EWM21169.1, cds9505 (CDS) Nannochloropsis gaditana

Overview
NameEWM21169.1
Unique Namecds9505
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:114082..114119 +
Alignment locationKK037254.1:114371..115196 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21169.1
Product40s ribosomal protein s0
Orig transcript idgnl|cribi|Naga_100108g3.7754.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:114082..114119 +
KK037254.1supercontigKK037254.1:114371..115196 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0015935small ribosomal subunit
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR023591Ribosomal_S2_flav_dom
IPR027498Ribosomal_S2_euk
IPR018130Ribosomal_S2_CS
IPR005707Ribosomal_S2_euk/arc
IPR001865Ribosomal_S2
Homology
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|585101239|gb|EWM21169.1| (40s ribosomal protein s0 [Nannochloropsis gaditana])

HSP 1 Score: 582.793 bits (1501), Expect = 0.000e+0
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
Query:    1 MTQIDVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEIAEPAPIAPGIEDFGAGGMAGVVPAYGEPVSASWDGAGAAPVDPAGASWDQPADTAGWTN 287
            MTQIDVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEIAEPAPIAPGIEDFGAGGMAGVVPAYGEPVSASWDGAGAAPVDPAGASWDQPADTAGWTN
Sbjct:    1 MTQIDVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEIAEPAPIAPGIEDFGAGGMAGVVPAYGEPVSASWDGAGAAPVDPAGASWDQPADTAGWTN 287          
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|1072230922|gb|OEU15655.1| (ribosomal protein S2 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 357.451 bits (916), Expect = 3.723e-121
Identity = 168/243 (69.14%), Postives = 204/243 (83.95%), Query Frame = 0
Query:    1 MTQIDVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEIAEPAPIAPGIEDFGA 243
            M    +P  LQP ++DI  ++ A VH GT+NSD  ME YIWRRR+D  ++LN+GKTWEKLILAARVIVA+ENP+DVIAISARPYG RAVLKFAQYTGAQ++AGRFTPGTFTNQITKQFREPRLL++TDPRTDSQ+V E+SYVN+PVIAF DSDSPLQFVDIAIPANNKG+ SIGL+YWLL+RE+LRLRG++SR  +WDVPVDLFF+R+ +E++K EE+ A    +AE +  A + P  +D  A
Sbjct:    1 MNFASLPAVLQPKEEDIQMMLSAGVHTGTRNSDSAMEEYIWRRRNDGVHILNIGKTWEKLILAARVIVAIENPEDVIAISARPYGMRAVLKFAQYTGAQALAGRFTPGTFTNQITKQFREPRLLVITDPRTDSQSVRESSYVNLPVIAFCDSDSPLQFVDIAIPANNKGKYSIGLMYWLLSREILRLRGSVSRTSDWDVPVDLFFHRDVEELKKSEEEQAQ---KAEDSAAAAVVPTYDDVMA 240          
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|223997552|ref|XP_002288449.1| (40S ribosomal protein-like protein [Thalassiosira pseudonana CCMP1335] >gi|220975557|gb|EED93885.1| 40S ribosomal protein-like protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 353.599 bits (906), Expect = 2.510e-120
Identity = 163/221 (73.76%), Postives = 193/221 (87.33%), Query Frame = 0
Query:    6 VPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEA 226
            +P+ L P ++DI  ++ A VH GT+NSD  ME YIWRRR D  ++LN+GKTWEK++LAARVIVA+ENP+DV+AISARP+G RAVLKFA YTGAQSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQAV E+SYVN+PVIAF DSDSPLQFVDIAIPANNKG+ SIGL+YWLLAREVLRLRG++SR  +WDVPVDLFF+R+ +E++K EE+ A    EA
Sbjct:    7 LPQVLHPKEEDIQMMLSAGVHTGTRNSDSSMEEYIWRRRKDGLHILNIGKTWEKIMLAARVIVAIENPEDVVAISARPWGMRAVLKFAHYTGAQSIAGRFTPGTFTNQITKQFREPRLLIVTDPRTDSQAVRESSYVNIPVIAFCDSDSPLQFVDIAIPANNKGKHSIGLIYWLLAREVLRLRGSVSRTSDWDVPVDLFFHRDIEELKKTEEEAAAKVDEA 227          
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|676387807|ref|XP_009037182.1| (hypothetical protein AURANDRAFT_4875, partial [Aureococcus anophagefferens] >gi|323451948|gb|EGB07823.1| hypothetical protein AURANDRAFT_4875, partial [Aureococcus anophagefferens])

