EWM21174.1, cds9495 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21174.1 vs. NCBI_GenBank
Match: gi|585101247|gb|EWM21174.1| (plastid lipid associated protein [Nannochloropsis gaditana]) HSP 1 Score: 608.216 bits (1567), Expect = 0.000e+0 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
Query: 1 MLLIKYRTHTGAMTLSRCLWMLSVLVLIAFSALSSAFYLSSRPAFNVADGKPPTPTSLPAALASWPLTLGASRKSPRVLLNTENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEKVEES 302
MLLIKYRTHTGAMTLSRCLWMLSVLVLIAFSALSSAFYLSSRPAFNVADGKPPTPTSLPAALASWPLTLGASRKSPRVLLNTENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEKVEES
Sbjct: 1 MLLIKYRTHTGAMTLSRCLWMLSVLVLIAFSALSSAFYLSSRPAFNVADGKPPTPTSLPAALASWPLTLGASRKSPRVLLNTENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEKVEES 302
BLAST of EWM21174.1 vs. NCBI_GenBank
Match: gi|553192698|ref|XP_005855626.1| (aminopeptidase N [Nannochloropsis gaditana CCMP526] >gi|422293432|gb|EKU20732.1| aminopeptidase N [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 436.417 bits (1121), Expect = 1.618e-140 Identity = 228/298 (76.51%), Postives = 237/298 (79.53%), Query Frame = 0
Query: 30 FSALSSAFYLSSRPAFNVADGK----------------PPTPTSLPAALASWPLTLGASRKSPRVLLN---------TENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEKVEES 302
F AL AF S+ F+ DG+ P L A + W R + L+ + ++ AIQGLDRREVQNSVQAQGRVSGLIKELEAAKGI KATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEKVEES
Sbjct: 960 FRALIGAFANSNLARFHAEDGRGYVLVADMVLAVDKLNPQVAARLAGAFSLWRKFENTRRNMMKAQLDRLMAVGDGLSRDTFEIAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGILKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEKVEES 1257
BLAST of EWM21174.1 vs. NCBI_GenBank
Match: gi|298705387|emb|CBJ28677.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 242.662 bits (618), Expect = 2.590e-75 Identity = 127/246 (51.63%), Postives = 165/246 (67.07%), Query Frame = 0
Query: 54 TPTSLPAA-LASWPLTLGASRKSPRVLLNTENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEK 298
+P SLP +A + G+S E LL AI+G+ R + + + V ++ LE+ G P A ++ ++G WRL++T++ TASP+Q +FVG FA+YQ+ID+ S P TVTN+VDFG +G L V ALASTPSRP+ FVPR GDGRFFGLNILG+S+T P D P RIDF+FD AGFD LPF IPYPVPFRL DEVKGW++VTYLS RLR++RGNKGT+FVL++
Sbjct: 83 SPASLPEYFMALFGGNKGSSATRASKAEELEADLLSAIKGVQGRGRDVTQEQRELVDKAVEALESDGGAPNAASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLF----SEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPED--PSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQR 322
BLAST of EWM21174.1 vs. NCBI_GenBank
Match: gi|545371091|ref|XP_005650147.1| (hypothetical protein COCSUDRAFT_22800 [Coccomyxa subellipsoidea C-169] >gi|384252126|gb|EIE25603.1| hypothetical protein COCSUDRAFT_22800 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 189.504 bits (480), Expect = 9.623e-54 Identity = 110/233 (47.21%), Postives = 145/233 (62.23%), Query Frame = 0
Query: 71 ASRKSPRVLLNTENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVK---GWLEVTYLS--GRLRVSRGNKGTIFVLEK 298
A ++ P N L +QG + + ++ Q + + + ELE + G+ TT+ + G+W+LLYTS TASPIQ TFVG +AF+VYQE+ + S V NIV FG IG L V+A A+T SRP+P F PR G GL I G SKTE P + D RIDF+FD A FDL +LPF++PYPVPF+LL DE K GW+++TYLS G R+SRGNKGT+F+L K
Sbjct: 57 ARKRGPEDARNIIIGCLSGVQGRGKSGL-DATQLEA-LDAAVDELETSGGVRAPTTSPLLEGRWKLLYTSRPGTASPIQQTFVGVQAFSVYQEVLVGDSGVR-----VNNIVSFGNNIGQLKVEAEANTDSRPLPGFTPRKGK----GLPIFGKSKTEPP--AKKDIRIDFQFDRAAFDLKVLPFKVPYPVPFKLLGDETKACIGWIDITYLSPDGDFRLSRGNKGTLFILIK 276
BLAST of EWM21174.1 vs. NCBI_GenBank
Match: gi|926772962|ref|XP_013894955.1| (putative plastid-lipid-associated protein 12 [Monoraphidium neglectum] >gi|761963251|gb|KIY95935.1| putative plastid-lipid-associated protein 12 [Monoraphidium neglectum]) HSP 1 Score: 183.341 bits (464), Expect = 3.573e-51 Identity = 113/238 (47.48%), Postives = 144/238 (60.50%), Query Frame = 0
Query: 70 GASRKSPRVLLNTENSLLQAIQGLDRREVQN-SVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVK------GWLEVTYLS--GRLRVSRGNKGTIFVLEK 298
G +R TE ++L A++ R + S +A ++S I LE G+ TT I+GKWRLLYTS +ASPIQ TF G +AF +YQE+D+ SS P V N+VDFG IG L VQA AST SRP+ F PR+G+G FG ILG S P + P+ RIDF+FD A F LPF IPYPVPFR+L DE K GW++ TY++ G R++RGNKGT+FVL K
Sbjct: 12 GTTRTKAGSRATTELAVLDALRSAKGRGKEGLSEEALQQLSLAISVLEQDGGVADPTTLDAIDGKWRLLYTSRPGSASPIQRTFTGVEAFKIYQEVDL----SSDLP-RVNNVVDFGEEIGYLIVQAKASTESRPLEGFTPRVGEGLPFG--ILGKSFNTPP--ARPNSRIDFQFDQAAFHFKFLPFSIPYPVPFRILGDERKARPPSPGWIDTTYMNQDGTFRLARGNKGTLFVLVK 240
BLAST of EWM21174.1 vs. NCBI_GenBank
Match: gi|1004148558|gb|KXZ56530.1| (hypothetical protein GPECTOR_1g476 [Gonium pectorale]) HSP 1 Score: 171.4 bits (433), Expect = 1.977e-46 Identity = 92/195 (47.18%), Postives = 127/195 (65.13%), Query Frame = 0
Query: 107 RVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPG-TVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLS--GRLRVSRGNKGTIFVLEK 298
+++ ++ LEA G+ TT ++G+WRLLYTS +ASPIQ TF G +AF ++QE+ +A V N+V+F G +G L V+A AST +RP+P F PR G+ GL + G S T P + + R+DF+FD A F+ LPF+IPYPVPFR+L DE KGWL+VTY++ R+SRGNKGT+FVL K
Sbjct: 80 QLTAAVEALEADGGVADPTTLPSLDGRWRLLYTSRPGSASPIQRTFTGVEAFGIFQEVALAGGGEGEGEEPRVNNVVEF-GPLGFLKVEAQASTDTRPLPGFTPRAGE----GLPLFGKSFTYPP--ARRNMRVDFQFDKAAFNFRFLPFKIPYPVPFRILGDERKGWLDVTYMNTDATFRLSRGNKGTLFVLVK 267
BLAST of EWM21174.1 vs. NCBI_GenBank
Match: gi|764565579|ref|XP_011461839.1| (PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic isoform X2 [Fragaria vesca subsp. vesca]) HSP 1 Score: 165.622 bits (418), Expect = 4.335e-45 Identity = 96/221 (43.44%), Postives = 125/221 (56.56%), Query Frame = 0
Query: 83 ENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYL--SGRLRVSRGNKGTIFVLEKVEE 301
ENSL++A+ G+ R S Q V +K LEA KG+P+ T++ I G+W+L++T+ TASPIQ TFVG F+V+QE+ + + V+NIV F AIG L V+A AS + DG+ RI F+FD A F LPF++PYPVPFRLL DE KGWL+ TYL SG LR+SRGNKGT FVL+K E
Sbjct: 55 ENSLVEALIGIQGRGRSASPQQLNEVESAVKVLEALKGVPEPTSSSLIEGRWQLMFTTRPGTASPIQRTFVGVDFFSVFQEVYL-----QTKDQRVSNIVKFSDAIGELKVEAEAS------------IKDGK----------------------RILFRFDKAAFSFKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSESGNLRISRGNKGTTFVLQKKAE 236
BLAST of EWM21174.1 vs. NCBI_GenBank
