EWM21156.1, cds9504 (CDS) Nannochloropsis gaditana

Overview
NameEWM21156.1
Unique Namecds9504
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:112001..113665 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21156.1
Productshikimate kinase
Orig transcript idgnl|cribi|Naga_100108g2.7741.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:112001..113665 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023000Shikimate_kinase_CS
IPR000623Shikimate_kinase/TSH1
IPR027417P-loop_NTPase
Homology
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|585101226|gb|EWM21156.1| (shikimate kinase [Nannochloropsis gaditana])

HSP 1 Score: 1128.62 bits (2918), Expect = 0.000e+0
Identity = 554/554 (100.00%), Postives = 554/554 (100.00%), Query Frame = 0
Query:    1 MREGGWVVDGCNLSHPSRFLPLLPFVHPQARGLRVGNLLPFTAPSISQQFPDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKGEGKKDWGGKADKRGQKKKGFGGAVRKGGEGSSQEGRQESAPETAAVGSQGVGFGLGLEEYMKGEEGKRKEGEDGEVAEAA 554
            MREGGWVVDGCNLSHPSRFLPLLPFVHPQARGLRVGNLLPFTAPSISQQFPDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKGEGKKDWGGKADKRGQKKKGFGGAVRKGGEGSSQEGRQESAPETAAVGSQGVGFGLGLEEYMKGEEGKRKEGEDGEVAEAA
Sbjct:    1 MREGGWVVDGCNLSHPSRFLPLLPFVHPQARGLRVGNLLPFTAPSISQQFPDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKGEGKKDWGGKADKRGQKKKGFGGAVRKGGEGSSQEGRQESAPETAAVGSQGVGFGLGLEEYMKGEEGKRKEGEDGEVAEAA 554          
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|553183145|ref|XP_005853848.1| (shikimate kinase, partial [Nannochloropsis gaditana CCMP526] >gi|422295213|gb|EKU22512.1| shikimate kinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 910.983 bits (2353), Expect = 0.000e+0
Identity = 446/446 (100.00%), Postives = 446/446 (100.00%), Query Frame = 0
Query:   29 QARGLRVGNLLPFTAPSISQQFPDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKG 474
            QARGLRVGNLLPFTAPSISQQFPDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKG
Sbjct:    1 QARGLRVGNLLPFTAPSISQQFPDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKG 446          
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|1209846483|dbj|GAX35750.1| (shikimate kinase [Nodularia sp. NIES-3585])

HSP 1 Score: 146.362 bits (368), Expect = 1.627e-37
Identity = 76/175 (43.43%), Postives = 116/175 (66.29%), Query Frame = 0
Query:  239 IQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEEL 413
            +QGVN+YL+GM G+GKTT+G++LA+ L YR++D D  I Q  GK+  ++F E+GE  +R+ E+  +  +  Y Q  V+TGGGI+ R+EN  +LH GLIVWLD+P E +  R+    E   RPLL+ A DP   +RSL E+R   Y+ AD+++ ++ E+      + +A+RIIE +
Sbjct:    5 LQGVNLYLIGMMGAGKTTVGQLLAKHLGYRFLDTDSVITQSAGKSINQLFAEEGEAAFRQLESDVLAQVCAYTQLTVATGGGIVLRRENWSYLHHGLIVWLDVPVELLFTRL---AEDTTRPLLQDA-DPKGKLRSLLEQRTPLYSQADLKITVKAEETP----EEIANRIIEAI 171          
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|1210249351|dbj|BAZ68362.1| (shikimate kinase [Fischerella sp. NIES-4106])

HSP 1 Score: 145.976 bits (367), Expect = 2.581e-37
Identity = 70/172 (40.70%), Postives = 114/172 (66.28%), Query Frame = 0
Query:  238 RIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRI 409
            R+QG+N+YL+GM G+GKTTLGRMLA  L+Y ++D D  +E+  GK   ++F E+GE  +R+ E+  +  +  + + V++TGGGI+ R++N  +LH G+I+WLD+P E +  R+    E   RPLL+  +DP   +RSL E+R+  Y  AD+R+ +  E+ + + +KR+   I
Sbjct:    4 RLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDNLLEKAAGKTINQLFAEEGEAAFRQLESQVLAQVCAFTKLVIATGGGIILRRDNWSYLHHGIIIWLDVPVEILYKRL---AEDTTRPLLQ-DTDPQGKLRSLLEQRQALYNQADLRITITAEETSEQIIKRIIEAI 171          
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|703199722|ref|WP_033377576.1| (shikimate kinase [Fischerella muscicola])

HSP 1 Score: 144.821 bits (364), Expect = 6.907e-37
Identity = 71/176 (40.34%), Postives = 116/176 (65.91%), Query Frame = 0
Query:  234 EIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRI 409
            ++  R+QG+N+YL+GM G+GKTTLGRMLA  L+Y ++D D  +E+  GK   ++F E+GE  +R+ E+  +  +  + + V++TGGGI+ R++N  +LH G+I+WLD+P E +  R+    E   RPLL+  +DP   +RSL E+R+  Y  AD+RV +  E+ + + +KR+   I
Sbjct:    4 QVNERLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDDLLEKAAGKTINQLFAEEGETAFRQLESQVLAQVCAFTKLVIATGGGIILRRDNWSYLHHGIIIWLDVPVEILYKRL---AEDTTRPLLQ-DTDPQGKLRSLLEQRQALYNQADLRVPVTAEETSEQIIKRIIEAI 175          
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|299473618|emb|CBN78012.1| (Shikimate Kinase [Ectocarpus siliculosus])

HSP 1 Score: 145.206 bits (365), Expect = 1.476e-36
Identity = 81/203 (39.90%), Postives = 123/203 (60.59%), Query Frame = 0
Query:  234 EIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGL-QYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARM-QSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLW 434
            E+  R++G NV+ VGM G+GK+T+ R LA+ + +Y ++D D  IE+ LG +  +VF +DGEE +R  E+  +  + +YV+  V+TGGGI+   +N   + +G++VWLD+ P+ I  R+ +   E+ KRPLL A  DP   +  L E+RK  YA ADV V L+ ED        V + I+E +D  PPK + W+EK N     W
Sbjct:   22 ELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEGFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLL-AGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 223          
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|1174983014|ref|WP_081656159.1| (shikimate kinase [Fischerella sp. PCC 9431])

HSP 1 Score: 143.665 bits (361), Expect = 1.882e-36
Identity = 70/176 (39.77%), Postives = 116/176 (65.91%), Query Frame = 0
Query:  234 EIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRI 409
            ++  R+QG+N+YL+GM G+GKTTLGRMLA  L+Y ++D D  +E+  GK   ++F E+GE  +R+ E+  +  +  + + V++TGGGI+ R++N  +LH G+I+WLD+P E +  R+    E   RPLL+  SDP   +RSL E+R+  Y  AD+R+ +  E+ + + ++R+   I
Sbjct:    4 QVNERLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDDLLEKAAGKTINQLFAEEGEAAFRQLESQVLAQVCAFTKLVIATGGGIILRRDNWSYLHHGIIIWLDVPVEILYQRL---AEDTTRPLLQ-DSDPQGKLRSLLEQRQVLYNQADLRITVTAEETSEEIIQRIIEAI 175          
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|1176543695|ref|WP_082370687.1| (shikimate kinase [Hapalosiphon sp. MRB220])