HSP 1 Score: 351.673 bits (901), Expect = 5.395e-120
Identity = 162/218 (74.31%), Postives = 193/218 (88.53%), Query Frame = 0
Query:   10 LQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAE 227
            L P ++DI K++ A  HIGT+NSD +ME YIWRRR D  +++N+GKTWEKL+LAARV+ A+ENP+D+IAISARPYGQRAVLKFAQYTGA SIAGRFTPGTFTNQITKQF+EPR+L++TDPRTDSQAV EASYVN+PVIAF DSDSP Q VD+AIP+NNKG+LSIGLLYWLLARE+LR+RGT++R   WDVPVDLFFYR+P+E+EK +E  A FAAE E
Sbjct:    2 LAPKEEDIQKMLSAQCHIGTRNSDHMMEEYIWRRRQDGIHIINVGKTWEKLMLAARVLTAIENPQDIIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFKEPRILVITDPRTDSQAVKEASYVNLPVIAFCDSDSPCQHVDVAIPSNNKGKLSIGLLYWLLAREMLRMRGTVARHAPWDVPVDLFFYRDPEELEKADEAQA-FAAEQE 218          
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|1210529154|dbj|GAX12300.1| (small subunit ribosomal protein SAe [Fistulifera solaris])

HSP 1 Score: 353.599 bits (906), Expect = 7.435e-120
Identity = 177/278 (63.67%), Postives = 217/278 (78.06%), Query Frame = 0
Query:    5 DVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATF-----------AAEAEIAEPAPI--APGIEDFGAGGMAGVVPAYGEPVSASWDG--AGAA 267
            ++P  LQP ++DI  ++ A VH GT+NSD +M  YIWRRR D  ++LN+G+TWEKL+LAARVIV++ENP DVIAISARPYG RA LKFA YTGAQSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQAV EASYVN+PVIAF DSDSPLQ+VDIAIPANNKG+LSIGLLYWLLAREVLRLRG+ISR + W+VPVDLFF+R+ +E++K+EE+               AA AE+ +P+ +    G++ + A        AYG   +++W+G  AG A
Sbjct:    6 NLPAVLQPKEEDIQMMLSAGVHTGTRNSDSMMTEYIWRRRVDGVHILNIGQTWEKLMLAARVIVSIENPADVIAISARPYGMRATLKFANYTGAQSIAGRFTPGTFTNQITKQFREPRLLIVTDPRTDSQAVKEASYVNIPVIAFCDSDSPLQYVDIAIPANNKGKLSIGLLYWLLAREVLRLRGSISRAEPWEVPVDLFFHRDVEELKKNEEEQQAKLDEAGGTGGYEAAPAEVMDPSQLVDTAGVDGYQA-------DAYG---ASTWEGDQAGGA 273          
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|219121660|ref|XP_002181180.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407166|gb|EEC47103.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 349.747 bits (896), Expect = 2.794e-119
Identity = 161/215 (74.88%), Postives = 196/215 (91.16%), Query Frame = 0
Query:    6 VPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPA 220
            +P+ LQP ++DI  ++ A VH GT+NSD  M+ YIWRRR+D  ++LN+GKTWEKL+LAARVIVA+ENP+DVIAISARPYG RAVLKFA YTGAQ++AGR+TPGTFTNQITKQF+EPRLL++TDPRTDSQAV EASYVN+PVIAF DSDSPLQ+VD+AIPANNKG+ SIGLLYWLLAREVLRLRG+ISR +EW+VPVDLFF+R+P+E++K+EE+ A
Sbjct:    7 LPEILQPKEEDIQMMLSAGVHTGTRNSDSNMQEYIWRRRNDGVHILNIGKTWEKLVLAARVIVAIENPEDVIAISARPYGMRAVLKFANYTGAQAVAGRWTPGTFTNQITKQFKEPRLLIITDPRTDSQAVKEASYVNIPVIAFCDSDSPLQYVDVAIPANNKGKYSIGLLYWLLAREVLRLRGSISR-NEWEVPVDLFFHRDPEELKKNEEEQA 220          
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|1210520211|dbj|GAX21094.1| (small subunit ribosomal protein SAe [Fistulifera solaris])

HSP 1 Score: 350.517 bits (898), Expect = 1.004e-118
Identity = 176/278 (63.31%), Postives = 216/278 (77.70%), Query Frame = 0
Query:    5 DVPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATF-----------AAEAEIAEPAPI--APGIEDFGAGGMAGVVPAYGEPVSASWDG--AGAA 267
            ++P  LQP ++DI  ++ A VH GT+NSD +M  YIWRRR D  ++LN+G+TWEKL+LAARVIV++ENP DVIAISARPYG RA LKFA YTGAQSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQAV EASYVN+PVIA  DSDSPLQ+VDIAIPANNKG+LSIGLLYWLLAREVLRLRG+ISR + W+VPVDLFF+R+ +E++K+EE+               AA AE+ +P+ +    G++ + A        AYG   +++W+G  AG A
Sbjct:    6 NLPAILQPKEEDIQMMLSAGVHTGTRNSDSMMTEYIWRRRVDGVHILNIGQTWEKLMLAARVIVSIENPADVIAISARPYGMRATLKFANYTGAQSIAGRFTPGTFTNQITKQFREPRLLIVTDPRTDSQAVKEASYVNIPVIALCDSDSPLQYVDIAIPANNKGKLSIGLLYWLLAREVLRLRGSISRAEPWEVPVDLFFHRDVEELKKNEEEQQAKLDEAGGTGGYEAAPAEVMDPSQLVDTAGVDGYQA-------DAYG---ASTWEGDQAGGA 273          
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|397573199|gb|EJK48596.1| (hypothetical protein THAOC_32592 [Thalassiosira oceanica])

HSP 1 Score: 350.517 bits (898), Expect = 1.727e-118
Identity = 165/228 (72.37%), Postives = 197/228 (86.40%), Query Frame = 0
Query:    6 VPKALQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEIAEPAP 233
            +P  LQP ++DI  ++ A VH GT+NSD  ME YIWRRR D  +VLN+GKTWEK++LAARVIVA+ENP+DV+AISARP+G RAVLKFA YTG+QSIAGRFTPGTFTNQITKQFREPRLL+VTDPRTDSQAV E+SYVN+PVIAF DSDSPLQ VDIAIPANNKG+ SIGL+YW+LAREVLRLRG++SR  +WDVPVDLFF+R+ +E++K EE+ A    +AE  +PAP
Sbjct:    8 LPAVLQPKEEDIQMMLSAGVHTGTRNSDSAMEEYIWRRRKDGLHVLNIGKTWEKIMLAARVIVAIENPEDVVAISARPWGMRAVLKFAHYTGSQSIAGRFTPGTFTNQITKQFREPRLLIVTDPRTDSQAVRESSYVNIPVIAFCDSDSPLQHVDIAIPANNKGKHSIGLMYWMLAREVLRLRGSVSRSVDWDVPVDLFFHRDIEELKKTEEEQAAAKLQAE-QQPAP 234          
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|953487603|emb|CEG48431.1| (ribosomal protein s2 [Plasmopara halstedii])

