rna9528, rna9528 (mRNA) Nannochloropsis gaditana

Overview
Namerna9528
Unique Namerna9528
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3383
Alignment locationKK037254.1:81143..82268 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100111g9.4971.mrna
Orig protein idgnl|cribi|Naga_100111g9.4971
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:81143..82268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100111g9gene9250Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9528rna9528-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21172.1cds9497Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9528 ID=rna9528|Name=rna9528|organism=Nannochloropsis gaditana|type=mRNA|length=3383bp
ATCGGAATTTTAACTCATTCTGGAATTTCTTTGTCTGCGGGCACGTCAGA
GAGCACGGGATAAGAAGAAGCGGGCATCCCTTCATCGCCACCGACGTCGT
CGTCAGCAGCTGAAGTAGCTGTGGAGTTGAGGCCTTCTTCCACCTTTCAT
GATTGCCACGACCTTCCACATCACCTTGGCCACTTGTGCGTCTCTTTTCC
TACTTTTTGCCTTCTACGACACGTCCACCGCCATGTTTCGCACGGGCTAT
CAACGAGGAACGACGGCATTTGCCTCGCCTCCTGCTTCTTCTTCGTGGAT
GCGTCGTCTCACCACCAAGGGCTCTGCGGCTACGGCAACGTCAGCCTTCA
CTTCCGTCGGCCGCCGTCCGTCTTGGGGACTCCTCTCTGCCGCCTTTCTG
GTCAGCTCGTCGCACCGTGTCGCCAGTGCCACGAATCCCTCCGCTGGCTT
TTGCAGCAGCTCTGCCAATAAGCACCCTCTTCCTCCTTTTATCCCCGCAC
AAACGTGCTTGGCAGCACACGCACCGGGAGGCGCCGACGGTGTTTCAGTT
GCACCGGCTCCCACTTCCGCGTCCCTGGAGGCCGTTTCTTCTCCCACTGA
GAAAAAAAAGCTCCAGCCCAAGTACCGATCCTCCTACCGACAGCCGGATT
ATTGGATCCGGCATACCGACCTCCTCTTCCAAATCGTGCCCGATCCCGAC
CCCGAGGCCCCTGCTGGGGCGACGGTGACGTATGTGACGTCCACGCTGAC
CGTGGAGAGGAACGCCGACGGCGGTCCGTCCCCAGGCATTCCGAACTTGG
AACTCGATGGGGAGGAGCTGACCCTGATGGAAATCACGGTGAACGGGCAG
CCGCTGCCATGGGACGGGTCCGCCTTTTTGTTGACAGCGGAGTCAGATTT
GTTGGTGCTAGGCAAGACCATCGAGGCTGCGTCGGCGGGGAAAGGGGACT
TCACCCTGCAGACGCGGGTGCTGATCCGGCCCGAATCCAATTTCGAGCTG
TCAGGCTTTTACAAGTCGGGGAGCGCCTACTGTTCGCAGTGCGAGGCGGA
GGGTTTCCGGCGGATCACGTACTACCTGGACAGGCCGGACGTGATGGCCC
GCTTCAAAGTCCGGATCGAAGCCGAGAAAGCGAAGCTGCCCCTCCTCCTC
TCGAACGGGAACAAGATGGCTACGGGGGAGTTGGACGGCGGGAGGCATTT
TGCCGAGTGGGAAGATCCCTTCCCCAAGCCCAGCTACCTGTTTGCGGTCG
TGGCGGGGGACTTGGGCAGCATTGTCGACAGCTACAAGACCATGTCGGGG
AGGGACGTACGTCTGGAGATTTTCAGCGAGCACGAGAACGTGGATAAGCT
GGAGCACGCCATGACCAGCCTGAAGAAGAGCATGCGGTGGGATGAGGATG
TTTACGGCCTCGAGTACGATTTGGACGTGTACAACATCGTGGCGGTCAAC
GATTTCAACATGGGGGCAATGGAGAACAAGGGCCTCAACGTCTTCAACAC
GGCCTTTGTCCTGGCCAAGCCCGAGACGGCCACCGACACGGACTACGAGC
GCATCGAGGGCGTGATCGCGCACGAATACTTCCACAATTGGTCGGGGAAC
AGGGTCACCTGTCAGGATTGGTTCCAGCTCACCTTGAAGGAGGGCCTCAC
GGTCTTCCGAGACCAGCAGTTCAGCGCCGACATGGGTTCCGCGGCCGTAA
AACGGATCGAGGACGTCCGGGTCTTGCGCGCCCGCCAATTCGCCGAAGAC
TCGGGGCCCCGGGCCCATGCGATTCGCCCGGAGTCCTACATGAAAATGGA
CAATTTCTACACCTCCACCGTGTACGAAAAGGGGGCGGAGGTGATCCGCA
TGTACCACACCCTGTTAGGCGCGGCCGGATTTCGGAAAGGGATGGACCTC
TACTTTGCCCGCCACGACGGCTCGGCTGTGACCTGCGATGATTTCCGTGC
TGCCATGGCCGATGCGAACGGCAAGGATTTCTCACAATTTGAACGCTGGT
ACTTGCAGGCTGGAACGCCGGTGGTAACTGCGAAGGGCGCCTACGATGCG
GCCCAGAAACGCTACAGCCTCACGCTTTCTCAGCACACGGCGGGGACGGT
TGGCCAGCCCAGTAAGCTCCCCTTTCACATTCCTGTGCGGGTGGGGTTGC
TGGGAAAAGACGGTCGAGAGCTAGTGCCCTCGACCGTCCTGGAATTGAAA
GAGGCCTCTCAAACGTTTGAATTTGAGAACGTGGAGGGAGGCACGCCCGT
CCCATCCTTGCTCCGAGGTTTCAGTGCCCCTGTGCGTCTCAAAGTGGAGC
AGAGCGACGAAGACCTGGCCTTCCTGATGGCACATGACACGGACTCTTTC
AACCGATGGGAAGCCTCCCAGAAGTTGGCGAGTCAAGCGATATTGGCGGC
GACAGAGGCATTGGCGGGGGGCGGAACCCCTGCCCCCCTGGCCCCCACCA
CGGTGGACGCGTTCCGAGCCGTGCTCAAGGCGGGTTTGGACGACACGGGC
GTGGACAGGTCGCTTCTGGCTTACGCACTGTCATTGCCGGATGAGCTTAC
CTTGTTGGGTGAGATGGACGTGATGCGACCGGTGGCTTTGCACGAAGGGC
GCGAGCACGTGAAGAAAAGCTTGGCTGCGGCATTGAAGCCGGAGTTTATG
GACGTCTACCAGGCCCTGGACAAGGACGTGCCATACCTGGTCACCCCGCA
GGAGATCGGCCGTCGTCGGATGAAGAACGTTTGTTTGTCGTACCTGTGCA
CAGAAAAGGATGCCGGAGCCGTGGCGTTGGCAGCCTCGGCATTTCAACGC
GCCACATGCATGACGGATAGCATTGCCGCCTTGGCCTGCCTGGCCTCGTT
GCCGGGGCCCGAGAAAGACGAGGCATTGGAGATCTTCTACACCAATGCGA
AAGGAGACCCCTTGGTGTTGAACAAATGGTTCTCCATTCAGGCCCTGGCC
GACCTTCCCGACACCATCGACCGGGTCCACGCCCTCACGCGACACCCTGA
CTTCAGCATGAAGAACCCGAACCGTTTCCGGGCTTTGATTGGGGCATTTG
CCAATTCCAACCTGGCCCGTTTCCATGCTGAGGATGGACGTGGCTACGTC
CTTGTTGCGGACATGGTCTTGGCCGTCGACAAATTAAATCCTCAGGTGGC
GGCGCGTTTGGCGGGTGCATTTTCCTTGTGGCGAAAATTCGAGAATACCC
GTCGAAACATGATGAAATCTCAATTGGATAGGTTGATGGCCGTGGGAGAC
GGCTTGTCAAGGGACACCTTTGAAATTGTCAGCCAAAGTTTGCTTTCAGC
TTAAAGGGATGGTGTAAGGGATCGCTTTAATAAATTTATCATGTTTCTGG
TAAAGAAGCGAAGAAATAGCGTGGTGCGGTATA
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protein sequence of rna9528

>rna9528-protein ID=rna9528-protein|Name=rna9528|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MAVRPALTSYHTPSNRGFKFIGKAQMGVVWPLLGSAGPTEFLVRSGVLQI
LFTTILGWAMLLPHQAWGPSSSLATRLRSRDVAMAHVDWIMLALVQFAAA
YILTLKAVPSAHVVARCLAFYGWVGPSVYMARAWGINGFRLDGKRMWDTV
MGTLGFTGILAFTYGWAQIVRVWWM
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mRNA from alignment at KK037254.1:81143..82268+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9528 ID=rna9528|Name=rna9528|organism=Nannochloropsis gaditana|type=mRNA|length=1126bp|location=Sequence derived from alignment at KK037254.1:81143..82268+ (Nannochloropsis gaditana)
CAAAGAAATTCCAGAATGAGTTAAAATTCCGATGATTGTCTTCGAGTATT
CTACGAGGTGGATTTTTTGGTCTGAAAACACGACAGACAGTCGCTGACGT
CGCCGACAAAGACCCCTCTTAATGAAAGGGGCTTGCAGCCATGGCCGTAC
GCCCCGCGCTTACGAGCTATCACACACCTAGTAACAGGGGCTTTAAATTT
ATCGGGAAGGCACAAATGGGAGTGGTGTGGCCGCTTCTGGGGTCTGCGGG
GCCGACTGAGTTCCTTGTCCGAAGCGGCGTCCTGCAGATCCTTTTCACAA
CCATTCTCGGCTGGGCAATGTTACTACCTCATCAAGCATGGGGACCAAGT
TCCTCCCTCGCGACGCGCTTGCGGTCGCGAGACGTTGCAATGGCACACGT
TGACTGGATTATGCTCGCGCTGGTACAATTCGCGGCGGCCTACATTCTCA
CCTTAAAGGCGGTTCCGAGTGCTCATGTCGTGGCCCGGTGCTTGGCATTC
TATGGATGGGTAGGGCCCTCCGTCTATATGGCACGAGCATGGGGCATTAA
TGGTTTCAGGTTGGATGGAAAACGCATGTGGGATACCGTAATGGGTACTT
TGGGGTTCACGGGGATTCTCGCCTTTACTTACGGATGGGCACAAATTGTT
CGGGTGTGGTGGATGTGAGTGGCCGAGGAAGTATTGTTGCATGACATGCT
TGATTGAGTACATCTTATGTGAACTGATGTATCTTTTGTAACGAGGAAGT
GTGAAGGCTTTAATGGCTAGTTAAATGTCCAGAAAGTATGGCAAAGTCAG
CTCAATTACGCCGATGTCAAGCAACCGTCTTTTACGGGAGGAAGTTATGT
TTAAAGCCTTCATGCTCATTCGTGGTAAAATTCCATTATCTTGAAATCCG
AGGCACACGAGGCCTGGAAGTCAGAGAAGTGGGAGAAGTCTTCCCGCTCA
AGATCGTTCGGGCCTCGAATTGACTTTGACACGAGGCAACCCAGCTCTTA
TTTGTGCTCAGCACATATGTAAATAGGATGTAATTGTAGAAATTTAGCAT
TTGCATGGATCTAAGATTGGCGACGACATAGGCATAATTTCCCTCTCAAC
GAAAATAAGTATCAGTTTGACAAGGT
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Coding sequence (CDS) from alignment at KK037254.1:81143..82268+

>rna9528 ID=rna9528|Name=rna9528|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at KK037254.1:81143..82268+ (Nannochloropsis gaditana)
ATGGCCGTACGCCCCGCGCTTACGAGCTATCACACACCTAGTAACAGGGG
CTTTAAATTTATCGGGAAGGCACAAATGGGAGTGGTGTGGCCGCTTCTGG
GGTCTGCGGGGCCGACTGAGTTCCTTGTCCGAAGCGGCGTCCTGCAGATC
CTTTTCACAACCATTCTCGGCTGGGCAATGTTACTACCTCATCAAGCATG
GGGACCAAGTTCCTCCCTCGCGACGCGCTTGCGGTCGCGAGACGTTGCAA
TGGCACACGTTGACTGGATTATGCTCGCGCTGGTACAATTCGCGGCGGCC
TACATTCTCACCTTAAAGGCGGTTCCGAGTGCTCATGTCGTGGCCCGGTG
CTTGGCATTCTATGGATGGGTAGGGCCCTCCGTCTATATGGCACGAGCAT
GGGGCATTAATGGTTTCAGGTTGGATGGAAAACGCATGTGGGATACCGTA
ATGGGTACTTTGGGGTTCACGGGGATTCTCGCCTTTACTTACGGATGGGC
ACAAATTGTTCGGGTGTGGTGGATGTGA
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Synonyms
Publications