EWM21172.1, cds9497 (CDS) Nannochloropsis gaditana

Overview
NameEWM21172.1
Unique Namecds9497
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:81283..81810 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21172.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100111g9.4971.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:81283..81810 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM21172.1 vs. NCBI_GenBank
Match: gi|585101245|gb|EWM21172.1| (hypothetical protein Naga_100111g9 [Nannochloropsis gaditana])

HSP 1 Score: 352.058 bits (902), Expect = 1.056e-122
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query:    1 MAVRPALTSYHTPSNRGFKFIGKAQMGVVWPLLGSAGPTEFLVRSGVLQILFTTILGWAMLLPHQAWGPSSSLATRLRSRDVAMAHVDWIMLALVQFAAAYILTLKAVPSAHVVARCLAFYGWVGPSVYMARAWGINGFRLDGKRMWDTVMGTLGFTGILAFTYGWAQIVRVWWM 175
            MAVRPALTSYHTPSNRGFKFIGKAQMGVVWPLLGSAGPTEFLVRSGVLQILFTTILGWAMLLPHQAWGPSSSLATRLRSRDVAMAHVDWIMLALVQFAAAYILTLKAVPSAHVVARCLAFYGWVGPSVYMARAWGINGFRLDGKRMWDTVMGTLGFTGILAFTYGWAQIVRVWWM
Sbjct:    1 MAVRPALTSYHTPSNRGFKFIGKAQMGVVWPLLGSAGPTEFLVRSGVLQILFTTILGWAMLLPHQAWGPSSSLATRLRSRDVAMAHVDWIMLALVQFAAAYILTLKAVPSAHVVARCLAFYGWVGPSVYMARAWGINGFRLDGKRMWDTVMGTLGFTGILAFTYGWAQIVRVWWM 175          
BLAST of EWM21172.1 vs. NCBI_GenBank
Match: gi|913453589|ref|WP_050432998.1| (hypothetical protein [Chondromyces crocatus] >gi|908358610|gb|AKT41185.1| uncharacterized protein CMC5_053460 [Chondromyces crocatus])

HSP 1 Score: 79.337 bits (194), Expect = 1.179e-15
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 0
Query:   36 AGPTEFLVRSGVLQILFTTILGWAMLLPHQAWGPSSSLATRLRSRDVAMAHVDWIMLALVQFAAAYILTLKAVPSAHVVARCLAFYGWVGPSVYMARAWGINGFRLDGKRMWDTVMGTLGFTGILAFTYGWA 167
            + P   L  +G LQ+L +++LG  ML+P Q WG    LA R+  + +  AH+DW+MLA +Q+ AA+ +   +   +  VA  L F GW  P+ Y+ R  GIN F L G+          G +  LA    WA
Sbjct:    7 SDPVRLLAANGALQVLVSSLLGVYMLIPMQPWG--KRLAPRVNMKSLLAAHLDWLMLAFMQWGAAFAMNTWSSTRSLAVALLLVFGGWTNPTPYLLRGAGINAFVLAGRPAQIVAASVAGLSS-LAIIIAWA 135          
BLAST of EWM21172.1 vs. NCBI_GenBank
Match: gi|1082762959|gb|OGA81084.1| (hypothetical protein A2711_08105 [Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240])

HSP 1 Score: 69.707 bits (169), Expect = 4.978e-12
Identity = 43/133 (32.33%), Postives = 67/133 (50.38%), Query Frame = 0
Query:   38 PTEFLVRSGVLQILFTTILGWAMLLPHQAWGPSSSLATRLRSRDVAMAHVDWIMLALVQFAAAYILTLKAVPSAHVVARCLAFYGWVGPSVYMARAWGINGFRLDGKRMWDTVMGTLGFTGILAFTYGWAQIV 170
            P   L  +  LQ+L +++LG  ML+P Q WG    LA R+  + +   H+DW MLA +Q+ AA+++         V+A  L F GW     Y+ R +G+N F + G  +     G  G + +LA    W  I+
Sbjct:    5 PVFALSCNAALQVLVSSLLGTFMLIPLQPWG--KKLAARVNMKSLLATHMDWYMLAFMQWGAAFMMDRWDAARDPVLALLLMFGGWTNALPYLLRGFGVNAFVMGGNTLQRVSAGIAGLS-VLAILVAWTAII 134          
BLAST of EWM21172.1 vs. NCBI_GenBank
Match: gi|1127356082|gb|APR77485.1| (Hypothetical protein A7982_02832 [Minicystis rosea])

HSP 1 Score: 69.3218 bits (168), Expect = 7.365e-12
Identity = 49/130 (37.69%), Postives = 63/130 (48.46%), Query Frame = 0
Query:   41 FLVRSGVLQILFTTILGWAMLLPHQAWGPSSSLATRLRSRDVAMAHVDWIMLALVQFAAAYILTLKAVPSAHVVARCLAFYGWVGPSVYMARAWGINGFRLDGKRMWDTVMGTLGFTGILAFTYGWAQIV 170
             LV + V Q+LF+ + GWAML+P Q WG        L  +    AH+DWIML L Q   AY   L       +V   L F GWV P  Y+ RA G + F L G  +       L  T  LA T G++ I+
Sbjct:    4 LLVTNAVAQVLFSCLFGWAMLVPMQPWG--QRWRNILPVKAALAAHLDWIMLGLAQGLVAYASGLVEPRHPTLVTALLVFGGWVNPVPYLLRAKGTDAFVLAGG-LRQRAAALLAGTSSLALTIGFSLIL 130          
BLAST of EWM21172.1 vs. NCBI_GenBank
Match: gi|947710574|ref|WP_056372926.1| (MULTISPECIES: hypothetical protein [Sphingopyxis] >gi|945920543|gb|KQZ73801.1| hypothetical protein ASD73_13460 [Sphingopyxis sp. Root154] >gi|946155970|gb|KRC07942.1| hypothetical protein ASE06_15805 [Sphingopyxis sp. Root214])

HSP 1 Score: 60.8474 bits (146), Expect = 1.027e-8
Identity = 42/123 (34.15%), Postives = 63/123 (51.22%), Query Frame = 0
Query:   40 EFLVRSGVLQILFTTILGWAMLLPHQAWGPSSSLATRLRSRDVAMAHVDWIMLALVQFAAAYILTLKAVPSAHVVARCLAFYGWVGPSVYMARAWGINGFRLDGKRMWDT--VMGTLGFTGIL 160
            +FL  SG + I F+  +G  ML P +     +  A  +  + +  AH+DWIML L+Q  A  ++ L A+  A  V   +AF  W+ P  Y+ RA+GIN F   G  +  +   +G L  T IL
Sbjct:    8 KFLALSGSISIFFSAWIGVIMLFPRRP-NRDAGEAGGVNFKQIGAAHIDWIMLGLMQGLAGLLILLFAITPAPYVLWLMAFGAWLNPLPYVFRAFGINAFVFAGGPVQRSAATLGGLSSTAIL 129          
BLAST of EWM21172.1 vs. NCBI_GenBank
Match: gi|823656424|ref|WP_047092006.1| (hypothetical protein [Erythrobacter marinus] >gi|823479336|gb|KLI64148.1| hypothetical protein AAV99_00240 [Erythrobacter marinus])

HSP 1 Score: 59.6918 bits (143), Expect = 3.866e-8
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 0
Query:   40 EFLVRSGVLQILFTTILGWAMLLPHQAWGPSSSLATRLRSRDVAMAHVDWIMLALVQFAAAYILTLKAVPSAHVVARCLAFYGWVGPSVYMARAWGINGFRLDGKRMWDTVMGTLGFTGILAFTYGW 166
            ++L+ SG L I + ++LG  M++PH      S     +  R +  AH+DWIMLA +Q  AA +L L  + +   +   + F GW+    Y  RA+GIN F   G+ +  T    LG   +   T  W
Sbjct:   12 QWLMFSGALAIFWASLLGLFMMIPHLQMSTLSKATRSVNFRLLLSAHLDWIMLAFMQGLAAGLLVLFDLSAPVWLVAGIIFGGWMNAVPYFLRAFGINAFVYGGETIQKTAF-ILGGISVFILTIAW 137          
The following BLAST results are available for this feature:
BLAST of EWM21172.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585101245|gb|EWM21172.1|1.056e-122100.00hypothetical protein Naga_100111g9 [Nannochloropsi... [more]
gi|913453589|ref|WP_050432998.1|1.179e-1535.61hypothetical protein [Chondromyces crocatus] >gi|9... [more]
gi|1082762959|gb|OGA81084.1|4.978e-1232.33hypothetical protein A2711_08105 [Burkholderiales ... [more]
gi|1127356082|gb|APR77485.1|7.365e-1237.69Hypothetical protein A7982_02832 [Minicystis rosea... [more]
gi|947710574|ref|WP_056372926.1|1.027e-834.15MULTISPECIES: hypothetical protein [Sphingopyxis] ... [more]
gi|823656424|ref|WP_047092006.1|3.866e-832.28hypothetical protein [Erythrobacter marinus] >gi|8... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9528rna9528Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications