rna9535, rna9535 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9535
Unique Name	rna9535
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1542
Alignment location	KK037254.1:111663..113665 -

Link to JBrowse

Properties


Property Name	Value
Product	shikimate kinase
Orig transcript id	gnl\|cribi\|Naga_100108g2.7741.mrna
Orig protein id	gnl\|cribi\|Naga_100108g2.7741
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:111663..113665 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100108g2	gene9257	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21156.1	cds9504	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9535	rna9535-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:111663..113665-
coding sequence from alignment at KK037254.1:111663..113665-

mRNA sequence

>rna9535 ID=rna9535|Name=rna9535|organism=Nannochloropsis gaditana|type=mRNA|length=1542bp
GGAACGAGCGGAGGAGGAGGCGGAGGGGGAGGGGACGGCGGGGTGGGGGA
GGAGGAGGAGGACGAAGAGGACGAGGAGCGGCGGAAGCTGGGGGCATCCA
AGCGGGTGGGGGCGAGCGCGCAAGTGGATGTGGGCTTGACCAAGACGGGC
GAGCGTCTCACGGATTTCACCTCCGCCAAGGCAGAATACCTGGGGGGCCC
TCCCCTCCCCGCGGTCTGGGCGGGCGGCCACCAGATTTTCATCATGGGGG
GGGCGCCTTTCGGAGTCACGTCCGTGATCCCTCTGGAGCCCTTTGAGCGG
GGCTTGGCCCTGATGGTCTACCACCGACGGTCCCCGTCCACCCCCGCCTT
TCCCCCGGGGCCGCCCTCCCACCAATCCCATTTTCGAGAACGCTACCCGA
ATCGGGCCCCGCCCCCCGCCGACCTCCCTCCCTTCCAGGCCGCCGATACC
TACCTGGCCGTCGGCACGTGCACTGTCCGGGCCAAAGGCGAGGACGTGCC
CAGCAAGGGGCGGCTGCTCATGTACCGGATCTCGCTCGATCCGTACGCGG
GCCTGACGTCTCCCCCCACCCTCACCCTGGTCGACCAGTATTCCCAACGT
TCGGGTCCCCCCACGGCCATTGCCCAGCTGGGTCCGCACATCATCATCGC
TGCGGGCCCGACCCTCTGGGTGTATGCCTTCTCGGCCCGGGAGAAACTCA
AGCCGATCGCCTTTTACGACGCAGATTTTTACGTGGTCTCCTTGCGGGTC
GTGAAGACGCTGGTGGCGGTCACGGACGCCTACCATTCCGTCCACCTCCT
TCGCTGGCACGAGCACGATCCGGCCCACACGCTGGAACTGATGGGAAAGG
ACTATTCACCCATCGTCTCCGCGCAACCGGGAGGCTCGCACTTTGTCGTC
GATCCACCCTCCCTGGGCATGCTCGTCGGGGATTCCCGGGGCAATCTGCA
ACTGTTACAGTACGATCCTGCCGACGTGGAGTCCCGAGGAGGAAACCGGT
TGGTACGACGGGCGGACTTCCACCTCTCCCACCGCCTGTCCTTCCTCCAA
CATACACGGATGGCCGAGGTACCTCGCCCCGGTGCTTATCGAGCCGGAGT
CCGAGTCATGGTGTTCGGGAGCGTGGAGGGAGGAGTCGGGGCGCTGGTGC
CGGTGGAGGAAAAAGTCTACCGGCGCTTGTACGCCCTCCAGGCCGTGATG
GTCAATGCTTTGCCGCACGTGGGGGCCTTCAATCCCCGAGGTTTCCGGCT
GGTGGAGGCGCGTGGATGGGCGCAAGGCCGGAAAAAAGGGACGCTGGACG
GGGAGTTGCTGTGGCGGTTCGCAGGCTTAAGTGTGGGGAAACAGGAGGAC
TTGGCGAGTGCGATAGGGACAAGCAGGGAGATGGTTCTGGAGTCTTTGTT
GGAGGTGGATATGATGACGTGGACGCTGTAATATAGGAAAGATTTGTGGA
GGGCGACTACGAATATAGGGACAAGGGTAAATGCCTTTCGGTTGAAGAAC
ATGTCTCAAACAAAGCAATAAGAAATGTTTAAGCAATTTTGA

protein sequence of rna9535

>rna9535-protein ID=rna9535-protein|Name=rna9535|organism=Nannochloropsis gaditana|type=polypeptide|length=554bp
MREGGWVVDGCNLSHPSRFLPLLPFVHPQARGLRVGNLLPFTAPSISQQF
PDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFL
LFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSF
DPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKF
GSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMP
GSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQE
TLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARM
QSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVK
CLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVP
AEEGGENPTIGAIKALNRDSKGKGEGKKDWGGKADKRGQKKKGFGGAVRK
GGEGSSQEGRQESAPETAAVGSQGVGFGLGLEEYMKGEEGKRKEGEDGEV
AEAA

