rna9520, rna9520 (mRNA) Nannochloropsis gaditana

Overview
Namerna9520
Unique Namerna9520
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length380
Alignment locationKK037254.1:52283..53273 +

Link to JBrowse

Properties
Property NameValue
Productn-acetylglutamate synthase
Orig transcript idgnl|cribi|Naga_101699g1.3594.mrna
Orig protein idgnl|cribi|Naga_101699g1.3594
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:52283..53273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101699g1gene9241Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9520rna9520-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21184.1cds9489Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9520 ID=rna9520|Name=rna9520|organism=Nannochloropsis gaditana|type=mRNA|length=380bp
ATGATTTGTCGTGAAAAGGCAATCTCAGGATACGGCCACCCATCCCCCTT
CCTCCCTCCCTTCCTCCTTTCCTTCCTCCCTCCCTTCCTCCTTCCCTCGC
TCCCGCCGCGGTTCCAGCTGAAGGACGCCAAGGCCCTCTTGGAGCACCGG
GAGATCGTGCTGTACCCACAGAGCGTGACGGACGGGTGCATGGTAGACGG
GAAGGCGGTGCTGCGTGAGTCGCGCCCCTCGGATCATGACTACCAGGCCG
CCATACTCCGGTGGGGAGGAGGGAGGGAGGGAAGGAGAGGGGGAAAGGAG
AGGCCCTATCCCAGCGCTTGATGTGGTGATGCTGACTCCCGCGTGACTCT
AATGGCCGTAGACTCACGACACTGACCGTT
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protein sequence of rna9520

>rna9520-protein ID=rna9520-protein|Name=rna9520|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MQWFLERGFEERSVGALPESRRDIYNWERKSKIYMKDIKTVRDLDAEELF
YNVGERRDGAFEGRPGAREKGRSKRSVDDCDLRNDHQWFLSPASGGSRGK
RLLPFGAWATQTHAVSGVPALWAQPPLSRIRSLARPSCPTATSSLHRRGD
LDQSSRDSPSLQALTLRVVLDSPQPQGRKRGASFASASSMLDAARGPWGG
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mRNA from alignment at KK037254.1:52283..53273+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9520 ID=rna9520|Name=rna9520|organism=Nannochloropsis gaditana|type=mRNA|length=991bp|location=Sequence derived from alignment at KK037254.1:52283..53273+ (Nannochloropsis gaditana)
atgCAGTGGTTCTTGGAGCGCGGCTTTGAAGAGCGGTCGGTGGGGGCCCT
CCCAGAGTCGCGGCGAGACATATACAACTGGGAGCGCAAGAGCAAGATCT
ACATGAAGGTACGGGAGCTcacgcgaaggagggcgcgagggagggagaga
gggaacgaggaaaggagggagggagggagggagattcGATGGTGCGGGCA
GTCAAAGGGGCGACTTGGACTCGCGGATCTCAAATGGCCCGCTTTCGACG
GTTTGCTcaatttctctttctccctccccctctcctttcctccctttgcc
cccaTCTCCACGAAGGACATCAAAACCGTCCGCGATCTGGACGCTGAGGA
GCTCTTCTACAACGTGTAatgagaggagagaagaacggagggagggaagg
agggagggcggacgtGTCTTCCCCCGGAGCGTGGGCAGGGAGATGCAACC
ACAATGTAaagtaggagggagggagaggggatggaTATCGCAAAGGAAGA
ATGGATCGAAAACGGGGCGCGGTTAAGCGGATTGGACATGCTctagggga
gaaagaagagacggTGCCTTTGAAGGGCGTCCTGGAgcgagagaaaaggg
gcGGTCAAAGCGAAGCGTCGACGATTGCGACCTAAGAAATGACCACCAGT
GGTTCCTTTCGCCTGCGTCAGGTGGCAGTAGAGGGAAGAGACTCCTTCCG
TTTGGCGCATGGGCCACGCAAACGCATGCCGTGTCCGGGGTCCCGGCGCT
CTGGGCCCAGCCCCCCTTGTCGCGGATCCGGAGCcttgcccgtccctcct
gccccacgGCGACCTCGTCCCTACATAGACGCGGAGACCTCGACCAAAGT
TCCCGAGATTCCCCATCCCTGCAGGCACTCACTCTGCGGGTCGTGCTCGA
TTCGCCTCAGCCTCAGGGACGAAAGAGGGGGGCTTCTTTtgcctccgcgt
cctccatgcTCGACGCAGCACGAGGCCCCTGGGGAGGGTAG
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Coding sequence (CDS) from alignment at KK037254.1:52283..53273+

>rna9520 ID=rna9520|Name=rna9520|organism=Nannochloropsis gaditana|type=CDS|length=1809bp|location=Sequence derived from alignment at KK037254.1:52283..53273+ (Nannochloropsis gaditana)
atgCAGTGGTTCTTGGAGCGCGGCTTTGAAGAGCGGTCGGTGGGGGCCCT
CCCAGAGTCGCGGCGAGACATATACAACTGGGAGCGCAAGAGCAAGATCT
ACATGAAGGACATCAAAACCGTCCGCGATCTGGACGCTGAGGAGCTCTTC
TACAACGTgggagaaagaagagacggTGCCTTTGAAGGGCGTCCTGGAgc
gagagaaaaggggcGGTCAAAGCGAAGCGTCGACGATTGCGACCTAAGAA
ATGACCACCAGTGGTTCCTTTCGCCTGCGTCAGGTGGCAGTAGAGGGAAG
AGACTCCTTCCGTTTGGCGCATGGGCCACGCAAACGCATGCCGTGTCCGG
GGTCCCGGCGCTCTGGGCCCAGCCCCCCTTGTCGCGGATCCGGAGCcttg
cccgtccctcctgccccacgGCGACCTCGTCCCTACATAGACGCGGAGAC
CTCGACCAAAGTTCCCGAGATTCCCCATCCCTGCAGGCACTCACTCTGCG
GGTCGTGCTCGATTCGCCTCAGCCTCAGGGACGAAAGAGGGGGGCTTCTT
TtgcctccgcgtcctccatgcTCGACGCAGCACGAGGCCCCTGGGGAGGG
TAGatgCAGTGGTTCTTGGAGCGCGGCTTTGAAGAGCGGTCGGTGGGGGC
CCTCCCAGAGTCGCGGCGAGACATATACAACTGGGAGCGCAAGAGCAAGA
TCTACATGAAGGACATCAAAACCGTCCGCGATCTGGACGCTGAGGAGCTC
TTCTACAACGTgggagaaagaagagacggTGCCTTTGAAGGGCGTCCTGG
AgcgagagaaaaggggcGGTCAAAGCGAAGCGTCGACGATTGCGACCTAA
GAAATGACCACCAGTGGTTCCTTTCGCCTGCGTCAGGTGGCAGTAGAGGG
AAGAGACTCCTTCCGTTTGGCGCATGGGCCACGCAAACGCATGCCGTGTC
CGGGGTCCCGGCGCTCTGGGCCCAGCCCCCCTTGTCGCGGATCCGGAGCc
ttgcccgtccctcctgccccacgGCGACCTCGTCCCTACATAGACGCGGA
GACCTCGACCAAAGTTCCCGAGATTCCCCATCCCTGCAGGCACTCACTCT
GCGGGTCGTGCTCGATTCGCCTCAGCCTCAGGGACGAAAGAGGGGGGCTT
CTTTtgcctccgcgtcctccatgcTCGACGCAGCACGAGGCCCCTGGGGA
GGGTAGatgCAGTGGTTCTTGGAGCGCGGCTTTGAAGAGCGGTCGGTGGG
GGCCCTCCCAGAGTCGCGGCGAGACATATACAACTGGGAGCGCAAGAGCA
AGATCTACATGAAGGACATCAAAACCGTCCGCGATCTGGACGCTGAGGAG
CTCTTCTACAACGTgggagaaagaagagacggTGCCTTTGAAGGGCGTCC
TGGAgcgagagaaaaggggcGGTCAAAGCGAAGCGTCGACGATTGCGACC
TAAGAAATGACCACCAGTGGTTCCTTTCGCCTGCGTCAGGTGGCAGTAGA
GGGAAGAGACTCCTTCCGTTTGGCGCATGGGCCACGCAAACGCATGCCGT
GTCCGGGGTCCCGGCGCTCTGGGCCCAGCCCCCCTTGTCGCGGATCCGGA
GCcttgcccgtccctcctgccccacgGCGACCTCGTCCCTACATAGACGC
GGAGACCTCGACCAAAGTTCCCGAGATTCCCCATCCCTGCAGGCACTCAC
TCTGCGGGTCGTGCTCGATTCGCCTCAGCCTCAGGGACGAAAGAGGGGGG
CTTCTTTtgcctccgcgtcctccatgcTCGACGCAGCACGAGGCCCCTGG
GGAGGGTAG
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Synonyms
Publications