HSP 1 Score: 342.428 bits (877), Expect = 1.988e-115
Identity = 164/231 (71.00%), Postives = 193/231 (83.55%), Query Frame = 0
Query:   14 DQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEAEI------AEPAPIAPGI 238
            ++DI  ++ A VHIGT+N+D  M  YIWRRR+D  +V+N+GKTWEKL+LAARVIVAVENP+DVIAISARPYGQRAVLKFAQ+TG  +IA RFTPGTFTNQITKQFREPRLL++TDPRTDSQAV E+S+VNVPVIA  DSDSPLQFVD+AIPANNKG+LSIGLLYWLLAREVLRLRGTISR   WDV VDLF YR+P+E++K EE  A    E++       A P+P+ P +
Sbjct:    9 EEDIKMMLAAQVHIGTRNADSKMADYIWRRRNDGIHVINVGKTWEKLMLAARVIVAVENPEDVIAISARPYGQRAVLKFAQHTGCNAIASRFTPGTFTNQITKQFREPRLLIITDPRTDSQAVRESSFVNVPVIALCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQAIAGDESQARPGWGDASPSPVEPAL 239          
BLAST of EWM21169.1 vs. NCBI_GenBank
Match: gi|1173954105|gb|OQS01598.1| (40S ribosomal protein SA [Achlya hypogyna])

HSP 1 Score: 340.502 bits (872), Expect = 9.211e-115
Identity = 160/217 (73.73%), Postives = 189/217 (87.10%), Query Frame = 0
Query:   10 LQPTDQDIHKLVFASVHIGTKNSDKLMEPYIWRRRSDNTYVLNLGKTWEKLILAARVIVAVENPKDVIAISARPYGQRAVLKFAQYTGAQSIAGRFTPGTFTNQITKQFREPRLLLVTDPRTDSQAVHEASYVNVPVIAFADSDSPLQFVDIAIPANNKGRLSIGLLYWLLAREVLRLRGTISRVDEWDVPVDLFFYREPDEIEKDEEKPATFAAEA 226
            L   ++DI K++ A VHIGT+N+D  M  YIWRRR+D  +++N+GKTWEKL+LAA++IVAVENP DVIAISARPYGQRAVLKFAQYTG Q+IAGRFTPGTFTNQITKQFREPRLL++TDPRTD+Q V E++YVNVPVIAF DSDSPL++VD+AIPANNKG+LSIGLLYWLL+REVLRLRGTISR   WDV VDLFFYR+P+E+EK EE     A E+
Sbjct:    2 LTQREEDIQKMLAAMVHIGTRNADAQMGDYIWRRRNDGIHIINVGKTWEKLMLAAKIIVAVENPADVIAISARPYGQRAVLKFAQYTGCQAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQPVRESAYVNVPVIAFCDSDSPLRYVDVAIPANNKGKLSIGLLYWLLSREVLRLRGTISRALPWDVAVDLFFYRDPEELEKAEEAQTGAADES 218          
The following BLAST results are available for this feature:
BLAST of EWM21169.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101239|gb|EWM21169.1|0.000e+0100.0040s ribosomal protein s0 [Nannochloropsis gaditana... [more]
gi|1072230922|gb|OEU15655.1|3.723e-12169.14ribosomal protein S2 [Fragilariopsis cylindrus CCM... [more]
gi|223997552|ref|XP_002288449.1|2.510e-12073.7640S ribosomal protein-like protein [Thalassiosira ... [more]
gi|676387807|ref|XP_009037182.1|5.395e-12074.31hypothetical protein AURANDRAFT_4875, partial [Aur... [more]
gi|1210529154|dbj|GAX12300.1|7.435e-12063.67small subunit ribosomal protein SAe [Fistulifera s... [more]
gi|219121660|ref|XP_002181180.1|2.794e-11974.88predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1210520211|dbj|GAX21094.1|1.004e-11863.31small subunit ribosomal protein SAe [Fistulifera s... [more]
gi|397573199|gb|EJK48596.1|1.727e-11872.37hypothetical protein THAOC_32592 [Thalassiosira oc... [more]
gi|953487603|emb|CEG48431.1|1.988e-11571.00ribosomal protein s2 [Plasmopara halstedii][more]
gi|1173954105|gb|OQS01598.1|9.211e-11573.7340S ribosomal protein SA [Achlya hypogyna][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9536rna9536Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications