EWM21156.1, cds9504 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|585101226|gb|EWM21156.1| (shikimate kinase [Nannochloropsis gaditana]) HSP 1 Score: 1128.62 bits (2918), Expect = 0.000e+0 Identity = 554/554 (100.00%), Postives = 554/554 (100.00%), Query Frame = 0 Query: 1 MREGGWVVDGCNLSHPSRFLPLLPFVHPQARGLRVGNLLPFTAPSISQQFPDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKGEGKKDWGGKADKRGQKKKGFGGAVRKGGEGSSQEGRQESAPETAAVGSQGVGFGLGLEEYMKGEEGKRKEGEDGEVAEAA 554 MREGGWVVDGCNLSHPSRFLPLLPFVHPQARGLRVGNLLPFTAPSISQQFPDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKGEGKKDWGGKADKRGQKKKGFGGAVRKGGEGSSQEGRQESAPETAAVGSQGVGFGLGLEEYMKGEEGKRKEGEDGEVAEAA Sbjct: 1 MREGGWVVDGCNLSHPSRFLPLLPFVHPQARGLRVGNLLPFTAPSISQQFPDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKGEGKKDWGGKADKRGQKKKGFGGAVRKGGEGSSQEGRQESAPETAAVGSQGVGFGLGLEEYMKGEEGKRKEGEDGEVAEAA 554
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|553183145|ref|XP_005853848.1| (shikimate kinase, partial [Nannochloropsis gaditana CCMP526] >gi|422295213|gb|EKU22512.1| shikimate kinase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 910.983 bits (2353), Expect = 0.000e+0 Identity = 446/446 (100.00%), Postives = 446/446 (100.00%), Query Frame = 0 Query: 29 QARGLRVGNLLPFTAPSISQQFPDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKG 474 QARGLRVGNLLPFTAPSISQQFPDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKG Sbjct: 1 QARGLRVGNLLPFTAPSISQQFPDSTLLLRLRTSTAVMDQLHQFHHPRRIQVLFPLVILLLSFLSSGTQGFLLFPSSILSSAPSRNIRLPQRASPCSSRNLPSTSSRLLPFYPASLSSSLSFDPSRFVRPQTQSLAASSSSPEEEGNNENTAEESAAIWGLTDLGNSNFGKFGSEQDPHRNIRPQFLDGRGAPWKEGADFLPELMEIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLWETMKAKGSMTDINEVPAEEGGENPTIGAIKALNRDSKGKG 446
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|1209846483|dbj|GAX35750.1| (shikimate kinase [Nodularia sp. NIES-3585]) HSP 1 Score: 146.362 bits (368), Expect = 1.627e-37 Identity = 76/175 (43.43%), Postives = 116/175 (66.29%), Query Frame = 0 Query: 239 IQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEEL 413 +QGVN+YL+GM G+GKTT+G++LA+ L YR++D D I Q GK+ ++F E+GE +R+ E+ + + Y Q V+TGGGI+ R+EN +LH GLIVWLD+P E + R+ E RPLL+ A DP +RSL E+R Y+ AD+++ ++ E+ + +A+RIIE + Sbjct: 5 LQGVNLYLIGMMGAGKTTVGQLLAKHLGYRFLDTDSVITQSAGKSINQLFAEEGEAAFRQLESDVLAQVCAYTQLTVATGGGIVLRRENWSYLHHGLIVWLDVPVELLFTRL---AEDTTRPLLQDA-DPKGKLRSLLEQRTPLYSQADLKITVKAEETP----EEIANRIIEAI 171
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|1210249351|dbj|BAZ68362.1| (shikimate kinase [Fischerella sp. NIES-4106]) HSP 1 Score: 145.976 bits (367), Expect = 2.581e-37 Identity = 70/172 (40.70%), Postives = 114/172 (66.28%), Query Frame = 0 Query: 238 RIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRI 409 R+QG+N+YL+GM G+GKTTLGRMLA L+Y ++D D +E+ GK ++F E+GE +R+ E+ + + + + V++TGGGI+ R++N +LH G+I+WLD+P E + R+ E RPLL+ +DP +RSL E+R+ Y AD+R+ + E+ + + +KR+ I Sbjct: 4 RLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDNLLEKAAGKTINQLFAEEGEAAFRQLESQVLAQVCAFTKLVIATGGGIILRRDNWSYLHHGIIIWLDVPVEILYKRL---AEDTTRPLLQ-DTDPQGKLRSLLEQRQALYNQADLRITITAEETSEQIIKRIIEAI 171
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|703199722|ref|WP_033377576.1| (shikimate kinase [Fischerella muscicola]) HSP 1 Score: 144.821 bits (364), Expect = 6.907e-37 Identity = 71/176 (40.34%), Postives = 116/176 (65.91%), Query Frame = 0 Query: 234 EIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRI 409 ++ R+QG+N+YL+GM G+GKTTLGRMLA L+Y ++D D +E+ GK ++F E+GE +R+ E+ + + + + V++TGGGI+ R++N +LH G+I+WLD+P E + R+ E RPLL+ +DP +RSL E+R+ Y AD+RV + E+ + + +KR+ I Sbjct: 4 QVNERLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDDLLEKAAGKTINQLFAEEGETAFRQLESQVLAQVCAFTKLVIATGGGIILRRDNWSYLHHGIIIWLDVPVEILYKRL---AEDTTRPLLQ-DTDPQGKLRSLLEQRQALYNQADLRVPVTAEETSEQIIKRIIEAI 175