HSP 1 Score: 142.51 bits (358), Expect = 6.033e-36
Identity = 69/176 (39.20%), Postives = 116/176 (65.91%), Query Frame = 0
Query:  234 EIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRI 409
            ++  R+QG+N+YL+GM G+GKTTLGRMLA  L+Y ++D D  +E+  GK   ++F E+GE  +R+ E+  +  +  + + V++TGGGI+ +++N  +LH G+I+WLD+P E +  R+    E   RPLL+  SDP   +RSL E+R+  Y  AD+R+ +  E+ + + ++R+   I
Sbjct:    4 QVNERLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDDLLEKAAGKTINQLFAEEGEAAFRQLESQVLAQVCAFTKLVIATGGGIILKRDNWSYLHHGIIIWLDVPVEILYQRL---AEDTTRPLLQ-DSDPQGKLRSLLEQRQVLYNQADLRITVTAEETSEEIIQRIIEAI 175          
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|648366607|ref|WP_026082885.1| (shikimate kinase [Mastigocladopsis repens])

HSP 1 Score: 142.124 bits (357), Expect = 6.498e-36
Identity = 77/176 (43.75%), Postives = 118/176 (67.05%), Query Frame = 0
Query:  239 IQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLG-KAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEEL 413
            +QGVN+YL+GM G+GKTT+G +LA+ L Y ++D D  IE+  G K  TK+F +DGE V+RK E+  +  +  + + V++TGGGI+ R+EN  +LH GLIVWLD+P E +  R+    E   RPLL+ A DP   +RSL E+R+  YA AD+++ +  E+      +++A R++EE+
Sbjct:    6 LQGVNLYLIGMMGAGKTTVGHLLAQHLSYGFVDTDTVIEKVAGDKPITKIFADDGEAVFRKLESKVLSQVCAFTKLVIATGGGIVVRRENWSYLHHGLIVWLDVPAEVLYRRL---AEDTTRPLLQDA-DPQGKLRSLLEQRQPLYAQADLQITVSEEETP----EQIAARVLEEI 173          
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|922991223|gb|KOP27249.1| (shikimate kinase [Hapalosiphon sp. MRB220])

HSP 1 Score: 142.124 bits (357), Expect = 7.672e-36
Identity = 69/172 (40.12%), Postives = 114/172 (66.28%), Query Frame = 0
Query:  238 RIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRI 409
            R+QG+N+YL+GM G+GKTTLGRMLA  L+Y ++D D  +E+  GK   ++F E+GE  +R+ E+  +  +  + + V++TGGGI+ +++N  +LH G+I+WLD+P E +  R+    E   RPLL+  SDP   +RSL E+R+  Y  AD+R+ +  E+ + + ++R+   I
Sbjct:    4 RLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDDLLEKAAGKTINQLFAEEGEAAFRQLESQVLAQVCAFTKLVIATGGGIILKRDNWSYLHHGIIIWLDVPVEILYQRL---AEDTTRPLLQ-DSDPQGKLRSLLEQRQVLYNQADLRITVTAEETSEEIIQRIIEAI 171          
The following BLAST results are available for this feature:
BLAST of EWM21156.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101226|gb|EWM21156.1|0.000e+0100.00shikimate kinase [Nannochloropsis gaditana][more]
gi|553183145|ref|XP_005853848.1|0.000e+0100.00shikimate kinase, partial [Nannochloropsis gaditan... [more]
gi|1209846483|dbj|GAX35750.1|1.627e-3743.43shikimate kinase [Nodularia sp. NIES-3585][more]
gi|1210249351|dbj|BAZ68362.1|2.581e-3740.70shikimate kinase [Fischerella sp. NIES-4106][more]
gi|703199722|ref|WP_033377576.1|6.907e-3740.34shikimate kinase [Fischerella muscicola][more]
gi|299473618|emb|CBN78012.1|1.476e-3639.90Shikimate Kinase [Ectocarpus siliculosus][more]
gi|1174983014|ref|WP_081656159.1|1.882e-3639.77shikimate kinase [Fischerella sp. PCC 9431][more]
gi|1176543695|ref|WP_082370687.1|6.033e-3639.20shikimate kinase [Hapalosiphon sp. MRB220][more]
gi|648366607|ref|WP_026082885.1|6.498e-3643.75shikimate kinase [Mastigocladopsis repens][more]
gi|922991223|gb|KOP27249.1|7.672e-3640.12shikimate kinase [Hapalosiphon sp. MRB220][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9535rna9535Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications