624036.1| (40S ribosomal protein S12 [Amborella trichopoda])

HSP 1 Score: 127.487 bits (319), Expect = 3.375e-34
Identity = 62/130 (47.69%), Postives = 93/130 (71.54%), Query Frame = 0
Query:   65 EAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFI 194
            EA+ PA+ E +++   +AL+ VL+K+LVHDG+ RGLHE+AK +++H+A+LCVLA D D  +Y  LV A+C + +V L+ + + + LGE+VGL K+D EG  R KV  CS  V+ D+GEES   H +QE++
Sbjct:   13 EASGPALGEPMDIM--TALQLVLKKSLVHDGIARGLHEAAKVIEKHAAQLCVLAEDCDQPDYVKLVRAICADNNVSLITVPSAKTLGEWVGLCKIDSEGKAR-KVVGCSCVVIKDYGEESEGLHIVQEYV 139          
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|672122880|ref|XP_008784784.1| (PREDICTED: 40S ribosomal protein S12-like isoform X2 [Phoenix dactylifera])

HSP 1 Score: 126.716 bits (317), Expect = 6.426e-34
Identity = 66/130 (50.77%), Postives = 92/130 (70.77%), Query Frame = 0
Query:   65 EAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFI 194
            E AAPA+ E ++L   +AL+ VL+K+L HDGL RGLHE+AKA+++H+A+LCVLA D D  +Y  LV ALC E +V L+ + + + LGE+ GL K+D EG  R KV  CS  V+ D+GEES   H +QE++
Sbjct:    8 ETAAPALGEPMDLM--TALQLVLKKSLAHDGLVRGLHEAAKAVEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWSGLCKIDSEGKAR-KVVGCSCVVIKDYGEESEGLHIVQEYV 134          
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|629689575|ref|XP_007810079.1| (40S ribosomal protein S12 [Metarhizium acridum CQMa 102] >gi|629722520|ref|XP_007822095.1| Ribosomal protein S12e [Metarhizium robertsii ARSEF 23] >gi|953413352|ref|XP_014549083.1| Ribosomal protein S12e, partial [Metarhizium brunneum ARSEF 3297] >gi|953476911|ref|XP_014581930.1| Ribosomal protein S12e, partial [Metarhizium majus ARSEF 297] >gi|322698454|gb|EFY90224.1| 40S ribosomal protein S12 [Metarhizium acridum CQMa 102] >gi|322707188|gb|EFY98767.1| Ribosomal protein S12e [Metarhizium robertsii ARSEF 23] >gi|594721188|gb|EXV04075.1| ribosomal protein L7Ae/L30e/S12e/Gadd45 [Metarhizium robertsii] >gi|672375267|gb|KFG77606.1| 40S ribosomal protein S12 [Metarhizium anisopliae] >gi|743648919|gb|KID79945.1| Ribosomal protein S12e, partial [Metarhizium brunneum ARSEF 3297] >gi|743663806|gb|KID90978.1| Ribosomal protein S12e [Metarhizium guizhouense ARSEF 977] >gi|743676022|gb|KIE02937.1| Ribosomal protein S12e, partial [Metarhizium majus ARSEF 297])

HSP 1 Score: 126.716 bits (317), Expect = 8.864e-34
Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 0
Query:   64 EEAAAPAVEEELELNEES---------ALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQ 198
            EE  AP V EE+E++ ++         AL+GVL+ AL+HDGL RGL E++KALDR  A +CVL  + + D YK LV ALC E  +PL+ ++  ++LGE+ GL  +D+EGN R KV  CS  VV D+GEES+E   L  +   SQ
Sbjct:    5 EENNAPEVSEEVEVSADAPKGQMSVLDALKGVLKLALMHDGLARGLREASKALDRRQAHMCVLNENCEEDAYKKLVAALCDEHKIPLIKVQDGKQLGEWAGLCVLDREGNAR-KVVNCSCVVVKDWGEESQERSILLNYFQTSQ 147          
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|298705060|emb|CBJ28519.1| (ribosomal protein S12 [Ectocarpus siliculosus])

HSP 1 Score: 126.331 bits (316), Expect = 8.890e-34
Identity = 68/134 (50.75%), Postives = 94/134 (70.15%), Query Frame = 0
Query:   64 EEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKS 197
            EE  +P VE + E++   AL+ VL+KAL+ DGL+RGLHE AKALDR SA+LC LA+D D+ EY  LV ALC EG+V L+ ++TR++LG++ GL K+  EG    K+  CS AVVTD+GE+++    L E + K 
Sbjct:    8 EETGSPEVEVK-EISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCDNPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEAT-KIVPCSCAVVTDYGEQTQALGVLLEHLKKG 139          
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|1091667352|ref|XP_009380781.2| (PREDICTED: 40S ribosomal protein S12-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 128.642 bits (322), Expect = 8.895e-34
Identity = 73/163 (44.79%), Postives = 105/163 (64.42%), Query Frame = 0
Query:   34 PHAERSLRTPKIMAEDDPIMDVAEGGEEGGEEA--AAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFI 194
            PH E  +R P      D ++   E  E  GEEA   APA+ E ++L   +AL+ V++K+L HDGL RGLHE+AKA+++H+A+LC+LA D +  +Y  LV ALC + +V L+ + + + LGE+ GL K+D EG  R KV  CS  VV D+GEES   H +QE++
Sbjct:   51 PHLETLIRRP-----SDHVLIEIELKEMAGEEAEKTAPALGEPMDLM--TALQLVMKKSLAHDGLVRGLHEAAKAIEKHAAQLCILAEDCNQADYVKLVKALCADHNVHLVTVPSAKTLGEWAGLCKIDSEGKAR-KVVGCSCVVVKDYGEESEGLHIVQEYV 205          
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|549056235|emb|CCX05047.1| (Similar to 40S ribosomal protein S12; acc. no. O59936 [Pyronema omphalodes CBS 100304])

HSP 1 Score: 126.716 bits (317), Expect = 9.017e-34
Identity = 69/142 (48.59%), Postives = 92/142 (64.79%), Query Frame = 0
Query:   61 EGGEEAAAPAVEEELE---------LNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEF 193
            + GEE     V EE+E         ++ E AL+GVLR ALVHDGL RGL E++KALDR  A +CVL  + D + YK LV ALC E ++PL+ +   +KLGE+ GL  +D+EGN R KV  CS  VV D+GEES+E + L ++
Sbjct:    3 DAGEEVPQVEVSEEIEVAADAPKGQMSVEDALKGVLRHALVHDGLARGLREASKALDRRQAHMCVLNENCDEEAYKKLVEALCAEHNIPLIKVADGKKLGEWAGLCVLDREGNAR-KVVNCSCCVVKDWGEESQERNVLLQY 143          
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|770402131|gb|KJK87201.1| (hypothetical protein H633G_08958 [Metarhizium anisopliae BRIP 53284])

HSP 1 Score: 127.487 bits (319), Expect = 1.234e-33
Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 0
Query:   64 EEAAAPAVEEELELNEES---------ALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQ 198
            EE  AP V EE+E++ ++         AL+GVL+ AL+HDGL RGL E++KALDR  A +CVL  + + D YK LV ALC E  +PL+ ++  ++LGE+ GL  +D+EGN R KV  CS  VV D+GEES+E   L  +   SQ
Sbjct:   36 EENNAPEVSEEVEVSADAPKGQMSVLDALKGVLKLALMHDGLARGLREASKALDRRQAHMCVLNENCEEDAYKKLVAALCDEHKIPLIKVQDGKQLGEWAGLCVLDREGNAR-KVVNCSCVVVKDWGEESQERSILLNYFQTSQ 178          
The following BLAST results are available for this feature:
BLAST of EWM21153.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101223|gb|EWM21153.1|3.088e-142100.0040s ribosomal protein s12 [Nannochloropsis gaditan... [more]
gi|553179283|ref|XP_005852676.1|5.151e-105100.00small subunit ribosomal protein S12e [Nannochlorop... [more]
gi|901813186|gb|KMZ67677.1|3.446e-3547.0640S ribosomal protein S12 [Zostera marina][more]
gi|769810029|ref|XP_011624036.1|3.375e-3447.6940S ribosomal protein S12 [Amborella trichopoda][more]
gi|672122880|ref|XP_008784784.1|6.426e-3450.77PREDICTED: 40S ribosomal protein S12-like isoform ... [more]
gi|629689575|ref|XP_007810079.1|8.864e-3447.2240S ribosomal protein S12 [Metarhizium acridum CQM... [more]
gi|298705060|emb|CBJ28519.1|8.890e-3450.75ribosomal protein S12 [Ectocarpus siliculosus][more]
gi|1091667352|ref|XP_009380781.2|8.895e-3444.79PREDICTED: 40S ribosomal protein S12-like [Musa ac... [more]
gi|549056235|emb|CCX05047.1|9.017e-3448.59Similar to 40S ribosomal protein S12; acc. no. O59... [more]
gi|770402131|gb|KJK87201.1|1.234e-3347.22hypothetical protein H633G_08958 [Metarhizium anis... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9550rna9550Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications