EWM21153.1, cds9519 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|585101223|gb|EWM21153.1| (40s ribosomal protein s12 [Nannochloropsis gaditana]) HSP 1 Score: 403.29 bits (1035), Expect = 3.088e-142 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 Query: 1 MVRCALFFFIRSLFITYCPPMLFLFFFSLFVLFPHAERSLRTPKIMAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 199 MVRCALFFFIRSLFITYCPPMLFLFFFSLFVLFPHAERSLRTPKIMAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE Sbjct: 1 MVRCALFFFIRSLFITYCPPMLFLFFFSLFVLFPHAERSLRTPKIMAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 199
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|553179283|ref|XP_005852676.1| (small subunit ribosomal protein S12e [Nannochloropsis gaditana CCMP526] >gi|422295855|gb|EKU23154.1| small subunit ribosomal protein S12e [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 307.375 bits (786), Expect = 5.151e-105 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0 Query: 46 MAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 199 MAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE Sbjct: 1 MAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQE 154
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|901813186|gb|KMZ67677.1| (40S ribosomal protein S12 [Zostera marina]) HSP 1 Score: 129.798 bits (325), Expect = 3.446e-35 Identity = 72/153 (47.06%), Postives = 103/153 (67.32%), Query Frame = 0 Query: 46 MAEDDPIMDVAEGGEEGGEEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQ 198 M+++ P++ VAE APA+ E ++L +AL+ VL+KAL HDG+ RGLHE AKA+++H+A+LC+LA D D +Y LV ALC + +V L+ + + + LGE+VGL K+D EG R KV CS VV D+GEES H +QE++ KSQ Sbjct: 1 MSDEAPVIPVAE----------APALGEPMDLM--TALQLVLKKALAHDGISRGLHEVAKAIEKHAAQLCILAEDCDQPDYVKLVKALCADHNVHLVAVPSAKTLGEWVGLCKIDSEGKAR-KVVGCSCVVVKDYGEESEGLHIVQEYV-KSQ 139
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|769810029|ref|XP_011624036.1| (40S ribosomal protein S12 [Amborella trichopoda]) HSP 1 Score: 127.487 bits (319), Expect = 3.375e-34 Identity = 62/130 (47.69%), Postives = 93/130 (71.54%), Query Frame = 0 Query: 65 EAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFI 194 EA+ PA+ E +++ +AL+ VL+K+LVHDG+ RGLHE+AK +++H+A+LCVLA D D +Y LV A+C + +V L+ + + + LGE+VGL K+D EG R KV CS V+ D+GEES H +QE++ Sbjct: 13 EASGPALGEPMDIM--TALQLVLKKSLVHDGIARGLHEAAKVIEKHAAQLCVLAEDCDQPDYVKLVRAICADNNVSLITVPSAKTLGEWVGLCKIDSEGKAR-KVVGCSCVVIKDYGEESEGLHIVQEYV 139
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|672122880|ref|XP_008784784.1| (PREDICTED: 40S ribosomal protein S12-like isoform X2 [Phoenix dactylifera]) HSP 1 Score: 126.716 bits (317), Expect = 6.426e-34 Identity = 66/130 (50.77%), Postives = 92/130 (70.77%), Query Frame = 0 Query: 65 EAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFI 194 E AAPA+ E ++L +AL+ VL+K+L HDGL RGLHE+AKA+++H+A+LCVLA D D +Y LV ALC E +V L+ + + + LGE+ GL K+D EG R KV CS V+ D+GEES H +QE++ Sbjct: 8 ETAAPALGEPMDLM--TALQLVLKKSLAHDGLVRGLHEAAKAVEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWSGLCKIDSEGKAR-KVVGCSCVVIKDYGEESEGLHIVQEYV 134
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|629689575|ref|XP_007810079.1| (40S ribosomal protein S12 [Metarhizium acridum CQMa 102] >gi|629722520|ref|XP_007822095.1| Ribosomal protein S12e [Metarhizium robertsii ARSEF 23] >gi|953413352|ref|XP_014549083.1| Ribosomal protein S12e, partial [Metarhizium brunneum ARSEF 3297] >gi|953476911|ref|XP_014581930.1| Ribosomal protein S12e, partial [Metarhizium majus ARSEF 297] >gi|322698454|gb|EFY90224.1| 40S ribosomal protein S12 [Metarhizium acridum CQMa 102] >gi|322707188|gb|EFY98767.1| Ribosomal protein S12e [Metarhizium robertsii ARSEF 23] >gi|594721188|gb|EXV04075.1| ribosomal protein L7Ae/L30e/S12e/Gadd45 [Metarhizium robertsii] >gi|672375267|gb|KFG77606.1| 40S ribosomal protein S12 [Metarhizium anisopliae] >gi|743648919|gb|KID79945.1| Ribosomal protein S12e, partial [Metarhizium brunneum ARSEF 3297] >gi|743663806|gb|KID90978.1| Ribosomal protein S12e [Metarhizium guizhouense ARSEF 977] >gi|743676022|gb|KIE02937.1| Ribosomal protein S12e, partial [Metarhizium majus ARSEF 297]) HSP 1 Score: 126.716 bits (317), Expect = 8.864e-34 Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 0 Query: 64 EEAAAPAVEEELELNEES---------ALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQ 198 EE AP V EE+E++ ++ AL+GVL+ AL+HDGL RGL E++KALDR A +CVL + + D YK LV ALC E +PL+ ++ ++LGE+ GL +D+EGN R KV CS VV D+GEES+E L + SQ Sbjct: 5 EENNAPEVSEEVEVSADAPKGQMSVLDALKGVLKLALMHDGLARGLREASKALDRRQAHMCVLNENCEEDAYKKLVAALCDEHKIPLIKVQDGKQLGEWAGLCVLDREGNAR-KVVNCSCVVVKDWGEESQERSILLNYFQTSQ 147
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|298705060|emb|CBJ28519.1| (ribosomal protein S12 [Ectocarpus siliculosus]) HSP 1 Score: 126.331 bits (316), Expect = 8.890e-34 Identity = 68/134 (50.75%), Postives = 94/134 (70.15%), Query Frame = 0 Query: 64 EEAAAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKS 197 EE +P VE + E++ AL+ VL+KAL+ DGL+RGLHE AKALDR SA+LC LA+D D+ EY LV ALC EG+V L+ ++TR++LG++ GL K+ EG K+ CS AVVTD+GE+++ L E + K Sbjct: 8 EETGSPEVEVK-EISVLDALKEVLKKALIFDGLRRGLHECAKALDRGSARLCCLAKDCDNPEYTQLVRALCDEGNVHLIMVDTRQELGQWAGLCKIGAEGEAT-KIVPCSCAVVTDYGEQTQALGVLLEHLKKG 139
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|1091667352|ref|XP_009380781.2| (PREDICTED: 40S ribosomal protein S12-like [Musa acuminata subsp. malaccensis]) HSP 1 Score: 128.642 bits (322), Expect = 8.895e-34 Identity = 73/163 (44.79%), Postives = 105/163 (64.42%), Query Frame = 0 Query: 34 PHAERSLRTPKIMAEDDPIMDVAEGGEEGGEEA--AAPAVEEELELNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFI 194 PH E +R P D ++ E E GEEA APA+ E ++L +AL+ V++K+L HDGL RGLHE+AKA+++H+A+LC+LA D + +Y LV ALC + +V L+ + + + LGE+ GL K+D EG R KV CS VV D+GEES H +QE++ Sbjct: 51 PHLETLIRRP-----SDHVLIEIELKEMAGEEAEKTAPALGEPMDLM--TALQLVMKKSLAHDGLVRGLHEAAKAIEKHAAQLCILAEDCNQADYVKLVKALCADHNVHLVTVPSAKTLGEWAGLCKIDSEGKAR-KVVGCSCVVVKDYGEESEGLHIVQEYV 205
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|549056235|emb|CCX05047.1| (Similar to 40S ribosomal protein S12; acc. no. O59936 [Pyronema omphalodes CBS 100304]) HSP 1 Score: 126.716 bits (317), Expect = 9.017e-34 Identity = 69/142 (48.59%), Postives = 92/142 (64.79%), Query Frame = 0 Query: 61 EGGEEAAAPAVEEELE---------LNEESALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEF 193 + GEE V EE+E ++ E AL+GVLR ALVHDGL RGL E++KALDR A +CVL + D + YK LV ALC E ++PL+ + +KLGE+ GL +D+EGN R KV CS VV D+GEES+E + L ++ Sbjct: 3 DAGEEVPQVEVSEEIEVAADAPKGQMSVEDALKGVLRHALVHDGLARGLREASKALDRRQAHMCVLNENCDEEAYKKLVEALCAEHNIPLIKVADGKKLGEWAGLCVLDREGNAR-KVVNCSCCVVKDWGEESQERNVLLQY 143
BLAST of EWM21153.1 vs. NCBI_GenBank
Match: gi|770402131|gb|KJK87201.1| (hypothetical protein H633G_08958 [Metarhizium anisopliae BRIP 53284]) HSP 1 Score: 127.487 bits (319), Expect = 1.234e-33 Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 0 Query: 64 EEAAAPAVEEELELNEES---------ALRGVLRKALVHDGLQRGLHESAKALDRHSAKLCVLARDVDSDEYKTLVTALCKEGSVPLLYIETREKLGEYVGLAKMDKEGNLRGKVQKCSVAVVTDFGEESREYHKLQEFIAKSQ 198 EE AP V EE+E++ ++ AL+GVL+ AL+HDGL RGL E++KALDR A +CVL + + D YK LV ALC E +PL+ ++ ++LGE+ GL +D+EGN R KV CS VV D+GEES+E L + SQ Sbjct: 36 EENNAPEVSEEVEVSADAPKGQMSVLDALKGVLKLALMHDGLARGLREASKALDRRQAHMCVLNENCEEDAYKKLVAALCDEHKIPLIKVQDGKQLGEWAGLCVLDREGNAR-KVVNCSCVVVKDWGEESQERSILLNYFQTSQ 178 The following BLAST results are available for this feature:
BLAST of EWM21153.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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