rna9536, rna9536 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9536
Unique Name	rna9536
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2003
Alignment location	KK037254.1:114053..115800 +

Link to JBrowse

Properties


Property Name	Value
Product	40s ribosomal protein s0
Orig transcript id	gnl\|cribi\|Naga_100108g3.7754.mrna
Orig protein id	gnl\|cribi\|Naga_100108g3.7754
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:114053..115800 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100108g3	gene9258	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9536	rna9536-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21169.1	cds9505	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:114053..115800+
coding sequence from alignment at KK037254.1:114053..115800+

mRNA sequence

>rna9536 ID=rna9536|Name=rna9536|organism=Nannochloropsis gaditana|type=mRNA|length=2003bp
ATGCGTGAAGGAGGATGGGTTGTGGACGGTTGTAATTTATCTCACCCGTC
CCGTTTTCTTCCTTTGCTCCCGTTTGTCCACCCGCAGGCTCGAGGTCTTC
GAGTTGGCAACCTCCTCCCCTTCACAGCCCCGTCTATATCCCAGCAATTT
CCTGATAGCACTCTCCTGCTCCGACTGAGGACGTCGACTGCCGTGATGGA
TCAACTACATCAGTTCCACCATCCTCGAAGAATACAAGTCCTTTTTCCCC
TTGTCATTCTCCTCCTCTCCTTCCTCTCAAGTGGCACCCAAGGTTTCCTC
CTCTTTCCGTCCTCCATCCTCTCCTCAGCACCTTCTCGCAACATTCGCCT
CCCTCAAAGAGCTTCTCCATGTTCCTCCCGTAATCTGCCTTCCACTTCAT
CTCGACTCCTCCCCTTTTACCCAGCGTCACTGTCCTCTTCCCTCTCCTTC
GACCCTAGCCGCTTCGTCCGCCCACAGACCCAGAGTCTGGCTGCGTCTTC
CTCCTCCCCCGAAGAGGAAGGCAATAACGAAAACACGGCAGAAGAAAGCG
CGGCGATTTGGGGATTAACGGACCTGGGCAACAGCAATTTTGGAAAGTTT
GGCTCCGAGCAAGACCCGCACCGGAATATCCGTCCCCAATTTTTGGATGG
GAGAGGGGCTCCTTGGAAGGAAGGCGCAGATTTCTTGCCAGAGCTCATGG
AAATCAAAATGCGCATTCAAGGTGTCAATGTCTATCTGGTGGGCATGCCT
GGCTCGGGCAAGACGACGTTGGGCCGCATGCTGGCCGAGGGGCTGCAATA
CCGGTGGATGGACTTGGACCAATTCATTGAGCAAAAGTTGGGGAAAGCCG
CGACGAAGGTCTTCGAGGAGGACGGGGAGGAGGTATGGCGCAAGCAGGAG
ACGTTGGGCATGGGCGCCTTACAGACGTACGTCCAGACAGTGGTGAGCAC
CGGGGGAGGGATCATGCAGCGGAAGGAGAACCTGCCCTTTTTGCACAGCG
GCCTCATCGTCTGGCTCGATCTGCCGCCCGAGGGGATCGTGGCGCGCATG
CAGTCCTCGGGAGAGATCGAGAAGCGGCCGTTGCTGAAGGCGGCCTCGGA
CCCGGTCCAGGCCGTCCGTTCCTTGTACGAAGAGCGGAAAGGCAACTATG
CCCTGGCGGACGTCCGGGTCGTCCTGCGGGGGGAGGACGACGCGGTCAAA
TGCTTGAAGCGGGTGGCACACCGGATCATTGAGGAGTTGGATCTGCGGCC
TCCAAAAGCAAAGATGTGGGAGGAGAAGCGGAACAAGATGAAGAATTTGT
GGGAGACCATGAAAGCCAAGGGGAGCATGACGGATATCAACGAGGTGCCG
GCGGAGGAGGGGGGGGAGAACCCGACCATCGGGGCGATCAAGGCGTTAAA
CCGAGATAGTAAGGGCAAGGGGGAGGGGAAGAAAGATTGGGGAGGGAAGG
CGGACAAGAGAGGCCAGAAGAAGAAAGGTTTCGGGGGCGCCGTGCGGAAA
GGAGGGGAGGGGAGCTCCCAGGAGGGGAGACAGGAGTCGGCGCCGGAGAC
GGCGGCGGTGGGCTCTCAGGGGGTAGGTTTCGGACTCGGGCTGGAGGAAT
ATATGAAAGGCGAGGAGGGCAAGAGGAAAGAGGGAGAGGATGGGGAGGTG
GCGGAGGCGGCCTAGGCGTGGGGATCGGGAGAAATGAGGAGGGGTCGAGG
TGAGAGAGGACCTTTGGGGGGGAGGAGCGACGGAGACAGGAAGGCGCAGA
TGCCTGTCAGGCTGATTGTGAGGAGACGGGTGACTGAAGAGAAAATGTAG
GGGGTGGGAAAGGGCAAGGAGGAAACATTGCCTGATCGTTATGGTGCACA
AAGGGACGCATAGGCAGGAAGCGGAAAGAAAAGGTGGGAGATTTATGGCT
TGTTGAGACGGATCCGCGGGAGGCGCGACTTGCCCGGTTGAACTAGGGCA
CCTGTCTATTCTTTTAAACAAGCATAATTCACAATGTGTACGCCGCAGCA
TCC

protein sequence of rna9536

>rna9536-protein ID=rna9536-protein|Name=rna9536|organism=Nannochloropsis gaditana|type=polypeptide|length=287bp
MTQIDVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYV
LNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQS
IAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFA
DSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVP
VDLFFYREPDEIEKDEEKPATFAAEAEIAEPAPIAPGIEDFGAGGMAGVV
PAYGEPVSASWDGAGAAPVDPAGASWDQPADTAGWTN

mRNA from alignment at KK037254.1:114053..115800+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9536 ID=rna9536|Name=rna9536|organism=Nannochloropsis gaditana|type=mRNA|length=1748bp|location=Sequence derived from alignment at KK037254.1:114053..115800+ (Nannochloropsis gaditana)
TCGCAGGAGTATCTGTCGAGCCTACCATTATGACTCAAATCGACGTACCC
AAGGCGCTGCAGCCGACGTAAGTGGTGGTAAAATTGACACTCTCCTTGTC
TGTCCAGcagcctcctctccgcctccctcactaGCCGTGTAACAAGCAGA
CCCAACCCGGGTGCTTTTGACGCACGGAAAGGCGATCACAGTGTCACACG
TTATTTCATAGTGCCTTCTTACTTCCCGATTTTGTGCCACCTCCACGGGG
CTCACCACGCTAACTCTGATCtccaatccctcctcccccccgtccgctct
tctttcccccctcctcagcgACCAAGACATCCACAAGCTTGTGTTCGCGT
CCGTGCACATCGGGACCAAGAACTCGGACAAGCTCATGGAGCCTTACATC
TGGCGCCGTCGCAGCGACAACACGTACGTCCTGAACTTGGGCAAGACATG
GGAGAAGCTCATTTTGGCTGCCAGGGTCATCGTAGCCGTCGAGAACCCGA
AGGACGTCATCGCCatctccgcccgcccttacGGCCAACGAGCCGTCCTG
AAATTTGCCCAGTACACAGGCGCTCAATCGATTGCCGGTCGTTTCACCCC
CGGTACCTTCACGAATCAGATCACCAAGCAATTCCGGGAGCCTCGCCTGC
TGCTGGTCACAGATCCTCGCACGGACTCCCAGGCTGTGCATGAGGCATCC
TACGTGAACGTGCCTGTCATTGCATTCGCCGACTCGGACTCGCCTTTGCA
ATTTGTGGACATCGCCATCCCCGCCAACAACAAGGGACGGCTCTCCATCG
GTTTGCTGTACTGGCTCCTGGCGCGGGAGGTCCTGCGGCTCCGCGGGACC
ATCAGCCGCGTGGACGAGTGGGACGTGCCTGTCGATCTCTTCTTCTACCG
CGAGCCCGACGAgatcgagaaggacgaggagaagccgGCCACCTTCGCCG
CGGAGGCGGAAATTGCGGAACCTGCACCCATCGCCCCTGGAATCGAGGAC
tttggggcgggaggcatgGCCGGCGTGGTCCCTGCGTACGGGGAGCCGGT
CTCGGCATCTTGGGATGGAGCGGGGGCGGCGCCTGTGGACCCGGCGGGCG
CGTCGTGGGACCAGCCTGCGGACACGGCGGGATGGACAAACTAgactggg
ggaggagaagggaaggagggaagcacagTGGTTTCAGCGGTGCGCGAGAG
CTTtctgcgggggagggagggtgagggtgaGGGTGAGGGTGGGGTGATTT
CGATGGTCGAGGGGTCAGCAGAGAAGGAGCCGtccggtgggaggagagga
atggcgggcgggggcgtggagagagTTCTTCCTCAGCGGACGCGTCGACA
TCGACGGAGAGACCCCATTAAGAAACCCTGGCAGTTACTATCATGTCTGC
AGTTGTTCGATTCCCCTCTACTGCCTTCGATTGTCGTTATCCCTGCGTGG
GCAgttatttttttttaaagatCTCGCATCTTTTCGTACTTTCCCAACGT
GCTACCATCCTGGTGTTGACCATGGCTAGGAAGGGGCTTCGCGCTTCGAG
GCGACAAAGATAGTCAAGGAAGACAGACCGCGTTGTCGAAGACTTTCCTC
GTTCCCAGCTCGCGCATCTGTTATGGTGCCGCCAGACCATAAGGTGGGTA
AGAAATTTCTTCCTAATGCCGACGCCCTTTCAAGTGGAGACAAGCACGCC
TGTAAGGCCGAACAAAACGAGCACCGACGTCCCGGTCGTGGTCTATAT

Coding sequence (CDS) from alignment at KK037254.1:114053..115800+

>rna9536 ID=rna9536|Name=rna9536|organism=Nannochloropsis gaditana|type=CDS|length=1728bp|location=Sequence derived from alignment at KK037254.1:114053..115800+ (Nannochloropsis gaditana)
ATGACTCAAATCGACGTACCCAAGGCGCTGCAGCCGACcgACCAAGACAT
CCACAAGCTTGTGTTCGCGTCCGTGCACATCGGGACCAAGAACTCGGACA
AGCTCATGGAGCCTTACATCTGGCGCCGTCGCAGCGACAACACGTACGTC
CTGAACTTGGGCAAGACATGGGAGAAGCTCATTTTGGCTGCCAGGGTCAT
CGTAGCCGTCGAGAACCCGAAGGACGTCATCGCCatctccgcccgccctt
acGGCCAACGAGCCGTCCTGAAATTTGCCCAGTACACAGGCGCTCAATCG
ATTGCCGGTCGTTTCACCCCCGGTACCTTCACGAATCAGATCACCAAGCA
ATTCCGGGAGCCTCGCCTGCTGCTGGTCACAGATCCTCGCACGGACTCCC
AGGCTGTGCATGAGGCATCCTACGTGAACGTGCCTGTCATTGCATTCGCC
GACTCGGACTCGCCTTTGCAATTTGTGGACATCGCCATCCCCGCCAACAA
CAAGGGACGGCTCTCCATCGGTTTGCTGTACTGGCTCCTGGCGCGGGAGG
TCCTGCGGCTCCGCGGGACCATCAGCCGCGTGGACGAGTGGGACGTGCCT
GTCGATCTCTTCTTCTACCGCGAGCCCGACGAgatcgagaaggacgagga
gaagccgGCCACCTTCGCCGCGGAGGCGGAAATTGCGGAACCTGCACCCA
TCGCCCCTGGAATCGAGGACtttggggcgggaggcatgGCCGGCGTGGTC
CCTGCGTACGGGGAGCCGGTCTCGGCATCTTGGGATGGAGCGGGGGCGGC
GCCTGTGGACCCGGCGGGCGCGTCGTGGGACCAGCCTGCGGACACGGCGG
GATGGACAAACTAgATGACTCAAATCGACGTACCCAAGGCGCTGCAGCCG
ACcgACCAAGACATCCACAAGCTTGTGTTCGCGTCCGTGCACATCGGGAC
CAAGAACTCGGACAAGCTCATGGAGCCTTACATCTGGCGCCGTCGCAGCG
ACAACACGTACGTCCTGAACTTGGGCAAGACATGGGAGAAGCTCATTTTG
GCTGCCAGGGTCATCGTAGCCGTCGAGAACCCGAAGGACGTCATCGCCat
ctccgcccgcccttacGGCCAACGAGCCGTCCTGAAATTTGCCCAGTACA
CAGGCGCTCAATCGATTGCCGGTCGTTTCACCCCCGGTACCTTCACGAAT
CAGATCACCAAGCAATTCCGGGAGCCTCGCCTGCTGCTGGTCACAGATCC
TCGCACGGACTCCCAGGCTGTGCATGAGGCATCCTACGTGAACGTGCCTG
TCATTGCATTCGCCGACTCGGACTCGCCTTTGCAATTTGTGGACATCGCC
ATCCCCGCCAACAACAAGGGACGGCTCTCCATCGGTTTGCTGTACTGGCT
CCTGGCGCGGGAGGTCCTGCGGCTCCGCGGGACCATCAGCCGCGTGGACG
AGTGGGACGTGCCTGTCGATCTCTTCTTCTACCGCGAGCCCGACGAgatc
gagaaggacgaggagaagccgGCCACCTTCGCCGCGGAGGCGGAAATTGC
GGAACCTGCACCCATCGCCCCTGGAATCGAGGACtttggggcgggaggca
tgGCCGGCGTGGTCCCTGCGTACGGGGAGCCGGTCTCGGCATCTTGGGAT
GGAGCGGGGGCGGCGCCTGTGGACCCGGCGGGCGCGTCGTGGGACCAGCC
TGCGGACACGGCGGGATGGACAAACTAg

Synonyms

Publications