rna9526, rna9526 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9526
Unique Name	rna9526
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2668
Alignment location	KK037254.1:75940..77272 -

Link to JBrowse

Properties


Property Name	Value
Product	plastid lipid associated protein
Orig transcript id	gnl\|cribi\|Naga_100111g7.4973.mrna
Orig protein id	gnl\|cribi\|Naga_100111g7.4973
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:75940..77272 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100111g7	gene9248	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9526	rna9526-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21174.1	cds9495	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:75940..77272-
coding sequence from alignment at KK037254.1:75940..77272-

mRNA sequence

>rna9526 ID=rna9526|Name=rna9526|organism=Nannochloropsis gaditana|type=mRNA|length=2668bp
TGGATGGTCTCTCGGTGGCTGTACGGATAGCCGACGCTACTCAACATGAC
AAAGATTATGTCACATCTCGTGGCCAATGACTGCATTTAAAAGAGTTGAT
ACCGACGCGTGTAAAGAGTAGACAATCTTATTCTCTTCGGCTTTTTCCGA
GGGGAAACCACGGCAAGATTGATCTAACAGACGTACATGGCCCAACCTAA
GACGTAGAAAGATCAAGGAGGTTCATTCTTATTTCCCTATTCTCAGGAGG
ACCAGGACGGAGGGAGGTTGTCTGCGAGACTAGCAGATGATGAAAGTGTC
GGGAATTTTGTCTCAAAGTCTTGCGTTCTGCGTACTGTGTGGCCAAGCCG
CGGCAACAGCTTGGAGCAGGCGTCGACATCAACTACTACAACATCACCAA
CATGCCTTCATCTTCGGCTTAATGGGCACATTTCCTCGAGCCGGCCGGTA
TGCGTCCAATTTTCTCGTCGAACAGCGCTCCCGCTGCTTCTCTGCCACTT
CCTCGTTGTCCTCCTCTACATTATCTGCGTTCCCGTCGTCTAACTCCTCT
TACTCGTCCTCTTCATCTTCAAACCCTGCTTCGTCTCCTCACCCCTTCTT
ATCTCCTCCGCGTCCTCTCTCATCGTCTTCATCTCAACACGACTCCTTCA
TCCCGTCCTTGTTGGACAAAAGCCTGTTCGAGAGCGAGTGCCACGTGCAA
GCCTTGCGCCTTCCTGCTGCCTATTGCCACCACGCTATTCAATCGCTATC
TCCGTTCCTCTTCCGCTCCACAACGCAGCGGAGTGTAATGCTGCCGGGAA
GATGTACGCTGCCGCTCGACCCTCCGCTTAAGCCAGACGAACGTCTGCTC
CTCTTTTGCCCTCCAATGTTGGACGATGACCAAGAGGACGGGGACGCACG
TGCTAGGGGTTGTGCGGAGCCGACTCGGCAGCACCAGACGCATACGTCAC
ACGGGTCCGAAACGTCAACTGGATGCCAGGAGCTTGTCGACAACCTCCTC
CGCACCATTCCCTTCGCTTCCTTGCTCCCCCCTCCCGGACTCCCTGTCCG
ACTCACCTATGAGGACCTCTCCCTTCACCAAGCCCTCCGCCGGCTCCTGC
CGCCCTCCCTGGACGTTCCTGCCTCTTTCGAGACCGTGGGCCACCTCGCC
CACTTGAATTTACGGGCTGAAGTCCTTCCGTACAAGCACCTGATAGCCCA
GGTCGTGCTGGACAAGAACCGGAAGCGGCTCCAGACGGTCGTGAACAAGG
TCGGGGAGATCGGGAGCACGTTCCGGGTCCTGCCCTTGGAGGTGATAGGA
GGGAAGAAGGACACCTGCGTACGGGTCAAGGAGAGCGGTGCCCGGTTCGA
GTTTGACTACGCGCAGGTGTACTGGAACAGCCGGTTGCAGGGGGAGCATG
CCCGGATAATCGACCTGGTCGTCTCGGAAGGGAGGGAGGGAGGGAGGGCG
GGGGCCGGGGTTGAAAGGGTGGACGACACTGGTGACTCCCCCCCCGTGGT
GGTGTGGGATGTGTTTGCCGGCGTGGGGCCTTTCGCCCTGCCTTTGGCCG
TGCGCGGATGTCAGGTCTACGCGAATGATCTGAACCCGGACAGTTACCGG
TATCTCTGCCATAACGCCGCTTTGAATAAGGTGCCTCTCTCCTTTCCTTC
CGTCCCGCCCTCCTCCCCTTCCTCACTCCCGGCCGGCCTTCCTGATGCCA
AGGGATCTTCCGCAAGGGCCGCCGCGACTCCCTCTTCCTCCGCCCTCCCA
GCCCCCCCCCCGATCCTCCTCCCCCAGGCCCCCTCACCTCGTTCCGTACA
ATCAGGACGGGAGGGACTTCCTACGCGCCCTCGCCCGGGAGAAGAAACCC
GCTAGCCACATTTTGATGAACCTCCCCGCCCTGGCATTGAGCTTTTTGGA
CGTCTTTTCCGAGGAGGAGGGGAGGGAGGGAGGAAAAGAGGGGAGGGAAG
GACCGAGGGTGGCGCCAGGAGGAGGAGGGTCGAAAAAACGAGACGGGGAA
TCACTCTTGTTCGGATACTTGGGAGGGAAAGGGGTGGTAGTGCACGTCTA
TGCTTTCAGTAAAGCCGAGGATGGCGCGCGAGACGTGGTGGAACGCGCCG
CGTCGGCCTTGGGAGTGGAGGTGGAACGGCTGGAGGGAGGGAAAGAGGCA
GGGCGCGTGCTTGTGCGCCACGTCAGGGACGTGGCGCCGAACAAGCAGAT
GCTTTGCCTTTCGTTTCCCTTGGATTTAGTCCTCTTGGGCTCGAATGGAG
GGGAAGAGTACGAAGGAAAAACGGGGTCAAACAAGGCCCGGGGCCCCCCG
GGAGGAAGGCAAGGGGCGAAGGGCTGAGTGTGCCCTGTCCTCTCCCACCA
AACACCTCGAATGCCAACGAGACCATAATCGTGTAAAAATCAATGTAAAT
GTAAAATGCTTTCTGACAGGTGTGCGTCTCCTTACTCAGCCCTCGGTATT
CCCACATTCATGCCCAAAGTTACAACCCTTGCACTGACAGAGACAAAAGA
CCTCTTCTAGCAACCAAACCGAGGCACACGGCTTGCCGCTTTCTGCCTTC
TCGATTACGATTCCTCAACTTTCTCCAGCACAAATATAGTCCCTTTGTTG
CCCCGGGAGACCCGGAGCCGCCCCGACAAGTAGGTGACCTCAAGCCAGCC
TTTCACCTCGTCGTTGAG

protein sequence of rna9526

>rna9526-protein ID=rna9526-protein|Name=rna9526|organism=Nannochloropsis gaditana|type=polypeptide|length=302bp
MLLIKYRTHTGAMTLSRCLWMLSVLVLIAFSALSSAFYLSSRPAFNVADG
KPPTPTSLPAALASWPLTLGASRKSPRVLLNTENSLLQAIQGLDRREVQN
SVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQN
TFVGNKAFAVYQEIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTP
SRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDL
GLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEKVE
ES

mRNA from alignment at KK037254.1:75940..77272-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9526 ID=rna9526|Name=rna9526|organism=Nannochloropsis gaditana|type=mRNA|length=1333bp|location=Sequence derived from alignment at KK037254.1:75940..77272- (Nannochloropsis gaditana)
GGATATGCGTCACCACCACGAACATCTCTCACTGAAACATGTTGTTGATT
AAGTATCGCACGCACACAGGGGCAATGACCCTCTCCAGGTGTCTTTGGAT
GCTTTCAGTGCTTGTCCTCATAGCCTTCAGTGCTCTTTCGTCAGCTTTTT
ATCTATCTTCGCGGCCTGCTTTCAATGTCGCAGACGGAAAACCTCCTACA
CCCACCTCCTTACCTGCAGCACTTGCGTCCTGGCCTTTGACCCTTGGTGC
CTCCCGGAAAAGTCCTCGTGTCCTCCTAAACACGGAAAATTCTCTTCTGC
AGGCGATACAAGGTCTGGATCGGAGAGAGGTTCAAAACTCTGTACAGGCG
CAGGGGCGCGTGAGCGGTCTCATCAAGGAACTGGAAGCTGCGAAAGGGAT
CCCGAAGGCCACCACAACCCGGGAAATCAATGGAAAATGGCGCTTGCTTT
ACACCTCAAGCGACAGTACTGCCTCTCCCATTCAGAACACTTTTGTGGGC
AATAAGGCCTTCGCGGTCTACCAAGAGATAGACATCGCGCCTTCAGCATC
CTCCTCTGCGCCGGGGACCGTCACCAACATCGTCGACTTTGGTGGTGCCA
TCGGGGCCCTTAATGTTCAAGCATTAGCCAGCACACCATCACGACCAATA
CCCAATTTCGTCCCTCGACTAGGGGACGGGAGGTTTTTCGGCCTGAATAT
CTTGGGCATCAGCAAAACCGAGGTCCCTCGGGACAGCGACCCGGACGATC
GTGAGTGAGGGTGCGGGGGGGACTGGAAGACAAGAGAAGGCACGACACGC
ATAAGGCCTTCACAGCGTTGAGCAAGCGAGAAGAAGGCAGGCAATGGCCG
CCTCAGGCTGCGGCACATGTCGATCGTTCTCCTTTTCCCTCTCTAGGTCT
TTTCTCTCTCGCCCCCCTGTCCCAACGCCTCTCTCTCTTTGCTCCCCCCC
TCCCTTTCCTTTCGATAGGCATCGACTTTAAGTTCGACAATGCTGGCTTT
GACCTGGGCTTACTGCCCTTTCGCATCCCCTACCCCGTGCCTTTCCGCCT
GCTCAACGACGAGGTGAAAGGCTGGCTTGAGGTCACCTACTTGTCGGGGC
GGCTCCGGGTCTCCCGGGGCAACAAAGGGACTATATTTGTGCTGGAGAAA
GTTGAGGAATCGTAATCGAGAAGGCAGAAAGCGGCAAGCCGTGTGCCTCG
GTTTGGTTGCTAGAAGAGGTCTTTTGTCTCTGTCAGTGCAAGGGTTGTAA
CTTTGGGCATGAATGTGGGAATACCGAGGGCTGAGTAAGGAGACGCACAC
CTGTCAGAAAGCATTTTACATTTACATTGATTT

Coding sequence (CDS) from alignment at KK037254.1:75940..77272-

>rna9526 ID=rna9526|Name=rna9526|organism=Nannochloropsis gaditana|type=CDS|length=1818bp|location=Sequence derived from alignment at KK037254.1:75940..77272- (Nannochloropsis gaditana)
GCATCGACTTTAAGTTCGACAATGCTGGCTTTGACCTGGGCTTACTGCCC
TTTCGCATCCCCTACCCCGTGCCTTTCCGCCTGCTCAACGACGAGGTGAA
AGGCTGGCTTGAGGTCACCTACTTGTCGGGGCGGCTCCGGGTCTCCCGGG
GCAACAAAGGGACTATATTTGTGCTGGAGAAAGTTGAGGAATCGTAAATG
TTGTTGATTAAGTATCGCACGCACACAGGGGCAATGACCCTCTCCAGGTG
TCTTTGGATGCTTTCAGTGCTTGTCCTCATAGCCTTCAGTGCTCTTTCGT
CAGCTTTTTATCTATCTTCGCGGCCTGCTTTCAATGTCGCAGACGGAAAA
CCTCCTACACCCACCTCCTTACCTGCAGCACTTGCGTCCTGGCCTTTGAC
CCTTGGTGCCTCCCGGAAAAGTCCTCGTGTCCTCCTAAACACGGAAAATT
CTCTTCTGCAGGCGATACAAGGTCTGGATCGGAGAGAGGTTCAAAACTCT
GTACAGGCGCAGGGGCGCGTGAGCGGTCTCATCAAGGAACTGGAAGCTGC
GAAAGGGATCCCGAAGGCCACCACAACCCGGGAAATCAATGGAAAATGGC
GCTTGCTTTACACCTCAAGCGACAGTACTGCCTCTCCCATTCAGAACACT
TTTGTGGGCAATAAGGCCTTCGCGGTCTACCAAGAGATAGACATCGCGCC
TTCAGCATCCTCCTCTGCGCCGGGGACCGTCACCAACATCGTCGACTTTG
GTGGTGCCATCGGGGCCCTTAATGTTCAAGCATTAGCCAGCACACCATCA
CGACCAATACCCAATTTCGTCCCTCGACTAGGGGACGGGAGGTTTTTCGG
CCTGAATATCTTGGGCATCAGCAAAACCGAGGTCCCTCGGGACAGCGACC
CGGACGATCGCATCGACTTTAAGTTCGACAATGCTGGCTTTGACCTGGGC
TTACTGCCCTTTCGCATCCCCTACCCCGTGCCTTTCCGCCTGCTCAACGA
CGAGGTGAAAGGCTGGCTTGAGGTCACCTACTTGTCGGGGCGGCTCCGGG
TCTCCCGGGGCAACAAAGGGACTATATTTGTGCTGGAGAAAGTTGAGGAA
TCGTAAATGTTGTTGATTAAGTATCGCACGCACACAGGGGCAATGACCCT
CTCCAGGTGTCTTTGGATGCTTTCAGTGCTTGTCCTCATAGCCTTCAGTG
CTCTTTCGTCAGCTTTTTATCTATCTTCGCGGCCTGCTTTCAATGTCGCA
GACGGAAAACCTCCTACACCCACCTCCTTACCTGCAGCACTTGCGTCCTG
GCCTTTGACCCTTGGTGCCTCCCGGAAAAGTCCTCGTGTCCTCCTAAACA
CGGAAAATTCTCTTCTGCAGGCGATACAAGGTCTGGATCGGAGAGAGGTT
CAAAACTCTGTACAGGCGCAGGGGCGCGTGAGCGGTCTCATCAAGGAACT
GGAAGCTGCGAAAGGGATCCCGAAGGCCACCACAACCCGGGAAATCAATG
GAAAATGGCGCTTGCTTTACACCTCAAGCGACAGTACTGCCTCTCCCATT
CAGAACACTTTTGTGGGCAATAAGGCCTTCGCGGTCTACCAAGAGATAGA
CATCGCGCCTTCAGCATCCTCCTCTGCGCCGGGGACCGTCACCAACATCG
TCGACTTTGGTGGTGCCATCGGGGCCCTTAATGTTCAAGCATTAGCCAGC
ACACCATCACGACCAATACCCAATTTCGTCCCTCGACTAGGGGACGGGAG
GTTTTTCGGCCTGAATATCTTGGGCATCAGCAAAACCGAGGTCCCTCGGG
ACAGCGACCCGGACGATC

Synonyms

Publications