EWM21170.1, cds9503 (CDS) Nannochloropsis gaditana

Overview
NameEWM21170.1
Unique Namecds9503
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:104054..105484 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21170.1
Productcleavage and polyadenylation specificity factor subunit 1
Partialtrue
Orig transcript idgnl|cribi|Naga_100111g15.4969.mrna
GbkeyCDS
End range.
End range105484
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:104054..105484 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR004871Cleavage/polyA-sp_fac_asu_C
Homology
BLAST of EWM21170.1 vs. NCBI_GenBank
Match: gi|585101243|gb|EWM21170.1| (cleavage and polyadenylation specificity factor subunit 1, partial [Nannochloropsis gaditana])

HSP 1 Score: 959.518 bits (2479), Expect = 0.000e+0
Identity = 476/476 (100.00%), Postives = 476/476 (100.00%), Query Frame = 0
Query:    1 GTSGGGGGGGGDGGVGEEEEDEEDEERRKLGASKRVGASAQVDVGLTKTGERLTDFTSAKAEYLGGPPLPAVWAGGHQIFIMGGAPFGVTSVIPLEPFERGLALMVYHRRSPSTPAFPPGPPSHQSHFRERYPNRAPPPADLPPFQAADTYLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYAGLTSPPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVRVMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQGRKKGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL 476
            GTSGGGGGGGGDGGVGEEEEDEEDEERRKLGASKRVGASAQVDVGLTKTGERLTDFTSAKAEYLGGPPLPAVWAGGHQIFIMGGAPFGVTSVIPLEPFERGLALMVYHRRSPSTPAFPPGPPSHQSHFRERYPNRAPPPADLPPFQAADTYLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYAGLTSPPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVRVMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQGRKKGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL
Sbjct:    1 GTSGGGGGGGGDGGVGEEEEDEEDEERRKLGASKRVGASAQVDVGLTKTGERLTDFTSAKAEYLGGPPLPAVWAGGHQIFIMGGAPFGVTSVIPLEPFERGLALMVYHRRSPSTPAFPPGPPSHQSHFRERYPNRAPPPADLPPFQAADTYLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYAGLTSPPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVRVMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQGRKKGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL 476          
BLAST of EWM21170.1 vs. NCBI_GenBank
Match: gi|553181483|ref|XP_005853574.1| (cleavage and polyadenylation specificity factor subunit 1 [Nannochloropsis gaditana CCMP526] >gi|422295485|gb|EKU22784.1| cleavage and polyadenylation specificity factor subunit 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 800.816 bits (2067), Expect = 0.000e+0
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0
Query:   82 MGGAPFGVTSVIPLEPFERGLALMVYHRRSPSTPAFPPGPPSHQSHFRERYPNRAPPPADLPPFQAADTYLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYAGLTSPPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVRVMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQGRKKGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL 476
            MGGAPFGVTSVIPLEPFERGLALMVYHRRSPSTPAFPPGPPSHQSHFRERYPNRAPPPADLPPFQAADTYLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYAGLTSPPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVRVMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQGRKKGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL
Sbjct:    1 MGGAPFGVTSVIPLEPFERGLALMVYHRRSPSTPAFPPGPPSHQSHFRERYPNRAPPPADLPPFQAADTYLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYAGLTSPPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVRVMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQGRKKGTLDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL 395          
BLAST of EWM21170.1 vs. NCBI_GenBank
Match: gi|953496495|emb|CEG42095.1| (cleavage and polyadenylation specificity factor [Plasmopara halstedii])

HSP 1 Score: 223.787 bits (569), Expect = 4.257e-60
Identity = 137/346 (39.60%), Postives = 189/346 (54.62%), Query Frame = 0
Query:  151 YLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYA----GLTS--PPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAG----VRVMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQ-GRKKGT---------LDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL 476
            Y+ +GT  V   GED   +GRLL+Y +    Y     G TS   P L LV     R G  +A+AQLGP+++ A G  L VY F + E+L   AFYDA  Y+V+L V+K  +   D Y SVH LRW E      L L+ KDY P+  +    + F V    L +L  D   N+ ++Q+ P D+ESRGG RL+R +DFHL  ++S +   ++  V      + G      V + G+ EGGV ALVPV E+V+RRL+ LQ VMVN LP   A NPR FR+++     + GR  G          LD  +L++F  L    Q++LA  IGT+ E+V+ +LLEV   T T 
Sbjct: 1416 YVVIGTGCVGPHGEDESGRGRLLLYELDYAQYVNEEGGTTSGKLPKLRLVFIKEHRQGAISAVAQLGPYVLAAVGSKLIVYEFKS-EQLIGCAFYDAQMYIVTLNVIKDFIMYGDVYKSVHFLRWREMQ--RQLLLLAKDYEPLAVS---ATEFSVYEKRLALLAVDMDENMHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKQVDAVVSGTNRQEGAFPLCYVNILGTSEGGVSALVPVSERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAELRCGRSDGWSKKKWKKSFLDALVLFQFLQLDYVAQKELARCIGTTPEVVIHNLLEVQHATSTF 1755          
BLAST of EWM21170.1 vs. NCBI_GenBank
Match: gi|568035251|gb|ETM32901.1| (hypothetical protein L914_19793 [Phytophthora parasitica])

HSP 1 Score: 223.787 bits (569), Expect = 4.861e-60
Identity = 144/352 (40.91%), Postives = 189/352 (53.69%), Query Frame = 0
Query:  151 YLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYA----GLTS--PPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVR----------VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQ-GRKKGT---------LDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL 476
            YL VGT  V   GED   +GRLL+Y +    Y     G TS   P L LV     R G  + ++QLGP+++ A G  L VY F + E+L   AFYDA  Y+V+L VVK  V   D Y SVH LRW E      L L+ KDY P+  +    + F V    L +L  D   NL ++Q+ P D+ESRGG RL+R +DFHL  ++S +   R   V  PG+  +             V V G+ EGGVGALVPV E+V+RRL+ LQ VMVN LP   A NPR FR+++     + GR             LD  +L+RF  L    Q++LA  IGT+ E+V+ +LLEV   T T 
Sbjct: 1410 YLVVGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFKS-EQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKR---VDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNLLEVQHATSTF 1752          
BLAST of EWM21170.1 vs. NCBI_GenBank
Match: gi|568005367|gb|ETL79667.1| (hypothetical protein L917_19750 [Phytophthora parasitica])

HSP 1 Score: 223.787 bits (569), Expect = 4.954e-60
Identity = 144/352 (40.91%), Postives = 189/352 (53.69%), Query Frame = 0
Query:  151 YLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYA----GLTS--PPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVR----------VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQ-GRKKGT---------LDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL 476
            YL VGT  V   GED   +GRLL+Y +    Y     G TS   P L LV     R G  + ++QLGP+++ A G  L VY F + E+L   AFYDA  Y+V+L VVK  V   D Y SVH LRW E      L L+ KDY P+  +    + F V    L +L  D   NL ++Q+ P D+ESRGG RL+R +DFHL  ++S +   R   V  PG+  +             V V G+ EGGVGALVPV E+V+RRL+ LQ VMVN LP   A NPR FR+++     + GR             LD  +L+RF  L    Q++LA  IGT+ E+V+ +LLEV   T T 
Sbjct: 1410 YLVVGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFKS-EQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKR---VDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNLLEVQHATSTF 1752          
BLAST of EWM21170.1 vs. NCBI_GenBank
Match: gi|566009719|gb|ETI32630.1| (hypothetical protein F443_20594 [Phytophthora parasitica P1569])

HSP 1 Score: 223.402 bits (568), Expect = 6.049e-60
Identity = 143/352 (40.62%), Postives = 189/352 (53.69%), Query Frame = 0
Query:  151 YLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYA----GLTS--PPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVR----------VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQ-GRKKGT---------LDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL 476
            YL +GT  V   GED   +GRLL+Y +    Y     G TS   P L LV     R G  + ++QLGP+++ A G  L VY F + E+L   AFYDA  Y+V+L VVK  V   D Y SVH LRW E      L L+ KDY P+  +    + F V    L +L  D   NL ++Q+ P D+ESRGG RL+R +DFHL  ++S +   R   V  PG+  +             V V G+ EGGVGALVPV E+V+RRL+ LQ VMVN LP   A NPR FR+++     + GR             LD  +L+RF  L    Q++LA  IGT+ E+V+ +LLEV   T T 
Sbjct: 1410 YLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFKS-EQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKR---VDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNLLEVQHATSTF 1752          
BLAST of EWM21170.1 vs. NCBI_GenBank
Match: gi|970637856|gb|KUF81678.1| (cleavage and polyadenylation specificity factor subunit 1 [Phytophthora nicotianae])

HSP 1 Score: 222.631 bits (566), Expect = 6.733e-60
Identity = 143/352 (40.62%), Postives = 189/352 (53.69%), Query Frame = 0
Query:  151 YLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYA----GLTS--PPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVR----------VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQ-GRKKGT---------LDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL 476
            YL +GT  V   GED   +GRLL+Y +    Y     G TS   P L LV     R G  + ++QLGP+++ A G  L VY F + E+L   AFYDA  Y+V+L VVK  V   D Y SVH LRW E      L L+ KDY P+  +    + F V    L +L  D   NL ++Q+ P D+ESRGG RL+R +DFHL  ++S +   R   V  PG+  +             V V G+ EGGVGALVPV E+V+RRL+ LQ VMVN LP   A NPR FR+++     + GR             LD  +L+RF  L    Q++LA  IGT+ E+V+ +LLEV   T T 
Sbjct:  740 YLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFKS-EQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKR---VDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNLLEVQHATSTF 1082          
BLAST of EWM21170.1 vs. NCBI_GenBank
Match: gi|567975918|gb|ETL26449.1| (hypothetical protein L916_19887 [Phytophthora parasitica])

HSP 1 Score: 223.016 bits (567), Expect = 6.909e-60
Identity = 143/352 (40.62%), Postives = 189/352 (53.69%), Query Frame = 0
Query:  151 YLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYA----GLTS--PPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVR----------VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQ-GRKKGT---------LDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL 476
            YL +GT  V   GED   +GRLL+Y +    Y     G TS   P L LV     R G  + ++QLGP+++ A G  L VY F + E+L   AFYDA  Y+V+L VVK  V   D Y SVH LRW E      L L+ KDY P+  +    + F V    L +L  D   NL ++Q+ P D+ESRGG RL+R +DFHL  ++S +   R   V  PG+  +             V V G+ EGGVGALVPV E+V+RRL+ LQ VMVN LP   A NPR FR+++     + GR             LD  +L+RF  L    Q++LA  IGT+ E+V+ +LLEV   T T 
Sbjct: 1410 YLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFKS-EQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKR---VDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNLLEVQHATSTF 1752          
BLAST of EWM21170.1 vs. NCBI_GenBank
Match: gi|567947220|gb|ETK73008.1| (hypothetical protein L915_20009 [Phytophthora parasitica])

HSP 1 Score: 223.016 bits (567), Expect = 7.177e-60
Identity = 143/352 (40.62%), Postives = 189/352 (53.69%), Query Frame = 0
Query:  151 YLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYA----GLTS--PPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVR----------VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQ-GRKKGT---------LDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL 476
            YL +GT  V   GED   +GRLL+Y +    Y     G TS   P L LV     R G  + ++QLGP+++ A G  L VY F + E+L   AFYDA  Y+V+L VVK  V   D Y SVH LRW E      L L+ KDY P+  +    + F V    L +L  D   NL ++Q+ P D+ESRGG RL+R +DFHL  ++S +   R   V  PG+  +             V V G+ EGGVGALVPV E+V+RRL+ LQ VMVN LP   A NPR FR+++     + GR             LD  +L+RF  L    Q++LA  IGT+ E+V+ +LLEV   T T 
Sbjct: 1410 YLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFKS-EQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKR---VDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNLLEVQHATSTF 1752          
BLAST of EWM21170.1 vs. NCBI_GenBank
Match: gi|570967519|gb|ETP30638.1| (hypothetical protein F442_20407 [Phytophthora parasitica P10297])

HSP 1 Score: 223.016 bits (567), Expect = 7.315e-60
Identity = 143/352 (40.62%), Postives = 189/352 (53.69%), Query Frame = 0
Query:  151 YLAVGTCTVRAKGEDVPSKGRLLMYRISLDPYA----GLTS--PPTLTLVDQYSQRSGPPTAIAQLGPHIIIAAGPTLWVYAFSAREKLKPIAFYDADFYVVSLRVVKTLVAVTDAYHSVHLLRWHEHDPAHTLELMGKDYSPIVSAQPGGSHFVVDPPSLGMLVGDSRGNLQLLQYDPADVESRGGNRLVRRADFHLSHRLSFLQHTRMAEVPRPGAYRAGVR----------VMVFGSVEGGVGALVPVEEKVYRRLYALQAVMVNALPHVGAFNPRGFRLVEARGWAQ-GRKKGT---------LDGELLWRFAGLSVGKQEDLASAIGTSREMVLESLLEVDMMTWTL 476
            YL +GT  V   GED   +GRLL+Y +    Y     G TS   P L LV     R G  + ++QLGP+++ A G  L VY F + E+L   AFYDA  Y+V+L VVK  V   D Y SVH LRW E      L L+ KDY P+  +    + F V    L +L  D   NL ++Q+ P D+ESRGG RL+R +DFHL  ++S +   R   V  PG+  +             V V G+ EGGVGALVPV E+V+RRL+ LQ VMVN LP   A NPR FR+++     + GR             LD  +L+RF  L    Q++LA  IGT+ E+V+ +LLEV   T T 
Sbjct: 1410 YLVIGTGWVGPHGEDESGRGRLLLYELDYAQYVNEEGGATSGKLPKLRLVFIKEHRQGAISMVSQLGPYVLAAVGSKLIVYEFKS-EQLIGCAFYDAQMYIVTLNVVKDFVMYGDVYKSVHFLRWREMQ--RQLVLLAKDYEPLAVS---ATEFSVFEKKLALLAVDMDENLHVMQFAPQDIESRGGQRLLRVSDFHLGVQVSSMFRKR---VDAPGSVVSATNGRNAAPLSYYVNVMGTSEGGVGALVPVGERVFRRLFTLQNVMVNTLPQNCALNPREFRMLKTNAQRRCGRPDAWSKKKWKKSFLDAFVLFRFLQLDYVAQKELARCIGTTPEVVIHNLLEVQHATSTF 1752          
The following BLAST results are available for this feature:
BLAST of EWM21170.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101243|gb|EWM21170.1|0.000e+0100.00cleavage and polyadenylation specificity factor su... [more]
gi|553181483|ref|XP_005853574.1|0.000e+0100.00cleavage and polyadenylation specificity factor su... [more]
gi|953496495|emb|CEG42095.1|4.257e-6039.60cleavage and polyadenylation specificity factor [P... [more]
gi|568035251|gb|ETM32901.1|4.861e-6040.91hypothetical protein L914_19793 [Phytophthora para... [more]
gi|568005367|gb|ETL79667.1|4.954e-6040.91hypothetical protein L917_19750 [Phytophthora para... [more]
gi|566009719|gb|ETI32630.1|6.049e-6040.63hypothetical protein F443_20594 [Phytophthora para... [more]
gi|970637856|gb|KUF81678.1|6.733e-6040.63cleavage and polyadenylation specificity factor su... [more]
gi|567975918|gb|ETL26449.1|6.909e-6040.63hypothetical protein L916_19887 [Phytophthora para... [more]
gi|567947220|gb|ETK73008.1|7.177e-6040.63hypothetical protein L915_20009 [Phytophthora para... [more]
gi|570967519|gb|ETP30638.1|7.315e-6040.63hypothetical protein F442_20407 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9534rna9534Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications