|
|
Properties
| Property Name | Value |
|---|
| Product | trna- methyltransferase |
| Orig transcript id | gnl|cribi|Naga_100111g6.4977.mrna |
| Orig protein id | gnl|cribi|Naga_100111g6.4977 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037254.1 | supercontig | KK037254.1:73554..76221 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9525 ID=rna9525|Name=rna9525|organism=Nannochloropsis gaditana|type=mRNA|length=2703bp
TTGATGACGAATGTCGACGAATGTGGGGTGTGTGGAGATGGCGGAGCGTG
TGTATTTTTGTTGGACCCTCGACTCATTGTATGAAAGTGCCTGGAGCTGT
TCAACTCGCGCGGTGAGACAGAGGCCACCCTCAGTTCAATCAATGCACCG
CAAGTGAATTACCCGAGATGCGCTTCTAAACACATGAAAATCACCTGATT
CTTCTCCTCAACTCTCTAATTTATTACTGTACTTGCTAAAATCAGCCTTG
TCGGGTCTCTGGCACATTTCGAGCTTCCCACCAGTCAGTTAAGATTTGCC
CACCATTTAGCTAGGTATGAGGAGGATTGCCTGTCGCAGAAACAGGAATC
TCCACATTCGATCTGCGTCTGTCGTTCTTGGCGCCTTCCTCTTGCTCGGA
GCTGTGGTTGGTTCTACCCGAAGCATCGGGGCTCACGGGGAGAGCAACAG
CTGCTTATCGAGAAGCCAAAGCCGCGACTTAAGTAGTGGAAGAAGAGGGC
GTCGCCCTGGAAATAGACGCGGCGGAGAAGCTGACAGGATTCCAAGCCCC
AGAGAGGCATTCGACTCCCGGAAAAGCCCCCTTGCCCGGATACAGCAGGC
ATCGGAGGTGCAAGGAAGAAAAACGAGAATACCTCATTCAGCTCCTGCTC
TTGTGCAAGCGAGACCAAGAAGCATGCGCAGCCCCGGCTCGAAAGCGGAC
GGCGCCCTCCCTGTCGACCGTCCCGCGCGGCGACCGTCCTTGACAGGGGG
CAGACCTTCTTCGAGGCCCTCCAGCCACTTGCAAGATAAAACCGCGGAGT
CCCTTGCTGCACTCGACGACACCGTGAGCCAGCTCTGTCGTCGAGTGCGT
GGCGGGAGCGTCAGCGAACGTTCCGTCCCCGCCGTGCCCAAAGGGGCCTC
TCCCAGCACGGCCCCGGCGGCATTGCAGACTGGGGATGGGCCGCCATCAA
TGGCCTCCACCCTGGTGACCGTGAAGCTGCTATTCCTCCTCTTCTATGGA
TCCTTAGGAGCAGTCATGCCTTACCTCCCCGTCTACTACCACTCCCTGGG
CCTCCCCGACAAGCAAATTGGCATGTTGGGAGCCATCACGCCGGCCGTCA
CTTTCGTTGTCGCCCCTCTCTGGGGAGCCCTGGCCGACCAAACGGGCCGA
CACAAGGACGTGCTCCTCTTCACTTTCGTCGCCTCTGTGGTCTCCCGCCT
GCTTTTCATCTGGCGGACCACCTTCGGATGGCTGGCAATTTTGGTGTTCT
GCACCGCGGTCTTGAATGCCCCCGTTCGGCCCTTGCTGGACAGCAGCGTC
TTGAACCTGCTGGAGGACAAGCGGGAGTATGGGAAACAACGCCTATGGGG
CCAGTTTGGCTTCGGGTTGGCGGGCTGCATCGTGGGTCCTTGCTTGATGA
ACCACAAGTTTGGGGGGTACAAGGCCGCTTTCTATGTCCATGCCCTCATC
TCCCTCCCCACGCTCCTGATCATGCGTCGCTTTAACCCGACCCCTCCAGC
CCCCGCGCCCTCTTCCCCTCCCTTACCTGTGGCCTCCACGAACAAGTCGG
AAAAGTCCTCAACGGCCAAGGAAGAGGGGCCGGGGGCTGTCGCCCTCCCT
TCCAGGGCACCCTCTGCGGCCCTCTCCTCCCAGCGGGCCAAACCGCGCTT
TCGAGAAGGGCTGGGTATCGTTGTTCGAAACCCAGACGCCCTCATCTTTT
TCTTCCTTGTCTTTGTGATCGGAGTCTCGAGCGGCGTCATAGAGAACTTT
GCCTACAAACGCTTACGGGAAGTTGGAGGGGAAGGAACCGTGATGGGAGT
TTCGCGCTTTTTTTCCTCCGTCACGGGCGTCCCCATGTTTTGGTTTTCCG
GGCATGTGACCCGGCGACTGAGCGTGATGGGGGTCCTGATCCTCTCTTTG
TGCTCCTACATTCTCCGCTTTTTCATCTACGCGTCTATCACCAATCCCTG
GCAAGGTCTGCCTGCCGAGGCACTCCGAGGGTTCACTTTTGCGGCCATGT
GGGCCTCCTCCACCTACTACACGCATAAAATTAGCCCTCCTGGATTAAGT
GCGACGATGCTGGGATTCTTGAACGGTATGTATGGCGGGTTAGGACAATC
CACAGGGGCGCTCATTGGCGGAGGCCTGTCGCACCGTGTCGGGACCCCCC
GGACGTTTGTTTTAGCGGGCTTGGCCGACATCGTGGTGGTCATTTGCTTT
GGAACCTATTGGTGGCTGCATCCGAACGCGACCCGGTTGAAGGAAGAGTG
AGGAAGACAGCTCAGGCTCTCTCAATTTTAACTGTGTGACGCTCGGGTTA
ATTTGCGGAGGCCCTGATAACACGTAGGTTTTGCGGCGCGTATAACGCAG
CCATGAGTTATGCCCTTGTCCACAATCCCCCATGAGCATCGTGGGGTCTT
GGATAATCATGAAGATTCGAGGCATCACCTCTTGATTTCACACAATGATG
CTTGCCACGGGAAAAGAGAGTTGCGGTGGTAGGGCTGCTAAGGAGAAAAA
CAGCGTATGGCGGAGGAAGGAGATATTGGGAGAACCAAAAACAGGCGTAT
GTAACATAGCGGAACGTGACCAGAGCAGGAGGATGGGAAACAAGGAGTTG
AAAGCAAATGATAGCTTCCTCCCGCTGGGACGATGAGATCTACCGGAGTG
TCTGAACACCGGCAAAGAAAGAAATTTAATCAAACGAAGACCCATGATTT
ATA back to topprotein sequence of rna9525 >rna9525-protein ID=rna9525-protein|Name=rna9525|organism=Nannochloropsis gaditana|type=polypeptide|length=522bp
MMKVSGILSQSLAFCVLCGQAAATAWSRRRHQLLQHHQHAFIFGLMGTFP
RAGRYASNFLVEQRSRCFSATSSLSSSTLSAFPSSNSSYSSSSSSNPASS
PHPFLSPPRPLSSSSSQHDSFIPSLLDKSLFESECHVQALRLPAAYCHHA
IQSLSPFLFRSTTQRSVMLPGRCTLPLDPPLKPDERLLLFCPPMLDDDQE
DGDARARGCAEPTRQHQTHTSHGSETSTGCQELVDNLLRTIPFASLLPPP
GLPVRLTYEDLSLHQALRRLLPPSLDVPASFETVGHLAHLNLRAEVLPYK
HLIAQVVLDKNRKRLQTVVNKVGEIGSTFRVLPLEVIGGKKDTCVRVKES
GARFEFDYAQVYWNSRLQGEHARIIDLVVSEGREGGRAGAGVERVDDTGD
SPPVVVWDVFAGVGPFALPLAVRGCQVYANDLNPDSYRYLCHNAALNKVP
LSFPSVPPSSPSSLPAGLPDAKGSSARAAATPSSSALPAPPPILLPQAPS
PRSVQSGREGLPTRPRPGEETR back to topmRNA from alignment at KK037254.1:73554..76221+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9525 ID=rna9525|Name=rna9525|organism=Nannochloropsis gaditana|type=mRNA|length=2668bp|location=Sequence derived from alignment at KK037254.1:73554..76221+ (Nannochloropsis gaditana)
TGGATGGTCTCTCGGTGGCTGTACGGATAGCCGACGCTACTCAACATGAC
AAAGATTATGTCACATCTCGTGGCCAATGACTGCATTTAAAAGAGTTGAT
ACCGACGCGTGTAAAGAGTAGACAATCTTATTCTCTTCGGCTTTTTCCGA
GGGGAAACCACGGCAAGATTGATCTAACAGACGTACATGGCCCAACCTAA
