rna9534, rna9534 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9534
Unique Name	rna9534
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2751
Alignment location	KK037254.1:103943..105484 -

Link to JBrowse

Properties


Property Name	Value
Product	cleavage and polyadenylation specificity factor subunit 1
Orig transcript id	gnl\|cribi\|Naga_100111g15.4969.mrna
Orig protein id	gnl\|cribi\|Naga_100111g15.4969
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:103943..105484 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100111g15	gene9255	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21170.1	cds9503	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9534	rna9534-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:103943..105484-
coding sequence from alignment at KK037254.1:103943..105484-

mRNA sequence

>rna9534 ID=rna9534|Name=rna9534|organism=Nannochloropsis gaditana|type=mRNA|length=2751bp
ATGTCTTATTACATCCAAGACAGGAACCACATCTCAGTAGAGATTCAGAT
AAGACTACCTTTGAGCTCGGCAGCATATTGGTGCCGTCATCACACGATGC
GGAATTCGAGCACAAAAAGAAAGACATGGACAGTCAGCCTCCGTAAAAGT
ATCCACCGGTTTTTCCATCCGCAATACATTACATCTGCTGTGATGCTCAT
CCTTTTGGCTATATCTTCACCGTCAATACCTTGTGTAAAGGCCTCCACAA
TGGCAAAAAATCCACAAATTGCGAAACCTCCCCACGTCCTTATGATTGTC
GTCGATGATGCGGGTGTTCAAGATGTGGGGTATAACGCAAGTCCTGAGTC
ACCTCTTCGGGGCAAGACCCCCGTTTTGGACTCATTGGCCGCCGAGTCTG
TACGTCTTAAGGAATACTATGTCCATCCGGTCTGCACACCTACGCGGGCA
GCTCTGCTGACAGGTCGCTATGCCGTGAACGTCGGTATGCCTTTTCCCTT
AATCGGGGACGCAATTTCTGGCCTTGATGGGAGCATACCCACATTACCTG
AAATGCTGAAGAGTGAGGCTAACTACAGTACGCACCTTGTCGGGAAGTGG
CATCTGGGCGCAGCCAAGGCCAAAAATCGCCCTCTGGCCCGTGGATTTGA
TTCCTTTTACGGCCTCTTAGGTGCCAGCTTTGATCATTATACCAAAAAAA
TGGGAGAGGTGCGAGACTTGTGGAAGAACGAAGCGGAAGTCCCAGCCAAG
GAGGTGGATGAAAAGGAGCACGCCACCACTCTCTTCAGCCGGGAGGCTGT
GAAGGTCATAGAGGAGCATTCTGCCCGGGGACATGCGGGCGCAAAGGATG
GAGATATGGATCCTCTCTTTCTGTACTTGGCCTACTCGGCTCCTCACGCC
CCCTTACAGGCGGACGAGAAATTCATGAAGCTGTGCAGCGATGTGCCGAA
CCGGCATCGGCGGACTTTCTGTGCCATGATGGCACAGTTGGATGAAGGCA
TTGGGAATGTGACAGCAAGTTTGAAGGCGCATGGCATGTGGGAGGACACG
GTTGTGGTGTTTACCAGTGATAACGGGGGCTACTTCCTGGTGGGCGGATT
CAATTATAACTACCGAGGTGGCAAAAGCGGTGGATGGGAAGGTGGTGTCC
GGGTCCCCGCCTTCATTCGCGCACCGAAACGATACAATTTCGCCCCCAGG
GATTTTAGGGGAATGGCGCACGTGGCTGATTGGATGCCAACATTGATGGG
CATGGCGACTGGGAGGGAAGAAGGGAGGGAGAGGATGGGAGATGGCTACG
ATTTGAGGAAAGCTTTCCGGGGAGATGAGGAGGGTGGAAAAGAGAAATCG
CCTAGAAATGAAGCGCTGCTTCAACTAGATATCTTCCAGAACACGTCGGC
GTACAGGAGTGGGTGCTTTAAGTTGCTTCTCGGGTGCCCGGGGATCACAG
AGCTCAGCTTGGAACCGACTGAGACCTTGTGGGTGGTCAAAGACGAGGAG
GAAGAAGAGAAAGAGGAAGGGGAAGAGGAGAACGGTGTAAGAAAAATTTC
GCCCTTTATGAGAGACGTTGAGGCGAAGCTTTTGGAGTGGATTGCCGACT
TGTTGGATGCGATAATGTCGCCTGCTAACAACCAGGGCATCAAGTATCTC
GCCTTTCTTAACATAGCACTCTTCAATGATTGGTGGACTCGTACCTCCTT
TTTTAATTTCTTAAATTCCCGATACCAGGACCTAACGATGTGGAAGGGGA
CCCTCGGCGAGCACGGCCCTGTCTTAGATTGGAACCGGGACTACGGCCCC
AAGATCATGCTCTACAACCTCTGCGAGGACCCGGAGGAGAGGCACAATCT
GGCCTTCAAGAAGGGAGGAAAATACGTGGTAGACAGGCTTTACAGAGAAA
TGATGTCGATTGTCAAAGATGCGCCCCTTCAGTTTGCCGGAGACCTGGTC
ATTTCTTTGCCTGGAGAGCGAGGAAGGAACCACAGCGAGTTCCCCTCGCA
ACCCTTCTTGCAGGAGGCGGAGGACATCTCCACGTTCGCTTGGGTTCTCG
ACCGCGGTTTCCATGCGCTGAACCGGCGCATCACGTACTTGGTCCATGGC
CTCTCGGTCTTGTTGCTTTTGACGATAGTCTGGGGGTGGTGCGTTGTGGA
AAGCATATTTGAGGAAAAGAGGAGAAAGAGGGAAATCGGCGCCCTTAAGA
AGGAGTAGAGAGCAGAGGAAGGGATGGTAAATCTCCAAGGTAGGGATCCT
AACGTCAGGGCAAGGATAATGAAAAAAAAGGAAGAGCGTGACGCTGCGAT
TAGTGGGCGTAGAGGGTATCATCGGGATAGGAATGATGGAAGTGGCGATG
CCGCGTACAGGAGAGTTAAATAGCAGAAGCTGTTGATAATATTTAAGTAT
ATGTAAAACCCATAGAGAGACCGCTGTCCATCTCAGCAAGTAAGAGACCA
AGCACTGGAATGACGGAGGATACGAAGAGTCAATGACACAGGAGCCTCGG
TGCGGGCCCCGCGGCAGTCTTACTCCAGGCATGAGAAGTAGCTGAACAAT
GTTTGAAAACGAGACGAATTGAGCGGAGACATGTCAAGTGGTGTGTGTGG
GAGTGTGCCTCGTTCTGAATGCGATCACCCGTTTAAGATTCATTCATCCC
AGAAGCCTTTAAAGCTTGAGATATTTCTAAATTTGAGAGCGTCAAATCGT
ATTCAGAAAAGCGTTCGAAAAAAAGAAATAGAGGCATGATGTGTCTCAAG
G