mRNA from alignment at KK037254.1:111663..113665-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9535 ID=rna9535|Name=rna9535|organism=Nannochloropsis gaditana|type=mRNA|length=2003bp|location=Sequence derived from alignment at KK037254.1:111663..113665- (Nannochloropsis gaditana)
ATGCGTGAAGGAGGATGGGTTGTGGACGGTTGTAATTTATCTCACCCGTC
CCGTTTTCTTCCTTTGCTCCCGTTTGTCCACCCGCAGGCTCGAGGTCTTC
GAGTTGGCAACCTCCTCCCCTTCACAGCCCCGTCTATATCCCAGCAATTT
CCTGATAGCACTCTCCTGCTCCGACTGAGGACGTCGACTGCCGTGATGGA
TCAACTACATCAGTTCCACCATCCTCGAAGAATACAAGTCCTTTTTCCCC
TTGTCATTCTCCTCCTCTCCTTCCTCTCAAGTGGCACCCAAGGTTTCCTC
CTCTTTCCGTCCTCCATCCTCTCCTCAGCACCTTCTCGCAACATTCGCCT
CCCTCAAAGAGCTTCTCCATGTTCCTCCCGTAATCTGCCTTCCACTTCAT
CTCGACTCCTCCCCTTTTACCCAGCGTCACTGTCCTCTTCCCTCTCCTTC
GACCCTAGCCGCTTCGTCCGCCCACAGACCCAGAGTCTGGCTGCGTCTTC
CTCCTCCCCCGAAGAGGAAGGCAATAACGAAAACACGGCAGAAGAAAGCG
CGGCGATTTGGGGATTAACGGACCTGGGCAACAGCAATTTTGGAAAGTTT
GGCTCCGAGCAAGACCCGCACCGGAATATCCGTCCCCAATTTTTGGATGG
GAGAGGGGCTCCTTGGAAGGAAGGCGCAGATTTCTTGCCAGAGCTCATGG
AAATCAAAATGCGCATTCAAGGTGTCAATGTCTATCTGGTGGGCATGCCT
GGCTCGGGCAAGACGACGTTGGGCCGCATGCTGGCCGAGGGGCTGCAATA
CCGGTGGATGGACTTGGACCAATTCATTGAGCAAAAGTTGGGGAAAGCCG
CGACGAAGGTCTTCGAGGAGGACGGGGAGGAGGTATGGCGCAAGCAGGAG
ACGTTGGGCATGGGCGCCTTACAGACGTACGTCCAGACAGTGGTGAGCAC
CGGGGGAGGGATCATGCAGCGGAAGGAGAACCTGCCCTTTTTGCACAGCG
GCCTCATCGTCTGGCTCGATCTGCCGCCCGAGGGGATCGTGGCGCGCATG
CAGTCCTCGGGAGAGATCGAGAAGCGGCCGTTGCTGAAGGCGGCCTCGGA
CCCGGTCCAGGCCGTCCGTTCCTTGTACGAAGAGCGGAAAGGCAACTATG
CCCTGGCGGACGTCCGGGTCGTCCTGCGGGGGGAGGACGACGCGGTCAAA
TGCTTGAAGCGGGTGGCACACCGGATCATTGAGGAGTTGGATCTGCGGCC
TCCAAAAGCAAAGATGTGGGAGGAGAAGCGGAACAAGATGAAGAATTTGT
GGGAGACCATGAAAGCCAAGGGGAGCATGACGGATATCAACGAGGTGCCG
GCGGAGGAGGGGGGGGAGAACCCGACCATCGGGGCGATCAAGGCGTTAAA
CCGAGATAGTAAGGGCAAGGGGGAGGGGAAGAAAGATTGGGGAGGGAAGG
CGGACAAGAGAGGCCAGAAGAAGAAAGGTTTCGGGGGCGCCGTGCGGAAA
GGAGGGGAGGGGAGCTCCCAGGAGGGGAGACAGGAGTCGGCGCCGGAGAC
GGCGGCGGTGGGCTCTCAGGGGGTAGGTTTCGGACTCGGGCTGGAGGAAT
ATATGAAAGGCGAGGAGGGCAAGAGGAAAGAGGGAGAGGATGGGGAGGTG
GCGGAGGCGGCCTAGGCGTGGGGATCGGGAGAAATGAGGAGGGGTCGAGG
TGAGAGAGGACCTTTGGGGGGGAGGAGCGACGGAGACAGGAAGGCGCAGA
TGCCTGTCAGGCTGATTGTGAGGAGACGGGTGACTGAAGAGAAAATGTAG
GGGGTGGGAAAGGGCAAGGAGGAAACATTGCCTGATCGTTATGGTGCACA
AAGGGACGCATAGGCAGGAAGCGGAAAGAAAAGGTGGGAGATTTATGGCT
TGTTGAGACGGATCCGCGGGAGGCGCGACTTGCCCGGTTGAACTAGGGCA
CCTGTCTATTCTTTTAAACAAGCATAATTCACAATGTGTACGCCGCAGCA
TCC

Coding sequence (CDS) from alignment at KK037254.1:111663..113665-

>rna9535 ID=rna9535|Name=rna9535|organism=Nannochloropsis gaditana|type=CDS|length=1665bp|location=Sequence derived from alignment at KK037254.1:111663..113665- (Nannochloropsis gaditana)
ATGCGTGAAGGAGGATGGGTTGTGGACGGTTGTAATTTATCTCACCCGTC
CCGTTTTCTTCCTTTGCTCCCGTTTGTCCACCCGCAGGCTCGAGGTCTTC
GAGTTGGCAACCTCCTCCCCTTCACAGCCCCGTCTATATCCCAGCAATTT
CCTGATAGCACTCTCCTGCTCCGACTGAGGACGTCGACTGCCGTGATGGA
TCAACTACATCAGTTCCACCATCCTCGAAGAATACAAGTCCTTTTTCCCC
TTGTCATTCTCCTCCTCTCCTTCCTCTCAAGTGGCACCCAAGGTTTCCTC
CTCTTTCCGTCCTCCATCCTCTCCTCAGCACCTTCTCGCAACATTCGCCT
CCCTCAAAGAGCTTCTCCATGTTCCTCCCGTAATCTGCCTTCCACTTCAT
CTCGACTCCTCCCCTTTTACCCAGCGTCACTGTCCTCTTCCCTCTCCTTC
GACCCTAGCCGCTTCGTCCGCCCACAGACCCAGAGTCTGGCTGCGTCTTC
CTCCTCCCCCGAAGAGGAAGGCAATAACGAAAACACGGCAGAAGAAAGCG
CGGCGATTTGGGGATTAACGGACCTGGGCAACAGCAATTTTGGAAAGTTT
GGCTCCGAGCAAGACCCGCACCGGAATATCCGTCCCCAATTTTTGGATGG
GAGAGGGGCTCCTTGGAAGGAAGGCGCAGATTTCTTGCCAGAGCTCATGG
AAATCAAAATGCGCATTCAAGGTGTCAATGTCTATCTGGTGGGCATGCCT
GGCTCGGGCAAGACGACGTTGGGCCGCATGCTGGCCGAGGGGCTGCAATA
CCGGTGGATGGACTTGGACCAATTCATTGAGCAAAAGTTGGGGAAAGCCG
CGACGAAGGTCTTCGAGGAGGACGGGGAGGAGGTATGGCGCAAGCAGGAG
ACGTTGGGCATGGGCGCCTTACAGACGTACGTCCAGACAGTGGTGAGCAC
CGGGGGAGGGATCATGCAGCGGAAGGAGAACCTGCCCTTTTTGCACAGCG
GCCTCATCGTCTGGCTCGATCTGCCGCCCGAGGGGATCGTGGCGCGCATG
CAGTCCTCGGGAGAGATCGAGAAGCGGCCGTTGCTGAAGGCGGCCTCGGA
CCCGGTCCAGGCCGTCCGTTCCTTGTACGAAGAGCGGAAAGGCAACTATG
CCCTGGCGGACGTCCGGGTCGTCCTGCGGGGGGAGGACGACGCGGTCAAA
TGCTTGAAGCGGGTGGCACACCGGATCATTGAGGAGTTGGATCTGCGGCC
TCCAAAAGCAAAGATGTGGGAGGAGAAGCGGAACAAGATGAAGAATTTGT
GGGAGACCATGAAAGCCAAGGGGAGCATGACGGATATCAACGAGGTGCCG
GCGGAGGAGGGGGGGGAGAACCCGACCATCGGGGCGATCAAGGCGTTAAA
CCGAGATAGTAAGGGCAAGGGGGAGGGGAAGAAAGATTGGGGAGGGAAGG
CGGACAAGAGAGGCCAGAAGAAGAAAGGTTTCGGGGGCGCCGTGCGGAAA
GGAGGGGAGGGGAGCTCCCAGGAGGGGAGACAGGAGTCGGCGCCGGAGAC
GGCGGCGGTGGGCTCTCAGGGGGTAGGTTTCGGACTCGGGCTGGAGGAAT
ATATGAAAGGCGAGGAGGGCAAGAGGAAAGAGGGAGAGGATGGGGAGGTG
GCGGAGGCGGCCTAG

Synonyms

Publications