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|299473618|emb|CBN78012.1| (Shikimate Kinase [Ectocarpus siliculosus]) HSP 1 Score: 145.206 bits (365), Expect = 1.476e-36 Identity = 81/203 (39.90%), Postives = 123/203 (60.59%), Query Frame = 0 Query: 234 EIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGL-QYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARM-QSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEELDLRPPKAKMWEEKRNKMKNLW 434 E+ R++G NV+ VGM G+GK+T+ R LA+ + +Y ++D D IE+ LG + +VF +DGEE +R E+ + + +YV+ V+TGGGI+ +N + +G++VWLD+ P+ I R+ + E+ KRPLL A DP + L E+RK YA ADV V L+ ED V + I+E +D PPK + W+EK N W Sbjct: 22 ELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEGFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLL-AGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEW 223
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|1174983014|ref|WP_081656159.1| (shikimate kinase [Fischerella sp. PCC 9431]) HSP 1 Score: 143.665 bits (361), Expect = 1.882e-36 Identity = 70/176 (39.77%), Postives = 116/176 (65.91%), Query Frame = 0 Query: 234 EIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRI 409 ++ R+QG+N+YL+GM G+GKTTLGRMLA L+Y ++D D +E+ GK ++F E+GE +R+ E+ + + + + V++TGGGI+ R++N +LH G+I+WLD+P E + R+ E RPLL+ SDP +RSL E+R+ Y AD+R+ + E+ + + ++R+ I Sbjct: 4 QVNERLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDDLLEKAAGKTINQLFAEEGEAAFRQLESQVLAQVCAFTKLVIATGGGIILRRDNWSYLHHGIIIWLDVPVEILYQRL---AEDTTRPLLQ-DSDPQGKLRSLLEQRQVLYNQADLRITVTAEETSEEIIQRIIEAI 175
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|1176543695|ref|WP_082370687.1| (shikimate kinase [Hapalosiphon sp. MRB220]) HSP 1 Score: 142.51 bits (358), Expect = 6.033e-36 Identity = 69/176 (39.20%), Postives = 116/176 (65.91%), Query Frame = 0 Query: 234 EIKMRIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRI 409 ++ R+QG+N+YL+GM G+GKTTLGRMLA L+Y ++D D +E+ GK ++F E+GE +R+ E+ + + + + V++TGGGI+ +++N +LH G+I+WLD+P E + R+ E RPLL+ SDP +RSL E+R+ Y AD+R+ + E+ + + ++R+ I Sbjct: 4 QVNERLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDDLLEKAAGKTINQLFAEEGEAAFRQLESQVLAQVCAFTKLVIATGGGIILKRDNWSYLHHGIIIWLDVPVEILYQRL---AEDTTRPLLQ-DSDPQGKLRSLLEQRQVLYNQADLRITVTAEETSEEIIQRIIEAI 175
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|648366607|ref|WP_026082885.1| (shikimate kinase [Mastigocladopsis repens]) HSP 1 Score: 142.124 bits (357), Expect = 6.498e-36 Identity = 77/176 (43.75%), Postives = 118/176 (67.05%), Query Frame = 0 Query: 239 IQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLG-KAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRIIEEL 413 +QGVN+YL+GM G+GKTT+G +LA+ L Y ++D D IE+ G K TK+F +DGE V+RK E+ + + + + V++TGGGI+ R+EN +LH GLIVWLD+P E + R+ E RPLL+ A DP +RSL E+R+ YA AD+++ + E+ +++A R++EE+ Sbjct: 6 LQGVNLYLIGMMGAGKTTVGHLLAQHLSYGFVDTDTVIEKVAGDKPITKIFADDGEAVFRKLESKVLSQVCAFTKLVIATGGGIVVRRENWSYLHHGLIVWLDVPAEVLYRRL---AEDTTRPLLQDA-DPQGKLRSLLEQRQPLYAQADLQITVSEEETP----EQIAARVLEEI 173
BLAST of EWM21156.1 vs. NCBI_GenBank
Match: gi|922991223|gb|KOP27249.1| (shikimate kinase [Hapalosiphon sp. MRB220]) HSP 1 Score: 142.124 bits (357), Expect = 7.672e-36 Identity = 69/172 (40.12%), Postives = 114/172 (66.28%), Query Frame = 0 Query: 238 RIQGVNVYLVGMPGSGKTTLGRMLAEGLQYRWMDLDQFIEQKLGKAATKVFEEDGEEVWRKQETLGMGALQTYVQTVVSTGGGIMQRKENLPFLHSGLIVWLDLPPEGIVARMQSSGEIEKRPLLKAASDPVQAVRSLYEERKGNYALADVRVVLRGEDDAVKCLKRVAHRI 409 R+QG+N+YL+GM G+GKTTLGRMLA L+Y ++D D +E+ GK ++F E+GE +R+ E+ + + + + V++TGGGI+ +++N +LH G+I+WLD+P E + R+ E RPLL+ SDP +RSL E+R+ Y AD+R+ + E+ + + ++R+ I Sbjct: 4 RLQGINLYLIGMMGAGKTTLGRMLARELRYGFVDTDDLLEKAAGKTINQLFAEEGEAAFRQLESQVLAQVCAFTKLVIATGGGIILKRDNWSYLHHGIIIWLDVPVEILYQRL---AEDTTRPLLQ-DSDPQGKLRSLLEQRQVLYNQADLRITVTAEETSEEIIQRIIEAI 171 The following BLAST results are available for this feature:
BLAST of EWM21156.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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