Match: gi|658006662|ref|XP_008338501.1| (PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Malus domestica] >gi|658006664|ref|XP_008338502.1| PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Malus domestica]) HSP 1 Score: 166.777 bits (421), Expect = 4.725e-45 Identity = 108/275 (39.27%), Postives = 146/275 (53.09%), Query Frame = 0
Query: 33 LSSAFYLSSRPAFNVADGKPPTPTSLPAALASWPLTLGASRKSPRVLLN-------TENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYL--SGRLRVSRGNKGTIFVLEK 298
L S Y +P F+ P+PT+LP S + G ++ +VL ENSL++A+ G+ R S Q V + LE +G+P T++ I G+W+L++T+ TASPIQ TFVG F+V+QE+ + +S P V+NIV F A+G L V+A AS + DG+ RI F+FD A F L LPF++PYPVPFRLL DE KGWL+ TYL SG LR+SRGNKGT FVL+K
Sbjct: 11 LRSFHYWRQKPTFS------PSPTTLPFYRNSSASSAGRTKSLTKVLTQEEVSFTEQENSLVEALIGIQGRGRSASPQQLTDVQNAVNVLEGLQGVPDPTSSSLIEGRWQLMFTTRPGTASPIQRTFVGVDFFSVFQEVYL----RTSDP-RVSNIVKFSDAVGELKVEAAAS------------IKDGK----------------------RILFRFDKAAFSLKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSESGNLRISRGNKGTTFVLQK 240
BLAST of EWM21174.1 vs. NCBI_GenBank
Match: gi|159490954|ref|XP_001703438.1| (plastid lipid associated protein [Chlamydomonas reinhardtii] >gi|158280362|gb|EDP06120.1| plastid lipid associated protein, partial [Chlamydomonas reinhardtii]) HSP 1 Score: 166.392 bits (420), Expect = 6.107e-45 Identity = 99/236 (41.95%), Postives = 139/236 (58.90%), Query Frame = 0
Query: 70 GASRKSPRVLLNTENSLLQAIQGLDRREVQNSVQAQ-GRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDIAPSASSSAPGT----VTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLS--GRLRVSRGNKGTIFVLEK 298
GA + S R E ++L A+ R + + Q +++ ++ LEA G+ TT ++G+WRLLYTS +ASPIQ TF G +F+++QE+ + V N+V+FG A+G L V+A AST RP+P F PR G+G L + G S + P+ RIDF+FD A F+ LPF IPYPVPFR+L DE KGW++VTY++ R+SRGNKGT+FVL K
Sbjct: 39 GAKQLSVRERALAEQAVLSALASARGRGKEGLSEEQLEQLNSAVEALEADGGVADPTTLPALDGRWRLLYTSRPGSASPIQRTFTGVDSFSIFQEVLLTQEGGGEDGQEGGPRVNNVVEFG-ALGFLKVEAQASTDGRPLPGFTPRQGEG----LPLFGKSNNYPA--ARPNMRIDFQFDRAAFNFRFLPFTIPYPVPFRILGDERKGWIDVTYMNSDSTFRLSRGNKGTLFVLAK 267
BLAST of EWM21174.1 vs. NCBI_GenBank
Match: gi|302830576|ref|XP_002946854.1| (hypothetical protein VOLCADRAFT_86875 [Volvox carteri f. nagariensis] >gi|300267898|gb|EFJ52080.1| hypothetical protein VOLCADRAFT_86875 [Volvox carteri f. nagariensis]) HSP 1 Score: 167.162 bits (422), Expect = 8.081e-45 Identity = 101/234 (43.16%), Postives = 141/234 (60.26%), Query Frame = 0
Query: 81 NTENSLLQAIQGLDRREVQN-SVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQEIDI---APSASSSAPGT----------VTNIVDFGGAIGALNVQALASTPSRPIPNFVPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLS--GRLRVSRGNKGTIFVLEK 298
E ++L A+ G R + S ++ ++ LEA G+ TT ++G+WRLLYTS +ASPIQ TF G +AF+++QE+ + P A++ G V N+V+FG ++G L V+A AST +RP+ F PR G+G L + G S T P P+ RIDF+FD A F LPF++PYPVPF+LL DE KGWL+VTY++ G R+SRGNKGT+FVL K
Sbjct: 53 QAEQAVLTALNGARGRGKEGLSPDQLDELNRAVEVLEADGGVADPTTQPSLDGRWRLLYTSRPGSASPIQRTFTGVEAFSIFQEVQLTLRGPEAAAEDGGEEQEEEEEGPRVNNVVEFG-SLGFLRVEAQASTDTRPLVGFTPRPGEG----LPLFGKSFTYPP--IRPNSRIDFQFDRAAFTFRFLPFKLPYPVPFKLLGDERKGWLDVTYMNTDGTFRLSRGNKGTLFVLVK 279 The following BLAST results are available for this feature:
BLAST of EWM21174.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|