protein sequence of rna9534

>rna9534-protein ID=rna9534-protein|Name=rna9534|organism=Nannochloropsis gaditana|type=polypeptide|length=476bp
GTSGGGGGGGGDGGVGEEEEDEEDEERRKLGASKRVGASAQVDVGLTKTG
ERLTDFTSAKAEYLGGPPLPAVWAGGHQIFIMGGAPFGVTSVIPLEPFER
GLALMVYHRRSPSTPAFPPGPPSHQSHFRERYPNRAPPPADLPPFQAADT
YLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYAGLTSPPTLTLVDQYSQR
SGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRV
VKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVV
DPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQ
HTRMAEVPRPGAYRAGVRVMVFGSVEGGVGALVPVEEKVYRRLYALQAVM
VNALPHVGAFNPRGFRLVEARGWAQGRKKGTLDGELLWRFAGLSVGKQED
LASAIGTSREMVLESLLEVDMMTWTL

mRNA from alignment at KK037254.1:103943..105484-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9534 ID=rna9534|Name=rna9534|organism=Nannochloropsis gaditana|type=mRNA|length=1542bp|location=Sequence derived from alignment at KK037254.1:103943..105484- (Nannochloropsis gaditana)
GGAACGAGCGGAGGAGGAGGCGGAGGGGGAGGGGACGGCGGGGTGGGGGA
GGAGGAGGAGGACGAAGAGGACGAGGAGCGGCGGAAGCTGGGGGCATCCA
AGCGGGTGGGGGCGAGCGCGCAAGTGGATGTGGGCTTGACCAAGACGGGC
GAGCGTCTCACGGATTTCACCTCCGCCAAGGCAGAATACCTGGGGGGCCC
TCCCCTCCCCGCGGTCTGGGCGGGCGGCCACCAGATTTTCATCATGGGGG
GGGCGCCTTTCGGAGTCACGTCCGTGATCCCTCTGGAGCCCTTTGAGCGG
GGCTTGGCCCTGATGGTCTACCACCGACGGTCCCCGTCCACCCCCGCCTT
TCCCCCGGGGCCGCCCTCCCACCAATCCCATTTTCGAGAACGCTACCCGA
ATCGGGCCCCGCCCCCCGCCGACCTCCCTCCCTTCCAGGCCGCCGATACC
TACCTGGCCGTCGGCACGTGCACTGTCCGGGCCAAAGGCGAGGACGTGCC
CAGCAAGGGGCGGCTGCTCATGTACCGGATCTCGCTCGATCCGTACGCGG
GCCTGACGTCTCCCCCCACCCTCACCCTGGTCGACCAGTATTCCCAACGT
TCGGGTCCCCCCACGGCCATTGCCCAGCTGGGTCCGCACATCATCATCGC
TGCGGGCCCGACCCTCTGGGTGTATGCCTTCTCGGCCCGGGAGAAACTCA
AGCCGATCGCCTTTTACGACGCAGATTTTTACGTGGTCTCCTTGCGGGTC
GTGAAGACGCTGGTGGCGGTCACGGACGCCTACCATTCCGTCCACCTCCT
TCGCTGGCACGAGCACGATCCGGCCCACACGCTGGAACTGATGGGAAAGG
ACTATTCACCCATCGTCTCCGCGCAACCGGGAGGCTCGCACTTTGTCGTC
GATCCACCCTCCCTGGGCATGCTCGTCGGGGATTCCCGGGGCAATCTGCA
ACTGTTACAGTACGATCCTGCCGACGTGGAGTCCCGAGGAGGAAACCGGT
TGGTACGACGGGCGGACTTCCACCTCTCCCACCGCCTGTCCTTCCTCCAA
CATACACGGATGGCCGAGGTACCTCGCCCCGGTGCTTATCGAGCCGGAGT
CCGAGTCATGGTGTTCGGGAGCGTGGAGGGAGGAGTCGGGGCGCTGGTGC
CGGTGGAGGAAAAAGTCTACCGGCGCTTGTACGCCCTCCAGGCCGTGATG
GTCAATGCTTTGCCGCACGTGGGGGCCTTCAATCCCCGAGGTTTCCGGCT
GGTGGAGGCGCGTGGATGGGCGCAAGGCCGGAAAAAAGGGACGCTGGACG
GGGAGTTGCTGTGGCGGTTCGCAGGCTTAAGTGTGGGGAAACAGGAGGAC
TTGGCGAGTGCGATAGGGACAAGCAGGGAGATGGTTCTGGAGTCTTTGTT
GGAGGTGGATATGATGACGTGGACGCTGTAATATAGGAAAGATTTGTGGA
GGGCGACTACGAATATAGGGACAAGGGTAAATGCCTTTCGGTTGAAGAAC
ATGTCTCAAACAAAGCAATAAGAAATGTTTAAGCAATTTTGA

Coding sequence (CDS) from alignment at KK037254.1:103943..105484-

>rna9534 ID=rna9534|Name=rna9534|organism=Nannochloropsis gaditana|type=CDS|length=1431bp|location=Sequence derived from alignment at KK037254.1:103943..105484- (Nannochloropsis gaditana)
GGAACGAGCGGAGGAGGAGGCGGAGGGGGAGGGGACGGCGGGGTGGGGGA
GGAGGAGGAGGACGAAGAGGACGAGGAGCGGCGGAAGCTGGGGGCATCCA
AGCGGGTGGGGGCGAGCGCGCAAGTGGATGTGGGCTTGACCAAGACGGGC
GAGCGTCTCACGGATTTCACCTCCGCCAAGGCAGAATACCTGGGGGGCCC
TCCCCTCCCCGCGGTCTGGGCGGGCGGCCACCAGATTTTCATCATGGGGG
GGGCGCCTTTCGGAGTCACGTCCGTGATCCCTCTGGAGCCCTTTGAGCGG
GGCTTGGCCCTGATGGTCTACCACCGACGGTCCCCGTCCACCCCCGCCTT
TCCCCCGGGGCCGCCCTCCCACCAATCCCATTTTCGAGAACGCTACCCGA
ATCGGGCCCCGCCCCCCGCCGACCTCCCTCCCTTCCAGGCCGCCGATACC
TACCTGGCCGTCGGCACGTGCACTGTCCGGGCCAAAGGCGAGGACGTGCC
CAGCAAGGGGCGGCTGCTCATGTACCGGATCTCGCTCGATCCGTACGCGG
GCCTGACGTCTCCCCCCACCCTCACCCTGGTCGACCAGTATTCCCAACGT
TCGGGTCCCCCCACGGCCATTGCCCAGCTGGGTCCGCACATCATCATCGC
TGCGGGCCCGACCCTCTGGGTGTATGCCTTCTCGGCCCGGGAGAAACTCA
AGCCGATCGCCTTTTACGACGCAGATTTTTACGTGGTCTCCTTGCGGGTC
GTGAAGACGCTGGTGGCGGTCACGGACGCCTACCATTCCGTCCACCTCCT
TCGCTGGCACGAGCACGATCCGGCCCACACGCTGGAACTGATGGGAAAGG
ACTATTCACCCATCGTCTCCGCGCAACCGGGAGGCTCGCACTTTGTCGTC
GATCCACCCTCCCTGGGCATGCTCGTCGGGGATTCCCGGGGCAATCTGCA
ACTGTTACAGTACGATCCTGCCGACGTGGAGTCCCGAGGAGGAAACCGGT
TGGTACGACGGGCGGACTTCCACCTCTCCCACCGCCTGTCCTTCCTCCAA
CATACACGGATGGCCGAGGTACCTCGCCCCGGTGCTTATCGAGCCGGAGT
CCGAGTCATGGTGTTCGGGAGCGTGGAGGGAGGAGTCGGGGCGCTGGTGC
CGGTGGAGGAAAAAGTCTACCGGCGCTTGTACGCCCTCCAGGCCGTGATG
GTCAATGCTTTGCCGCACGTGGGGGCCTTCAATCCCCGAGGTTTCCGGCT
GGTGGAGGCGCGTGGATGGGCGCAAGGCCGGAAAAAAGGGACGCTGGACG
GGGAGTTGCTGTGGCGGTTCGCAGGCTTAAGTGTGGGGAAACAGGAGGAC
TTGGCGAGTGCGATAGGGACAAGCAGGGAGATGGTTCTGGAGTCTTTGTT
GGAGGTGGATATGATGACGTGGACGCTGTAA

Synonyms

Publications