EWM21169.1, cds9505 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|585101239|gb|EWM21169.1| (40s ribosomal protein s0 [Nannochloropsis gaditana]) HSP 1 Score: 582.793 bits (1501), Expect = 0.000e+0 Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
Query: 1 MTQIDVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEIAEPAPIAPGIEDFGAGGMAGVVPAYGEPVSASWDGAGAAPVDPAGASWDQPADTAGWTN 287
MTQIDVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEIAEPAPIAPGIEDFGAGGMAGVVPAYGEPVSASWDGAGAAPVDPAGASWDQPADTAGWTN
Sbjct: 1 MTQIDVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEIAEPAPIAPGIEDFGAGGMAGVVPAYGEPVSASWDGAGAAPVDPAGASWDQPADTAGWTN 287
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|1072230922|gb|OEU15655.1| (ribosomal protein S2 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 357.451 bits (916), Expect = 3.723e-121 Identity = 168/243 (69.14%), Postives = 204/243 (83.95%), Query Frame = 0
Query: 1 MTQIDVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEIAEPAPIAPGIEDFGA 243
M +P LQP ++DI ++ A VH GT+NSD ME YIWRRR+D ++LN+GKTWEKLILAARVIVA+ENP+DVIAISARPYG RAVLKFAQYTGAQ++AGRFTPGTFTNQITKQFREPRLL++TDPRTDSQ+V E+SYVN+PVIAF DSDSPLQFVDIAIPANNKG+ SIGL+YWLL+RE+LRLRG++SR +WDVPVDLFF+R+ +E++K EE+ A +AE + A + P +D A
Sbjct: 1 MNFASLPAVLQPKEEDIQMMLSAGVHTGTRNSDSAMEEYIWRRRNDGVHILNIGKTWEKLILAARVIVAIENPEDVIAISARPYGMRAVLKFAQYTGAQALAGRFTPGTFTNQITKQFREPRLLVITDPRTDSQSVRESSYVNLPVIAFCDSDSPLQFVDIAIPANNKGKYSIGLMYWLLSREILRLRGSVSRTSDWDVPVDLFFHRDVEELKKSEEEQAQ---KAEDSAAAAVVPTYDDVMA 240
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|223997552|ref|XP_002288449.1| (40S ribosomal protein-like protein [Thalassiosira pseudonana CCMP1335] >gi|220975557|gb|EED93885.1| 40S ribosomal protein-like protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 353.599 bits (906), Expect = 2.510e-120 Identity = 163/221 (73.76%), Postives = 193/221 (87.33%), Query Frame = 0
Query: 6 VPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEA 226
+P+ L P ++DI ++ A VH GT+NSD ME YIWRRR D ++LN+GKTWEK++LAARVIVA+ENP+DV+AISARP+G RAVLKFA YTGAQSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQAV E+SYVN+PVIAF DSDSPLQFVDIAIPANNKG+ SIGL+YWLLAREVLRLRG++SR +WDVPVDLFF+R+ +E++K EE+ A EA
Sbjct: 7 LPQVLHPKEEDIQMMLSAGVHTGTRNSDSSMEEYIWRRRKDGLHILNIGKTWEKIMLAARVIVAIENPEDVVAISARPWGMRAVLKFAHYTGAQSIAGRFTPGTFTNQITKQFREPRLLIVTDPRTDSQAVRESSYVNIPVIAFCDSDSPLQFVDIAIPANNKGKHSIGLIYWLLAREVLRLRGSVSRTSDWDVPVDLFFHRDIEELKKTEEEAAAKVDEA 227
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|676387807|ref|XP_009037182.1| (hypothetical protein AURANDRAFT_4875, partial [Aureococcus anophagefferens] >gi|323451948|gb|EGB07823.1| hypothetical protein AURANDRAFT_4875, partial [Aureococcus anophagefferens]) HSP 1 Score: 351.673 bits (901), Expect = 5.395e-120 Identity = 162/218 (74.31%), Postives = 193/218 (88.53%), Query Frame = 0
Query: 10 LQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAE 227
L P ++DI K++ A HIGT+NSD +ME YIWRRR D +++N+GKTWEKL+LAARV+ A+ENP+D+IAISARPYGQRAVLKFAQYTGA SIAGRFTPGTFTNQITKQF+EPR+L++TDPRTDSQAV EASYVN+PVIAF DSDSP Q VD+AIP+NNKG+LSIGLLYWLLARE+LR+RGT++R WDVPVDLFFYR+P+E+EK +E A FAAE E
Sbjct: 2 LAPKEEDIQKMLSAQCHIGTRNSDHMMEEYIWRRRQDGIHIINVGKTWEKLMLAARVLTAIENPQDIIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFKEPRILVITDPRTDSQAVKEASYVNLPVIAFCDSDSPCQHVDVAIPSNNKGKLSIGLLYWLLAREMLRMRGTVARHAPWDVPVDLFFYRDPEELEKADEAQA-FAAEQE 218
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|1210529154|dbj|GAX12300.1| (small subunit ribosomal protein SAe [Fistulifera solaris]) HSP 1 Score: 353.599 bits (906), Expect = 7.435e-120 Identity = 177/278 (63.67%), Postives = 217/278 (78.06%), Query Frame = 0
Query: 5 DVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATF-----------AAEAEIAEPAPI--APGIEDFGAGGMAGVVPAYGEPVSASWDG--AGAA 267
++P LQP ++DI ++ A VH GT+NSD +M YIWRRR D ++LN+G+TWEKL+LAARVIV++ENP DVIAISARPYG RA LKFA YTGAQSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQAV EASYVN+PVIAF DSDSPLQ+VDIAIPANNKG+LSIGLLYWLLAREVLRLRG+ISR + W+VPVDLFF+R+ +E++K+EE+ AA AE+ +P+ + G++ + A AYG +++W+G AG A
Sbjct: 6 NLPAVLQPKEEDIQMMLSAGVHTGTRNSDSMMTEYIWRRRVDGVHILNIGQTWEKLMLAARVIVSIENPADVIAISARPYGMRATLKFANYTGAQSIAGRFTPGTFTNQITKQFREPRLLIVTDPRTDSQAVKEASYVNIPVIAFCDSDSPLQYVDIAIPANNKGKLSIGLLYWLLAREVLRLRGSISRAEPWEVPVDLFFHRDVEELKKNEEEQQAKLDEAGGTGGYEAAPAEVMDPSQLVDTAGVDGYQA-------DAYG---ASTWEGDQAGGA 273
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|219121660|ref|XP_002181180.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407166|gb|EEC47103.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 349.747 bits (896), Expect = 2.794e-119 Identity = 161/215 (74.88%), Postives = 196/215 (91.16%), Query Frame = 0
Query: 6 VPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPA 220
+P+ LQP ++DI ++ A VH GT+NSD M+ YIWRRR+D ++LN+GKTWEKL+LAARVIVA+ENP+DVIAISARPYG RAVLKFA YTGAQ++AGR+TPGTFTNQITKQF+EPRLL++TDPRTDSQAV EASYVN+PVIAF DSDSPLQ+VD+AIPANNKG+ SIGLLYWLLAREVLRLRG+ISR +EW+VPVDLFF+R+P+E++K+EE+ A
Sbjct: 7 LPEILQPKEEDIQMMLSAGVHTGTRNSDSNMQEYIWRRRNDGVHILNIGKTWEKLVLAARVIVAIENPEDVIAISARPYGMRAVLKFANYTGAQAVAGRWTPGTFTNQITKQFKEPRLLIITDPRTDSQAVKEASYVNIPVIAFCDSDSPLQYVDVAIPANNKGKYSIGLLYWLLAREVLRLRGSISR-NEWEVPVDLFFHRDPEELKKNEEEQA 220
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|1210520211|dbj|GAX21094.1| (small subunit ribosomal protein SAe [Fistulifera solaris]) HSP 1 Score: 350.517 bits (898), Expect = 1.004e-118 Identity = 176/278 (63.31%), Postives = 216/278 (77.70%), Query Frame = 0
Query: 5 DVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATF-----------AAEAEIAEPAPI--APGIEDFGAGGMAGVVPAYGEPVSASWDG--AGAA 267
++P LQP ++DI ++ A VH GT+NSD +M YIWRRR D ++LN+G+TWEKL+LAARVIV++ENP DVIAISARPYG RA LKFA YTGAQSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQAV EASYVN+PVIA DSDSPLQ+VDIAIPANNKG+LSIGLLYWLLAREVLRLRG+ISR + W+VPVDLFF+R+ +E++K+EE+ AA AE+ +P+ + G++ + A AYG +++W+G AG A
Sbjct: 6 NLPAILQPKEEDIQMMLSAGVHTGTRNSDSMMTEYIWRRRVDGVHILNIGQTWEKLMLAARVIVSIENPADVIAISARPYGMRATLKFANYTGAQSIAGRFTPGTFTNQITKQFREPRLLIVTDPRTDSQAVKEASYVNIPVIALCDSDSPLQYVDIAIPANNKGKLSIGLLYWLLAREVLRLRGSISRAEPWEVPVDLFFHRDVEELKKNEEEQQAKLDEAGGTGGYEAAPAEVMDPSQLVDTAGVDGYQA-------DAYG---ASTWEGDQAGGA 273
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|397573199|gb|EJK48596.1| (hypothetical protein THAOC_32592 [Thalassiosira oceanica]) HSP 1 Score: 350.517 bits (898), Expect = 1.727e-118 Identity = 165/228 (72.37%), Postives = 197/228 (86.40%), Query Frame = 0
Query: 6 VPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEIAEPAP 233
+P LQP ++DI ++ A VH GT+NSD ME YIWRRR D +VLN+GKTWEK++LAARVIVA+ENP+DV+AISARP+G RAVLKFA YTG+QSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQAV E+SYVN+PVIAF DSDSPLQ VDIAIPANNKG+ SIGL+YW+LAREVLRLRG++SR +WDVPVDLFF+R+ +E++K EE+ A +AE +PAP
Sbjct: 8 LPAVLQPKEEDIQMMLSAGVHTGTRNSDSAMEEYIWRRRKDGLHVLNIGKTWEKIMLAARVIVAIENPEDVVAISARPWGMRAVLKFAHYTGSQSIAGRFTPGTFTNQITKQFREPRLLIVTDPRTDSQAVRESSYVNIPVIAFCDSDSPLQHVDIAIPANNKGKHSIGLMYWMLAREVLRLRGSVSRSVDWDVPVDLFFHRDIEELKKTEEEQAAAKLQAE-QQPAP 234
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|953487603|emb|CEG48431.1| (ribosomal protein s2 [Plasmopara halstedii]) HSP 1 Score: 342.428 bits (877), Expect = 1.988e-115 Identity = 164/231 (71.00%), Postives = 193/231 (83.55%), Query Frame = 0
Query: 14 DQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEI------AEPAPIAPGI 238
++DI ++ A VHIGT+N+D M YIWRRR+D +V+N+GKTWEKL+LAARVIVAVENP+DVIAISARPYGQRAVLKFAQ+TG +IA RFTPGTFTNQITKQFREPRLL++TDPRTDSQAV E+S+VNVPVIA DSDSPLQFVD+AIPANNKG+LSIGLLYWLLAREVLRLRGTISR WDV VDLF YR+P+E++K EE A E++ A P+P+ P +
Sbjct: 9 EEDIKMMLAAQVHIGTRNADSKMADYIWRRRNDGIHVINVGKTWEKLMLAARVIVAVENPEDVIAISARPYGQRAVLKFAQHTGCNAIASRFTPGTFTNQITKQFREPRLLIITDPRTDSQAVRESSFVNVPVIALCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQAIAGDESQARPGWGDASPSPVEPAL 239
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|1173954105|gb|OQS01598.1| (40S ribosomal protein SA [Achlya hypogyna]) HSP 1 Score: 340.502 bits (872), Expect = 9.211e-115 Identity = 160/217 (73.73%), Postives = 189/217 (87.10%), Query Frame = 0
Query: 10 LQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEA 226
L ++DI K++ A VHIGT+N+D M YIWRRR+D +++N+GKTWEKL+LAA++IVAVENP DVIAISARPYGQRAVLKFAQYTG Q+IAGRFTPGTFTNQITKQFREPRLL++TDPRTD+Q V E++YVNVPVIAF DSDSPL++VD+AIPANNKG+LSIGLLYWLL+REVLRLRGTISR WDV VDLFFYR+P+E+EK EE A E+
Sbjct: 2 LTQREEDIQKMLAAMVHIGTRNADAQMGDYIWRRRNDGIHIINVGKTWEKLMLAAKIIVAVENPADVIAISARPYGQRAVLKFAQYTGCQAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQPVRESAYVNVPVIAFCDSDSPLRYVDVAIPANNKGKLSIGLLYWLLSREVLRLRGTISRALPWDVAVDLFFYRDPEELEKAEEAQTGAADES 218 The following BLAST results are available for this feature:
BLAST of EWM21169.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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