GACGTAGAAAGATCAAGGAGGTTCATTCTTATTTCCCTATTCtcaggagg
accaggacggagggaggttgTCTGCGAGACTAGCAGATGATGAAAGTGTC
GGGAATTTTGTCTCAAAGTCTTGCGTTCTGCGTACTGTGTGGCCAAGCCG
CGGCAACAGCTTGGAGCAGGCGTCGACATCAACTACTACAACATCACCAA
CATGCCTTCATCTTCGGCTTAATGGGCACATTTCCTCGAGCCGGCCGGTA
TGCGTCCAATTTTCTCGTCGAACAGCGCTCCCGCTGCTTCTCTGCCACTT
CCTCGTTGTCCTCCTCTACATTATCTGCGTTCCCGTCGTCTAACTCCTCT
TactcgtcctcttcatcttcaaaCCCTGCTTCGTCTCCTCACCCCTTCTT
atctcctccgcgtcctctctCATCGTCTTCATCTCAACACGACTCCTTCA
TCCCGTCCTTGTTGGACAAAAGCCTGTTCGAGAGCGAGTGCCACGTGCAA
GCCTTGCGCCTTCCTGCTGCCTATTGCCACCACGCTATTCAATCGCTAtc
tccgttcctcttccgctccaCAACGCAGCGGAGTGTAATGCTGCCGGGAA
GATGTACGCTGCCGCTCGACCCTCCGCTTAAGCCAGACGAACGTCTGCTC
CTCTTTTGCCCTCCAATGTTGGACGATGAccaagaggacggggacgcaCG
TGCTAGGGGTTGTGCGGAGCCGACTCGGCAGCACCAGACGCATACGTCAC
ACGGGTCCGAAACGTCAACTGGATGCCAGGAGCTTGTcgacaacctcctc
cgcaccattcccttcgcttccttgctcccccctcccggactCCCTGTCCG
ACTCACCTATGAGGACCTCTCCCTTCACCAAgccctccgccggctcctgc
cgccctccctggacGTTCCTGCCTCTTTCGAGACCGTGGGCCACCTCGCC
CACTTGAATTTACGGGCTGAAGTCCTTCCGTACAAGCACCTGATAGCCCA
GGTCGTGCTGGACAAGAACCGGAAGCGGCTCCAGACGGTCGTGAACAAGG
TCGGGGAGATCGGGAGCACGTTCCGGGTCCTGCCCTTGGAGGTGatagga
gggaagaaggacacCTGCGTACGGGTCAAGGAGAGCGGTGCCCGGTTCGA
GTTTGACTACGCGCAGGTGTACTGGAACAGCCGGTTGCAGGGGGAGCATG
CCCGGATAATCGACCTGGTCGTctcggaagggagggagggagggagggcg
ggggccggggtTGAAAGGGTGGACGACACTGGtgactccccccccgtggT
GGTGTGGGATGTGTTTGCCGGCGTGGGGCCTTTCGCCCTGCCTTTGGCCG
TGCGCGGATGTCAGGTCTACGCGAATGATCTGAACCCGGACAGTTACCGG
TATCTCTGCCATAACGCCGCTTTGAATAAGgtgcctctctcctttccttc
cgtcccgccctcctccccttcctcactcccgGCCGGCCTTCCTGATGCCA
AGGGATCTTCCGCAAGGGCCGCCGcgactccctcttcctccgccctccca
gccccccccccgatcctcctcccccaggcccccTCACCTCGTTCCGTACA
AtcaggacgggagggactTCCTACGCGCCCTCGCCCGGGAGAAGAAACCC
GCTAGCCACATTTTGAtgaacctccccgccctggcatTGAGCTTTTTGGA
CGTCTtttccgaggaggaggggagggagggaggaaaagaggggagggaag
gaccgaGGGTggcgccaggaggaggagggtcgaAAAAACGAGACGGGGAA
TCACTCTTGTTCGGATacttgggagggaaaggggtggtAGTGCACGTCTA
TGCTTTCAGTAAAGCCGAGGATGGCGCGCGAGACGTGGTGGAACGCGCCG
CGTCGGCCTTGGGAGTGGAGGTGGAacggctggagggagggaaagaggca
gggcGCGTGCTTGTGCGCCACGTCAGGGACGTGGCGCCGAACAAGCAGAT
GCTTTGCCTTTCGTTTCCCTTGGATTTAGTCCTCTTGGGCTcgaatggag
gggaagagtaCGAAGGAAAAACGGGGTCAAACAAGGCCCGGGGCCccccg
ggaggaaggcaaggggcGAAGGGCTGAGTGTgccctgtcctctcccacca
aACACCTCGAATGCCAACGAGACCATAATCGTGTAAAAATCAATGTAAAT
GTAAAATGCTTTCTGACAGGTGTGCGTCTCCTTACTCAGCCCTCGGTATT
CCCACATTCATGCCCAAAGTTACAACCCTTGCACTGACAGAGACAAAAGA
CCTCTTCTAGCAACCAAACCGAGGCACACGGCTTGCCGCTTTCTGCCTTC
TCGATTACGATTCCTCAACTTTCTCCAGCACAAATATAGTCCCTTTGTTG
CCCCGGGAGACCCGGAGCCGCCCCGACAAGTAGGTGACCTCAAGCCAGCC
TTTCACCTCGTCGTTGAG back to topCoding sequence (CDS) from alignment at KK037254.1:73554..76221+ >rna9525 ID=rna9525|Name=rna9525|organism=Nannochloropsis gaditana|type=CDS|length=1569bp|location=Sequence derived from alignment at KK037254.1:73554..76221+ (Nannochloropsis gaditana)
ATGATGAAAGTGTCGGGAATTTTGTCTCAAAGTCTTGCGTTCTGCGTACT
GTGTGGCCAAGCCGCGGCAACAGCTTGGAGCAGGCGTCGACATCAACTAC
TACAACATCACCAACATGCCTTCATCTTCGGCTTAATGGGCACATTTCCT
CGAGCCGGCCGGTATGCGTCCAATTTTCTCGTCGAACAGCGCTCCCGCTG
CTTCTCTGCCACTTCCTCGTTGTCCTCCTCTACATTATCTGCGTTCCCGT
CGTCTAACTCCTCTTactcgtcctcttcatcttcaaaCCCTGCTTCGTCT
CCTCACCCCTTCTTatctcctccgcgtcctctctCATCGTCTTCATCTCA
ACACGACTCCTTCATCCCGTCCTTGTTGGACAAAAGCCTGTTCGAGAGCG
AGTGCCACGTGCAAGCCTTGCGCCTTCCTGCTGCCTATTGCCACCACGCT
ATTCAATCGCTAtctccgttcctcttccgctccaCAACGCAGCGGAGTGT
AATGCTGCCGGGAAGATGTACGCTGCCGCTCGACCCTCCGCTTAAGCCAG
ACGAACGTCTGCTCCTCTTTTGCCCTCCAATGTTGGACGATGAccaagag
gacggggacgcaCGTGCTAGGGGTTGTGCGGAGCCGACTCGGCAGCACCA
GACGCATACGTCACACGGGTCCGAAACGTCAACTGGATGCCAGGAGCTTG
Tcgacaacctcctccgcaccattcccttcgcttccttgctcccccctccc
ggactCCCTGTCCGACTCACCTATGAGGACCTCTCCCTTCACCAAgccct
ccgccggctcctgccgccctccctggacGTTCCTGCCTCTTTCGAGACCG
TGGGCCACCTCGCCCACTTGAATTTACGGGCTGAAGTCCTTCCGTACAAG
CACCTGATAGCCCAGGTCGTGCTGGACAAGAACCGGAAGCGGCTCCAGAC
GGTCGTGAACAAGGTCGGGGAGATCGGGAGCACGTTCCGGGTCCTGCCCT
TGGAGGTGataggagggaagaaggacacCTGCGTACGGGTCAAGGAGAGC
GGTGCCCGGTTCGAGTTTGACTACGCGCAGGTGTACTGGAACAGCCGGTT
GCAGGGGGAGCATGCCCGGATAATCGACCTGGTCGTctcggaagggaggg
agggagggagggcgggggccggggtTGAAAGGGTGGACGACACTGGtgac
tccccccccgtggTGGTGTGGGATGTGTTTGCCGGCGTGGGGCCTTTCGC
CCTGCCTTTGGCCGTGCGCGGATGTCAGGTCTACGCGAATGATCTGAACC
CGGACAGTTACCGGTATCTCTGCCATAACGCCGCTTTGAATAAGgtgcct
ctctcctttccttccgtcccgccctcctccccttcctcactcccgGCCGG
CCTTCCTGATGCCAAGGGATCTTCCGCAAGGGCCGCCGcgactccctctt
cctccgccctcccagccccccccccgatcctcctcccccaggcccccTCA
CCTCGTTCCGTACAAtcaggacgggagggactTCCTACGCGCCCTCGCCC
GGGAGAAGAAACCCGCTAG back to top
|